Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.0e-151 540.0 276 100.0
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 2.3e-74 283.1 342 54.4
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 1.4e-42 177.6 363 38.8
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 5.3e-39 165.6 316 40.8
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 8.8e-34 148.3 294 41.8
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 2.2e-29 133.7 358 35.8
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 2.9e-21 106.7 232 39.7
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 3.8e-21 106.3 282 33.0
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 1.6e-14 84.3 285 31.2
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 2.7e-14 83.6 292 33.6
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 2.7e-14 83.6 290 33.1
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 2.2e-13 80.5 274 33.2
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 4.2e-12 76.3 289 29.8
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 7.2e-12 75.5 219 30.6
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 2.1e-11 73.9 258 27.1
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 3.6e-11 73.2 199 30.7
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.0e-10 71.6 243 30.0
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.0e-10 71.6 42 81.0
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 3.0e-10 70.1 42 69.0
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 5.2e-10 69.3 42 76.2
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 6.8e-10 68.9 41 75.6
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 6.8e-10 68.9 306 26.8
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 8.8e-10 68.6 210 30.0
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 1.2e-09 68.2 44 65.9
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 1.2e-09 68.2 70 55.7
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 1.2e-09 68.2 215 30.7
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 1.5e-09 67.8 40 70.0
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 1.5e-09 67.8 392 26.5
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.5e-09 67.8 42 73.8
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 1.5e-09 67.8 215 30.2
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 2.0e-09 67.4 44 68.2
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 2.0e-09 67.4 40 72.5
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 2.6e-09 67.0 44 68.2
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 2.6e-09 67.0 239 32.2
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 2.6e-09 67.0 289 28.7
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 2.6e-09 67.0 42 71.4
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 2.6e-09 67.0 41 68.3
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.4e-09 66.6 142 35.2
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 3.4e-09 66.6 231 30.7
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 3.4e-09 66.6 40 75.0
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 4.4e-09 66.2 55 56.4
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 4.4e-09 66.2 41 70.7
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 4.4e-09 66.2 40 67.5
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 4.4e-09 66.2 42 69.0
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 4.4e-09 66.2 44 65.9
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 4.4e-09 66.2 57 57.9
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 4.4e-09 66.2 295 27.1
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 4.4e-09 66.2 115 36.5
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 5.7e-09 65.9 269 29.4
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 5.7e-09 65.9 269 29.4
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 5.7e-09 65.9 256 26.6
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 5.7e-09 65.9 47 61.7
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 7.5e-09 65.5 300 29.7
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 7.5e-09 65.5 59 52.5
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 7.5e-09 65.5 40 70.0
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 9.8e-09 65.1 47 59.6
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 9.8e-09 65.1 70 47.1
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 9.8e-09 65.1 282 29.1
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 9.8e-09 65.1 219 31.5
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 9.8e-09 65.1 263 28.5
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 1.3e-08 64.7 41 68.3
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 1.3e-08 64.7 41 68.3
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 1.3e-08 64.7 41 68.3
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.3e-08 64.7 41 68.3
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 1.3e-08 64.7 41 68.3
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 1.7e-08 64.3 41 65.9
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 1.7e-08 64.3 41 68.3
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 1.7e-08 64.3 41 68.3
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 1.7e-08 64.3 41 63.4
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 1.7e-08 64.3 41 65.9
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 2.2e-08 63.9 41 63.4
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 2.2e-08 63.9 41 63.4
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 2.2e-08 63.9 40 70.0
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 2.2e-08 63.9 40 75.0
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 2.8e-08 63.5 42 64.3
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 3.7e-08 63.2 40 62.5
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 3.7e-08 63.2 40 72.5
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 3.7e-08 63.2 41 65.9
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 3.7e-08 63.2 222 30.6
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 4.8e-08 62.8 40 67.5
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 4.8e-08 62.8 278 29.1
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 4.8e-08 62.8 195 31.8
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 4.8e-08 62.8 46 63.0
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 4.8e-08 62.8 46 63.0
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 6.3e-08 62.4 41 61.0
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 6.3e-08 62.4 41 61.0
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 8.3e-08 62.0 40 67.5
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 1.1e-07 61.6 41 65.9
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 1.1e-07 61.6 40 72.5
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 1.1e-07 61.6 47 61.7
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 1.1e-07 61.6 40 72.5
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.8e-07 60.8 302 26.5
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 1.8e-07 60.8 308 26.9
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 2.4e-07 60.5 273 30.4
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 3.1e-07 60.1 41 63.4
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 3.1e-07 60.1 41 63.4
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 3.1e-07 60.1 267 29.2
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 3.1e-07 60.1 267 29.2
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 4.1e-07 59.7 40 65.0
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 4.1e-07 59.7 42 57.1
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 4.1e-07 59.7 41 63.4
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 4.1e-07 59.7 41 63.4
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 4.1e-07 59.7 41 63.4
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 5.4e-07 59.3 45 55.6
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 7.0e-07 58.9 40 67.5
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 7.0e-07 58.9 47 57.4
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 7.0e-07 58.9 40 70.0
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 9.1e-07 58.5 41 63.4
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 9.1e-07 58.5 40 60.0
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 9.1e-07 58.5 40 62.5
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 9.1e-07 58.5 209 32.1
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 9.1e-07 58.5 53 54.7
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.2e-06 58.2 41 68.3
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.2e-06 58.2 41 68.3
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 2.0e-06 57.4 42 54.8
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 2.0e-06 57.4 42 54.8
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 2.0e-06 57.4 40 60.0
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 2.0e-06 57.4 44 63.6
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 2.0e-06 57.4 40 65.0
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 2.7e-06 57.0 325 26.2
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 5.9e-06 55.8 40 57.5


User provided reference genes

Program Settings