Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 3.8e-48 194.5 97 100.0
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 7.3e-36 153.7 93 83.9
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 4.0e-26 121.3 110 64.5
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 9.9e-25 116.7 93 68.8
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 1.9e-23 112.5 96 62.5
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 4.6e-22 107.8 94 64.9
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 4.8e-19 97.8 91 56.0
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 1.4e-18 96.3 90 52.2
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 9.0e-18 93.6 101 55.4
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 1.5e-17 92.8 97 55.7
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 1.5e-17 92.8 86 57.0
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 2.0e-17 92.4 86 53.5
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 4.5e-17 91.3 86 55.8
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 4.5e-17 91.3 87 56.3
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 4.5e-17 91.3 86 52.3
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.0e-16 90.1 86 52.3
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 2.9e-16 88.6 97 51.5
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 3.8e-16 88.2 92 55.4
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 3.8e-16 88.2 90 52.2
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 4.9e-16 87.8 87 52.9
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 4.9e-16 87.8 92 54.3
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 4.9e-16 87.8 92 52.2
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 6.5e-16 87.4 87 52.9
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 6.5e-16 87.4 85 52.9
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 6.5e-16 87.4 97 53.6
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 6.5e-16 87.4 87 54.0
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 1.1e-15 86.7 94 51.1
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.4e-15 86.3 84 51.2
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 1.9e-15 85.9 87 52.9
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 1.9e-15 85.9 87 52.9
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 2.5e-15 85.5 84 50.0
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.5e-15 85.5 83 54.2
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 3.2e-15 85.1 87 51.7
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 3.2e-15 85.1 87 51.7
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 4.2e-15 84.7 100 50.0
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 5.5e-15 84.3 87 52.9
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 7.1e-15 84.0 85 48.2
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 7.1e-15 84.0 88 52.3
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 7.1e-15 84.0 85 54.1
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 9.3e-15 83.6 87 50.6
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.2e-14 83.2 91 47.3
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 2.1e-14 82.4 92 51.1
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 2.7e-14 82.0 87 50.6
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.7e-14 82.0 81 55.6
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 4.6e-14 81.3 87 49.4
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 4.6e-14 81.3 81 54.3
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 4.6e-14 81.3 85 48.2
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 4.6e-14 81.3 104 46.2
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 7.9e-14 80.5 86 51.2
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 1.3e-13 79.7 86 54.7
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 1.8e-13 79.3 90 53.3
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 1.8e-13 79.3 93 51.6
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 2.3e-13 79.0 87 50.6
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.3e-13 79.0 81 53.1
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 2.3e-13 79.0 96 44.8
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 2.3e-13 79.0 84 50.0
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 2.3e-13 79.0 87 47.1
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 3.0e-13 78.6 100 48.0
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 3.9e-13 78.2 91 46.2
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 5.1e-13 77.8 81 51.9
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 5.1e-13 77.8 89 50.6
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 5.1e-13 77.8 88 52.3
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 6.7e-13 77.4 96 50.0
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 8.7e-13 77.0 102 48.0
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 8.7e-13 77.0 90 46.7
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 1.1e-12 76.6 90 51.1
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 1.1e-12 76.6 83 45.8
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.5e-12 76.3 85 51.8
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 1.9e-12 75.9 93 49.5
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 1.9e-12 75.9 84 48.8
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 3.3e-12 75.1 93 45.2
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 4.3e-12 74.7 82 52.4
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 4.3e-12 74.7 99 45.5
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 7.4e-12 73.9 90 46.7
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 1.6e-11 72.8 85 49.4
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 1.6e-11 72.8 91 48.4
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 2.2e-11 72.4 83 47.0
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 2.2e-11 72.4 90 45.6
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 2.8e-11 72.0 95 43.2
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 2.8e-11 72.0 90 48.9
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 4.8e-11 71.2 88 44.3
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 4.8e-11 71.2 97 45.4
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.4e-10 69.7 85 48.2
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 1.4e-10 69.7 85 43.5
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 1.4e-10 69.7 97 43.3
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 2.4e-10 68.9 85 48.2
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.1e-10 68.6 85 47.1
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 3.1e-10 68.6 89 46.1
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 5.3e-10 67.8 55 61.8
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 5.3e-10 67.8 86 46.5
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.2e-09 66.6 87 46.0
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 1.2e-09 66.6 85 49.4
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 2.0e-09 65.9 85 45.9
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 2.6e-09 65.5 85 44.7
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 3.4e-09 65.1 87 42.5
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 5.9e-09 64.3 85 43.5
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 7.6e-09 63.9 94 40.4
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.0e-08 63.5 96 39.6
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 1.0e-08 63.5 89 40.4
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.0e-08 63.5 91 45.1
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.3e-08 63.2 87 42.5
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 1.7e-08 62.8 93 43.0
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 1.7e-08 62.8 88 38.6
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 5.0e-08 61.2 85 47.1
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 6.5e-08 60.8 94 40.4
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 1.9e-07 59.3 82 43.9
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 2.5e-07 58.9 84 42.9
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 3.2e-07 58.5 104 46.2
Nitab4.5_0002284g0060 Nicotiana tabacum HOM05D005269 ORTHO05D006429 4.2e-07 58.2 60 50.0
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 4.2e-07 58.2 100 42.0
Nitab4.5_0011997g0010 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.2e-06 56.6 60 48.3
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 7.9e-06 53.9 88 36.4


User provided reference genes

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