Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 2.0e-62 242.3 121 100.0
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 4.3e-33 144.8 114 71.1
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 5.6e-33 144.4 104 71.2
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.2e-32 143.3 106 72.6
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.6e-32 142.9 113 66.4
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.7e-29 132.9 121 60.3
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 3.2e-28 128.6 111 60.4
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 3.9e-26 121.7 105 62.9
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 6.6e-26 120.9 107 61.7
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.9e-25 119.4 99 56.6
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 2.5e-25 119.0 107 58.9
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.5e-25 119.0 110 58.2
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 4.3e-25 118.2 98 58.2
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.1e-24 115.9 107 61.7
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 2.1e-24 115.9 107 61.7
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.8e-24 115.5 107 57.0
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.6e-24 115.2 106 54.7
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 1.4e-23 113.2 96 59.4
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 4.0e-23 111.7 108 59.3
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.2e-22 110.2 109 60.6
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 2.0e-22 109.4 81 66.7
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 2.6e-22 109.0 111 54.1
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 2.6e-22 109.0 111 54.1
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 3.4e-22 108.6 108 59.3
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 4.4e-22 108.2 106 57.5
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.3e-21 106.7 108 57.4
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 2.9e-21 105.5 102 59.8
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 4.9e-21 104.8 92 58.7
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.4e-20 103.2 109 54.1
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.4e-20 103.2 106 54.7
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 5.4e-20 101.3 96 60.4
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 1.2e-19 100.1 101 50.5
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 2.7e-19 99.0 89 61.8
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.7e-19 99.0 109 53.2
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.7e-19 99.0 106 58.5
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 4.6e-19 98.2 98 57.1
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 4.6e-19 98.2 88 62.5
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 6.0e-19 97.8 88 60.2
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.8e-19 97.4 89 56.2
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.0e-18 97.1 89 58.4
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 1.3e-18 96.7 86 60.5
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.3e-18 96.7 89 58.4
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.7e-18 96.3 85 57.6
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.3e-18 95.9 84 63.1
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 2.3e-18 95.9 98 55.1
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 5.0e-18 94.7 89 56.2
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 5.0e-18 94.7 114 48.2
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 6.6e-18 94.4 105 50.5
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 8.6e-18 94.0 107 55.1
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 1.1e-17 93.6 100 57.0
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 1.5e-17 93.2 100 53.0
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.5e-17 93.2 93 60.2
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.5e-17 93.2 91 56.0
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.9e-17 92.8 88 56.8
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.3e-17 91.7 91 57.1
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.3e-17 91.7 91 57.1
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.3e-17 91.7 85 58.8
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.3e-17 90.9 93 54.8
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 9.5e-17 90.5 93 54.8
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 9.5e-17 90.5 89 50.6
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 1.2e-16 90.1 93 60.2
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 1.6e-16 89.7 105 51.4
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.6e-16 89.7 92 57.6
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.1e-16 89.4 93 54.8
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 2.1e-16 89.4 107 50.5
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 2.8e-16 89.0 98 56.1
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.2e-16 87.8 91 56.0
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 8.1e-16 87.4 82 51.2
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 8.1e-16 87.4 96 51.0
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.1e-15 87.0 101 52.5
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 1.4e-15 86.7 93 50.5
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 1.8e-15 86.3 88 53.4
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.2e-15 84.7 114 47.4
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 5.2e-15 84.7 113 48.7
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 6.8e-15 84.3 89 52.8
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.8e-15 84.3 89 56.2
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.9e-15 84.0 89 55.1
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 8.9e-15 84.0 89 55.1
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 1.2e-14 83.6 113 47.8
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.2e-14 83.6 110 49.1
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.2e-14 83.6 113 46.9
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 1.5e-14 83.2 81 53.1
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 1.5e-14 83.2 105 49.5
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.5e-14 83.2 88 51.1
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 2.6e-14 82.4 96 50.0
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 2.6e-14 82.4 93 51.6
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 3.4e-14 82.0 97 52.6
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 4.4e-14 81.6 82 56.1
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 5.8e-14 81.3 101 49.5
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 7.5e-14 80.9 82 56.1
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 7.5e-14 80.9 85 52.9
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 7.5e-14 80.9 98 50.0
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 9.8e-14 80.5 90 51.1
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.3e-13 80.1 87 50.6
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 1.3e-13 80.1 81 51.9
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.3e-13 80.1 99 52.5
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 1.7e-13 79.7 81 53.1
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 2.9e-13 79.0 88 53.4
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 3.7e-13 78.6 85 51.8
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.9e-13 78.2 86 50.0
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 4.9e-13 78.2 81 53.1
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 6.4e-13 77.8 98 49.0
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.4e-13 77.8 86 50.0
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.1e-12 77.0 106 45.3
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.4e-12 76.6 98 48.0
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.4e-12 76.6 124 45.2
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.4e-12 76.6 124 45.2
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.9e-12 76.3 98 48.0
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 2.4e-12 75.9 87 48.3
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.4e-12 75.9 86 53.5
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 2.4e-12 75.9 108 43.5
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 4.1e-12 75.1 86 52.3
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 4.1e-12 75.1 86 46.5
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 4.1e-12 75.1 86 46.5
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 4.1e-12 75.1 84 52.4
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 4.1e-12 75.1 84 52.4
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 5.4e-12 74.7 86 46.5
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 7.1e-12 74.3 96 46.9
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 7.1e-12 74.3 86 46.5
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 7.1e-12 74.3 100 45.0
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 9.2e-12 73.9 97 45.4
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 9.2e-12 73.9 97 45.4
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 9.2e-12 73.9 97 45.4
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 9.2e-12 73.9 86 50.0
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.2e-11 73.6 85 47.1
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 2.1e-11 72.8 98 46.9
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 2.1e-11 72.8 82 50.0
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.7e-11 72.4 96 45.8
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 2.7e-11 72.4 101 48.5
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 3.5e-11 72.0 84 52.4
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 3.5e-11 72.0 86 46.5
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 4.6e-11 71.6 84 51.2
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 4.6e-11 71.6 84 51.2
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.6e-11 71.6 86 52.3
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 6.0e-11 71.2 88 45.5
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 7.8e-11 70.9 86 53.5
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 7.8e-11 70.9 98 40.8
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.3e-10 70.1 104 48.1
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 1.7e-10 69.7 92 44.6
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 2.3e-10 69.3 83 50.6
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 2.3e-10 69.3 83 50.6
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.3e-10 69.3 98 43.9
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 2.3e-10 69.3 85 48.2
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.3e-10 69.3 88 47.7
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.3e-10 69.3 97 45.4
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 3.0e-10 68.9 91 45.1
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.0e-10 68.9 86 45.3
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 5.1e-10 68.2 90 45.6
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 6.6e-10 67.8 94 47.9
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.6e-10 67.8 121 44.6
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 8.6e-10 67.4 97 47.4
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 8.6e-10 67.4 97 40.2
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.1e-09 67.0 103 42.7
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.1e-09 67.0 98 41.8
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.1e-09 67.0 88 45.5
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.1e-09 67.0 87 50.6
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.5e-09 66.6 91 48.4
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.9e-09 66.2 90 48.9
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.5e-09 65.9 81 44.4
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 4.3e-09 65.1 93 43.0
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 5.6e-09 64.7 87 47.1
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 9.5e-09 63.9 89 49.4
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-08 63.5 88 46.6
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 1.2e-08 63.5 85 43.5
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 1.6e-08 63.2 88 39.8
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 2.1e-08 62.8 82 46.3
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 2.8e-08 62.4 84 42.9
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.8e-08 62.4 79 45.6
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 3.6e-08 62.0 101 39.6
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.4e-07 60.1 89 44.9
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 1.4e-07 60.1 86 43.0
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 3.1e-07 58.9 75 46.7
PGSC0003DMG400013448 Solanum tuberosum HOM05D003940 ORTHO05D004461 6.8e-07 57.8 47 66.0
ATR0680G398 Amborella trichopoda HOM05D003940 ORTHO05D004461 7.6e-06 54.3 79 41.8


User provided reference genes

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