Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.4e-159 565.5 283 100.0
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 1.8e-119 433.0 265 80.0
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.3e-112 407.9 267 78.3
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 2.9e-109 399.1 279 72.0
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 8.0e-99 364.4 265 66.0
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 2.0e-94 349.7 265 63.4
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 3.5e-94 349.0 243 70.4
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 5.9e-94 348.2 265 63.0
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.4e-87 327.0 263 67.7
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 3.5e-86 322.4 269 59.9
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 2.5e-84 316.2 290 56.6
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 4.3e-84 315.5 271 60.5
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 1.2e-83 313.9 266 58.3
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 4.7e-83 312.0 269 58.7
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.0e-82 309.3 193 80.8
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 3.0e-82 309.3 264 57.6
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 4.0e-82 308.9 277 55.6
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 1.2e-81 307.4 272 58.8
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 1.5e-81 307.0 265 59.2
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 7.5e-81 304.7 265 57.0
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 9.8e-81 304.3 271 58.3
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 1.8e-79 300.1 265 56.2
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 1.8e-79 300.1 267 58.4
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 1.6e-78 297.0 276 53.3
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 2.7e-78 296.2 265 55.5
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 2.7e-78 296.2 267 57.3
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 3.5e-78 295.8 265 56.6
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 4.6e-78 295.4 265 55.5
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.7e-77 293.5 265 55.5
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.5e-76 290.4 287 52.3
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 1.5e-76 290.4 265 53.6
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.9e-76 290.0 265 55.8
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 3.3e-76 289.3 265 55.1
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 9.5e-76 287.7 265 55.1
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.2e-75 287.3 267 55.4
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 1.6e-75 287.0 270 55.9
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 2.1e-75 286.6 267 55.1
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 3.6e-75 285.8 287 50.5
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 4.7e-75 285.4 263 55.5
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 6.2e-75 285.0 265 53.2
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 1.1e-74 284.3 270 53.7
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 1.4e-74 283.9 270 53.7
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 5.8e-73 278.5 290 50.0
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 1.3e-72 277.3 288 50.0
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 1.3e-72 277.3 242 57.4
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 1.9e-71 273.5 269 53.5
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 5.4e-71 271.9 270 53.3
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.2e-70 270.8 265 52.1
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.6e-70 270.4 288 48.3
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 2.1e-70 270.0 277 52.0
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 6.0e-70 268.5 273 54.2
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 7.8e-70 268.1 288 47.9
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 2.3e-69 266.5 284 47.2
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 6.6e-69 265.0 236 56.4
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 6.6e-69 265.0 263 52.5
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 2.1e-67 260.0 282 53.2
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 6.2e-67 258.5 274 52.6
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.3e-64 250.8 274 47.8
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 1.0e-61 241.1 275 47.3
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 3.9e-61 239.2 272 48.9
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 6.6e-61 238.4 265 48.7
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 1.9e-60 236.9 269 49.4
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 3.6e-59 232.6 273 48.4
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 3.1e-58 229.6 283 45.6
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 5.8e-57 225.3 280 44.6
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 1.3e-56 224.2 265 47.2
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 1.7e-56 223.8 276 46.0
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 6.4e-56 221.9 281 45.2
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 8.4e-56 221.5 280 43.2
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 8.4e-56 221.5 272 45.6
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 1.4e-55 220.7 277 45.5
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 3.2e-55 219.5 277 45.1
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 5.4e-55 218.8 271 45.4
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 7.1e-55 218.4 270 43.7
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 9.2e-55 218.0 283 44.2
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 9.2e-55 218.0 287 44.3
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 4.6e-54 215.7 280 43.9
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 7.8e-54 214.9 278 41.7
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 1.3e-53 214.2 228 48.7
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.7e-53 213.8 263 46.0
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 5.1e-53 212.2 307 42.0
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 1.9e-52 210.3 288 44.4
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 3.3e-52 209.5 283 41.0
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 5.6e-52 208.8 267 44.2
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 9.6e-52 208.0 220 50.0
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 1.2e-51 207.6 271 44.3
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 3.6e-51 206.1 279 42.7
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 6.9e-50 201.8 269 43.5
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 7.6e-49 198.4 308 41.6
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 7.6e-49 198.4 266 40.2
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 5.4e-47 192.2 274 40.9
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 1.3e-45 187.6 150 64.7
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 1.7e-45 187.2 280 41.8
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 4.8e-43 179.1 232 44.8
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 4.8e-43 179.1 239 43.5
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 1.2e-38 164.5 275 38.2
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 3.0e-37 159.8 225 40.0
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 9.6e-36 154.8 133 57.1
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.1e-34 151.4 86 83.7
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.1e-34 151.4 86 84.9
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 6.9e-34 148.7 122 63.9
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.2e-33 147.9 86 82.6
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 1.6e-30 137.5 117 60.7
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.0e-29 133.3 86 77.9
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 6.2e-27 125.6 248 35.5
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 8.2e-27 125.2 269 31.6
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 2.0e-25 120.6 141 40.4
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 3.4e-25 119.8 231 33.8
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 8.4e-24 115.2 141 46.1
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.2e-23 112.8 86 68.6
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.6e-22 110.9 132 43.9
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.0e-21 106.7 149 36.2
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.5e-16 89.0 193 29.0
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 1.6e-14 84.3 119 44.5
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-14 84.0 134 32.1
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 6.1e-14 82.4 131 37.4
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 3.0e-13 80.1 117 36.8
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.1e-13 79.3 45 82.2
CSS0033804 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.7e-12 75.9 59 62.7
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.3e-11 74.7 42 81.0
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.3e-11 72.4 140 29.3
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 2.0e-09 67.4 122 37.7
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.0e-09 67.4 129 33.3
CSS0007257 Camellia sinensis var. sinensis HOM05D039489 ORTHO05D005220 3.8e-08 63.2 50 66.0
CSS0018695 Camellia sinensis var. sinensis HOM05D039489 ORTHO05D005220 1.4e-07 61.2 50 64.0
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.5e-07 60.5 66 34.8
CSS0005932 Camellia sinensis var. sinensis HOM05D039489 ORTHO05D005220 4.2e-07 59.7 50 64.0
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.2e-06 58.2 55 38.2


User provided reference genes

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