Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia04544 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.8e-42 174.9 87 100.0
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.7e-23 112.5 69 84.1
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 8.9e-17 90.1 68 67.6
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.3e-15 86.3 45 91.1
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 2.7e-13 78.6 64 65.6
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 1.3e-12 76.3 71 57.7
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.9e-11 72.4 69 55.1
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 5.6e-11 70.9 70 57.1
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 1.3e-10 69.7 70 52.9
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.8e-10 68.6 66 56.1
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.8e-10 68.6 66 56.1
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.8e-10 68.6 66 56.1
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 8.1e-10 67.0 70 52.9
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 1.1e-09 66.6 70 51.4
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 1.4e-09 66.2 70 55.7
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.8e-09 65.9 66 53.0
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.2e-08 63.2 69 52.2
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 5.8e-08 60.8 70 48.6
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 5.8e-08 60.8 70 48.6
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 7.6e-08 60.5 70 52.9
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 9.9e-08 60.1 67 50.7
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.3e-07 59.7 84 46.4
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 1.3e-07 59.7 66 53.0
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 1.3e-07 59.7 69 47.8
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 1.7e-07 59.3 66 53.0
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 2.2e-07 58.9 66 48.5
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 3.8e-07 58.2 70 48.6
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 3.8e-07 58.2 66 51.5
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 6.4e-07 57.4 66 53.0
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 8.4e-07 57.0 66 48.5
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 8.4e-07 57.0 70 52.9
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 1.1e-06 56.6 69 50.7
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.4e-06 56.2 61 52.5
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.4e-06 56.2 66 51.5
Actinidia24784 Actinidia chinensis HOM05D005839 ORTHO05D057558 3.2e-06 55.1 39 82.1
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.2e-06 55.1 66 47.0
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 3.2e-06 55.1 66 47.0
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 4.2e-06 54.7 66 50.0
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 4.2e-06 54.7 66 50.0
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 5.4e-06 54.3 69 49.3
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 5.4e-06 54.3 66 50.0


User provided reference genes

Program Settings