Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia04400 Actinidia chinensis HOM05D001755 ORTHO05D001665 9.1e-212 740.0 367 100.0
CSS0010978 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 7.0e-63 245.4 389 41.9
CSS0046975 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 7.0e-63 245.4 389 41.9
Dinv15987 Davidia involucrata HOM05D001755 ORTHO05D001665 1.9e-52 210.7 368 41.6
Dinv24160 Davidia involucrata HOM05D001755 ORTHO05D001665 1.9e-44 184.1 347 38.0
vmacro19953 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 4.3e-44 183.0 366 38.0
Rhsim05G0102500 Rhododendron simsii HOM05D001755 ORTHO05D001665 4.0e-42 176.4 361 38.0
Atru.chr6.1228 Acer truncatum HOM05D001755 ORTHO05D001665 1.5e-33 147.9 338 36.1
Sabra07G0092200 Salix brachista HOM05D001755 ORTHO05D001665 7.6e-33 145.6 390 33.8
QL11p023836 Quercus lobata HOM05D001755 ORTHO05D001665 1.6e-30 137.9 338 35.2
Haze_10554 Corylus avellana HOM05D001755 ORTHO05D001665 2.3e-29 134.0 343 34.7
Cfa005695 Carpinus fangiana HOM05D001755 ORTHO05D001665 8.7e-29 132.1 341 33.7
Ciclev10006463m.g Citrus clementina HOM05D001755 ORTHO05D001665 1.9e-28 131.0 339 29.2
Hma1.2p1_1093F.1_g256090 Hydrangea macrophylla HOM05D001755 ORTHO05D001665 2.8e-27 127.1 344 34.0
CiPaw.06G156800 Carya illinoinensis HOM05D001755 ORTHO05D001665 1.2e-25 121.7 318 32.1
TWI23G0561 Tripterygium wilfordii HOM05D001755 ORTHO05D001665 3.4e-25 120.2 338 29.0
Thecc.02G132100 Theobroma cacao HOM05D001755 ORTHO05D001665 3.8e-24 116.7 137 50.4
COL.COLO4_32356 Corchorus olitorius HOM05D001755 ORTHO05D001665 5.4e-23 112.8 134 50.0
Duzib132G0533 Durio zibethinus HOM05D001755 ORTHO05D001665 2.7e-22 110.5 155 48.4
Duzib052G1081 Durio zibethinus HOM05D001755 ORTHO05D001665 4.6e-22 109.8 134 45.5
Potri.017G048000 Populus trichocarpa HOM05D001755 ORTHO05D001665 6.6e-21 105.9 120 53.3
Cc02_g21020 Coffea canephora HOM05D001755 ORTHO05D001665 1.1e-20 105.1 167 37.7
TWI14G0408 Tripterygium wilfordii HOM05D001755 ORTHO05D001665 2.5e-20 104.0 134 44.8
Manes.10G102100 Manihot esculenta HOM05D001755 ORTHO05D001665 2.1e-19 100.9 120 54.2
Potri.007G112800 Populus trichocarpa HOM05D001755 ORTHO05D001665 2.8e-19 100.5 123 51.2
Manes.07G037000 Manihot esculenta HOM05D001755 ORTHO05D001665 2.4e-18 97.4 119 48.7
CiPaw.05G031200 Carya illinoinensis HOM05D001755 ORTHO05D001665 6.9e-18 95.9 137 43.8
DCAR_029188 Daucus carota HOM05D001755 ORTHO05D001665 9.0e-18 95.5 154 40.3
Cpa.g.sc1175.1 Carica papaya HOM05D001755 ORTHO05D001665 1.5e-17 94.7 141 41.8
Gohir.A03G175900 Gossypium hirsutum HOM05D001755 ORTHO05D001665 3.4e-17 93.6 141 41.8
Oeu022086.1 Olea europaea HOM05D001755 ORTHO05D001665 4.5e-17 93.2 119 45.4
TAR381G1650 Trochodendron aralioides HOM05D001755 ORTHO05D001665 4.5e-17 93.2 154 37.7
Sabra17G0032400 Salix brachista HOM05D001755 ORTHO05D001665 9.9e-17 92.0 84 59.5
Sabra17G0033700 Salix brachista HOM05D001755 ORTHO05D001665 9.9e-17 92.0 84 59.5
TAR376G0504 Trochodendron aralioides HOM05D001755 ORTHO05D001665 1.1e-15 88.6 154 37.0
Actinidia10367 Actinidia chinensis HOM05D001755 ORTHO05D001665 1.9e-15 87.8 161 37.9
Gohir.D02G199700 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.9e-15 87.8 141 40.4
FvH4_5g35810 Fragaria vesca HOM05D001755 ORTHO05D001665 4.2e-15 86.7 138 37.7
CsaV3_4G009670 Cucumis sativus L. HOM05D001755 ORTHO05D001665 5.4e-15 86.3 176 36.9
Gorai.005G224300 Gossypium raimondii HOM05D001755 ORTHO05D001665 5.4e-15 86.3 141 40.4
Solyc01g105690.2 Solanum lycopersicum HOM05D001755 ORTHO05D001665 7.1e-15 85.9 149 43.0
Sopen01g048140 Solanum pennellii HOM05D001755 ORTHO05D001665 9.3e-15 85.5 149 43.0
FAN18G0229 Fragaria x ananassa HOM05D001755 ORTHO05D001665 1.6e-14 84.7 138 37.0
Actinidia25389 Actinidia chinensis HOM05D001755 ORTHO05D001665 2.1e-14 84.3 138 47.1
Lj6g0012273 Lotus japonicus HOM05D001755 ORTHO05D001665 2.1e-14 84.3 159 40.9
CANSAT11G0868 Cannabis sativa HOM05D001755 ORTHO05D001665 4.6e-14 83.2 132 42.4
MELO3C024839.2 Cucumis melo HOM05D001755 ORTHO05D001665 4.6e-14 83.2 167 35.3
PGSC0003DMG400033578 Solanum tuberosum HOM05D001755 ORTHO05D001665 4.6e-14 83.2 160 40.0
TAR628G0401 Trochodendron aralioides HOM05D001755 ORTHO05D001665 4.6e-14 83.2 154 35.7
MSTRG.27812 Avicennia marina HOM05D001755 ORTHO05D001665 1.3e-13 81.6 137 40.9
MSTRG.5276 Avicennia marina HOM05D001755 ORTHO05D001665 1.3e-13 81.6 118 44.9
Potri.002G103300 Populus trichocarpa HOM05D001755 ORTHO05D001665 1.8e-13 81.3 136 38.2
FAN13G1646 Fragaria x ananassa HOM05D001755 ORTHO05D001665 3.0e-13 80.5 138 35.5
Sed0009224 Sechium edule HOM05D001755 ORTHO05D001665 3.9e-13 80.1 134 41.0
Cfa013701 Carpinus fangiana HOM05D001755 ORTHO05D001665 5.1e-13 79.7 162 36.4
ClCG10G009540 Citrullus lanatus HOM05D001755 ORTHO05D001665 8.7e-13 79.0 167 35.9
FAN04G1269 Fragaria x ananassa HOM05D001755 ORTHO05D001665 8.7e-13 79.0 138 35.5
Nitab4.5_0001264g0220 Nicotiana tabacum HOM05D001755 ORTHO05D001665 8.7e-13 79.0 137 44.5
Oeu029675.1 Olea europaea HOM05D001755 ORTHO05D001665 1.1e-12 78.6 134 37.3
CsaV3_7G007030 Cucumis sativus L. HOM05D001755 ORTHO05D001665 1.9e-12 77.8 134 39.6
DCAR_012866 Daucus carota HOM05D001755 ORTHO05D001665 1.9e-12 77.8 387 26.6
MELO3C018591.2 Cucumis melo HOM05D001755 ORTHO05D001665 2.5e-12 77.4 134 39.6
Nitab4.5_0002650g0060 Nicotiana tabacum HOM05D001755 ORTHO05D001665 2.5e-12 77.4 135 43.0
RcHm_v2.0_Chr7g0237511 Rosa chinensis HOM05D001755 ORTHO05D001665 3.3e-12 77.0 139 37.4
Actinidia30810 Actinidia chinensis HOM05D001755 ORTHO05D001665 4.3e-12 76.6 106 44.3
arahy.Tifrunner.gnm1.ann1.NI9N2T Arachis hypogaea HOM05D001755 ORTHO05D001665 4.3e-12 76.6 142 37.3
Haze_22345 Corylus avellana HOM05D001755 ORTHO05D001665 4.3e-12 76.6 162 35.2
Peaxi162Scf00299g00815 Petunia axillaris HOM05D001755 ORTHO05D001665 4.3e-12 76.6 131 45.0
Prupe.1G527600 Prunus persica HOM05D001755 ORTHO05D001665 4.3e-12 76.6 137 38.7
MSTRG.16609 Avicennia marina HOM05D001755 ORTHO05D001665 7.4e-12 75.9 140 39.3
CAN.G523.29 Capsicum annuum HOM05D001755 ORTHO05D001665 9.6e-12 75.5 123 44.7
CiPaw.07G168200 Carya illinoinensis HOM05D001755 ORTHO05D001665 9.6e-12 75.5 136 36.8
Prupe.8G067600 Prunus persica HOM05D001755 ORTHO05D001665 9.6e-12 75.5 117 38.5
Solyc04g076030.3 Solanum lycopersicum HOM05D001755 ORTHO05D001665 9.6e-12 75.5 203 31.0
arahy.Tifrunner.gnm1.ann1.KFP2BM Arachis hypogaea HOM05D001755 ORTHO05D001665 1.3e-11 75.1 142 36.6
COL.COLO4_35196 Corchorus olitorius HOM05D001755 ORTHO05D001665 1.3e-11 75.1 137 35.8
MELO3C011067.2 Cucumis melo HOM05D001755 ORTHO05D001665 1.6e-11 74.7 140 39.3
Hma1.2p1_0010F.1_g007010 Hydrangea macrophylla HOM05D001755 ORTHO05D001665 1.6e-11 74.7 141 36.9
Gohir.D05G224000 Gossypium hirsutum HOM05D001755 ORTHO05D001665 2.1e-11 74.3 136 36.8
Medtr2g009360 Medicago truncatula HOM05D001755 ORTHO05D001665 2.1e-11 74.3 137 40.1
Sabra02G0081000 Salix brachista HOM05D001755 ORTHO05D001665 2.1e-11 74.3 136 37.5
CsaV3_2G030090 Cucumis sativus L. HOM05D001755 ORTHO05D001665 4.8e-11 73.2 139 38.1
TAR625G0049 Trochodendron aralioides HOM05D001755 ORTHO05D001665 4.8e-11 73.2 134 36.6
VMungo0540G1031 Vigna mungo HOM05D001755 ORTHO05D001665 4.8e-11 73.2 143 42.0
Ca_00156_v3 Cicer arietinum L. HOM05D001755 ORTHO05D001665 6.2e-11 72.8 137 38.7
Hund16874 Selenicereus undatus HOM05D001755 ORTHO05D001665 8.1e-11 72.4 387 24.8
PSO541G2838 Papaver somniferum HOM05D001755 ORTHO05D001665 1.1e-10 72.0 137 32.8
PSO675G6469 Papaver somniferum HOM05D001755 ORTHO05D001665 1.1e-10 72.0 137 33.6
Hma1.2p1_0125F.1_g059100 Hydrangea macrophylla HOM05D001755 ORTHO05D001665 1.4e-10 71.6 148 35.1
Gohir.A05G221300 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.8e-10 71.2 136 36.0
Gorai.009G231400 Gossypium raimondii HOM05D001755 ORTHO05D001665 1.8e-10 71.2 136 36.0
PGSC0003DMG400012901 Solanum tuberosum HOM05D001755 ORTHO05D001665 1.8e-10 71.2 203 29.1
Dinv42637 Davidia involucrata HOM05D001755 ORTHO05D001665 2.4e-10 70.9 308 28.9
CiPaw.08G054100 Carya illinoinensis HOM05D001755 ORTHO05D001665 4.0e-10 70.1 138 35.5
Glyma.15G056600 Glycine max HOM05D001755 ORTHO05D001665 4.0e-10 70.1 141 42.6
MD04G1047600 Malus domestica HOM05D001755 ORTHO05D001665 4.0e-10 70.1 140 37.9
Oeu010536.1 Olea europaea HOM05D001755 ORTHO05D001665 4.0e-10 70.1 140 37.9
Phvul.006G203400 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 4.0e-10 70.1 140 37.1
Rhsim07G0210000 Rhododendron simsii HOM05D001755 ORTHO05D001665 5.3e-10 69.7 159 34.6
Sopen04g029980 Solanum pennellii HOM05D001755 ORTHO05D001665 5.3e-10 69.7 135 34.1
Peaxi162Scf00160g01119 Petunia axillaris HOM05D001755 ORTHO05D001665 6.9e-10 69.3 135 35.6
Lalb_Chr05g0217651 Lupinus albus HOM05D001755 ORTHO05D001665 9.0e-10 68.9 147 40.8
CAN.G1658.8 Capsicum annuum HOM05D001755 ORTHO05D001665 1.2e-09 68.6 138 34.1
Peaxi162Scf00281g00710 Petunia axillaris HOM05D001755 ORTHO05D001665 1.2e-09 68.6 139 36.7
Duzib116G0593 Durio zibethinus HOM05D001755 ORTHO05D001665 1.5e-09 68.2 139 34.5
MD15G1381700 Malus domestica HOM05D001755 ORTHO05D001665 1.5e-09 68.2 136 36.0
Manes.18G061300 Manihot esculenta HOM05D001755 ORTHO05D001665 1.5e-09 68.2 135 33.3
EL10Ac1g01104 Beta vulgaris HOM05D001755 ORTHO05D001665 2.0e-09 67.8 135 35.6
Sed0006645 Sechium edule HOM05D001755 ORTHO05D001665 2.0e-09 67.8 134 37.3
TPR.G9504 Trifolium pratense HOM05D001755 ORTHO05D001665 2.0e-09 67.8 143 40.6
Lj4P733T2 Lonicera japonica HOM05D001755 ORTHO05D001665 3.4e-09 67.0 146 34.2
MD08G1192900 Malus domestica HOM05D001755 ORTHO05D001665 3.4e-09 67.0 136 35.3
Sed0024443 Sechium edule HOM05D001755 ORTHO05D001665 3.4e-09 67.0 164 32.9
Dinv44836 Davidia involucrata HOM05D001755 ORTHO05D001665 4.5e-09 66.6 293 26.6
Lalb_Chr08g0242361 Lupinus albus HOM05D001755 ORTHO05D001665 4.5e-09 66.6 136 32.4
Nn1g05505 Nelumbo nucifera HOM05D001755 ORTHO05D001665 4.5e-09 66.6 310 26.1
Rhsim06G0074100 Rhododendron simsii HOM05D001755 ORTHO05D001665 5.8e-09 66.2 121 36.4
Cc10_g15590 Coffea canephora HOM05D001755 ORTHO05D001665 7.6e-09 65.9 137 35.8
Lj4C91T0 Lonicera japonica HOM05D001755 ORTHO05D001665 9.9e-09 65.5 132 37.1
Nn5g29941 Nelumbo nucifera HOM05D001755 ORTHO05D001665 9.9e-09 65.5 310 26.1
Lalb_Chr17g0344411 Lupinus albus HOM05D001755 ORTHO05D001665 1.3e-08 65.1 136 33.8
PGR042G1641 Punica granatum HOM05D001755 ORTHO05D001665 1.7e-08 64.7 182 32.4
QL09p017152 Quercus lobata HOM05D001755 ORTHO05D001665 1.7e-08 64.7 139 33.1
VMungo0251G2544 Vigna mungo HOM05D001755 ORTHO05D001665 1.7e-08 64.7 142 34.5
AL8G41700 Arabidopsis lyrata HOM05D001755 ORTHO05D001665 2.2e-08 64.3 143 42.0
THA.LOC104818447 Tarenaya hassleriana HOM05D001755 ORTHO05D001665 2.2e-08 64.3 140 40.7
Glyma.04G092900 Glycine max HOM05D001755 ORTHO05D001665 2.9e-08 63.9 162 29.6
PGSC0003DMG400002044 Solanum tuberosum HOM05D001755 ORTHO05D001665 2.9e-08 63.9 134 32.8
Sopen12g029930 Solanum pennellii HOM05D001755 ORTHO05D001665 3.8e-08 63.5 135 33.3
AT5G64340 Arabidopsis thaliana HOM05D001755 ORTHO05D001665 4.9e-08 63.2 141 41.1
Cpa.g.c31184 Carica papaya HOM05D001755 ORTHO05D001665 4.9e-08 63.2 158 31.0
Nitab4.5_0001507g0060 Nicotiana tabacum HOM05D001755 ORTHO05D001665 4.9e-08 63.2 135 38.5
Nitab4.5_0002025g0030 Nicotiana tabacum HOM05D001755 ORTHO05D001665 4.9e-08 63.2 135 28.9
Sp2g27410 Schrenkiella parvula HOM05D001755 ORTHO05D001665 4.9e-08 63.2 168 35.7
Glyma.08G069700 Glycine max HOM05D001755 ORTHO05D001665 8.4e-08 62.4 143 37.1
Thecc.08G067700 Theobroma cacao HOM05D001755 ORTHO05D001665 8.4e-08 62.4 136 33.8
Actinidia29609 Actinidia chinensis HOM05D001755 ORTHO05D001665 1.1e-07 62.0 126 34.9
Glyma.06G094700 Glycine max HOM05D001755 ORTHO05D001665 1.1e-07 62.0 161 30.4
Nitab4.5_0004381g0040 Nicotiana tabacum HOM05D001755 ORTHO05D001665 1.1e-07 62.0 135 29.6
Aqoxy6G01464 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 1.4e-07 61.6 173 31.8
arahy.Tifrunner.gnm1.ann1.ZL8253 Arachis hypogaea HOM05D001755 ORTHO05D001665 1.4e-07 61.6 136 33.8
Thhalv10005425m.g Eutrema salsugineum HOM05D001755 ORTHO05D001665 1.4e-07 61.6 204 35.3
Glyma.07G181000 Glycine max HOM05D001755 ORTHO05D001665 1.9e-07 61.2 144 36.1
Lalb_Chr11g0065121 Lupinus albus HOM05D001755 ORTHO05D001665 1.9e-07 61.2 141 33.3
Potri.005G158100 Populus trichocarpa HOM05D001755 ORTHO05D001665 1.9e-07 61.2 136 32.4
arahy.Tifrunner.gnm1.ann1.5W7NNK Arachis hypogaea HOM05D001755 ORTHO05D001665 2.4e-07 60.8 134 29.9
Hund00371 Selenicereus undatus HOM05D001755 ORTHO05D001665 2.4e-07 60.8 139 31.7
Solyc12g087890.3 Solanum lycopersicum HOM05D001755 ORTHO05D001665 2.4e-07 60.8 135 33.3
Psat1g215520 Pisum sativum HOM05D001755 ORTHO05D001665 3.2e-07 60.5 141 44.0
Lalb_Chr04g0252991 Lupinus albus HOM05D001755 ORTHO05D001665 5.5e-07 59.7 137 31.4
Phvul.009G038200 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 7.1e-07 59.3 138 34.8
Phvul.002G211200 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 9.3e-07 58.9 142 33.1
Hund27005 Selenicereus undatus HOM05D001755 ORTHO05D001665 9.3e-07 58.9 136 30.9
Ciclev10003472m.g Citrus clementina HOM05D001755 ORTHO05D001665 1.2e-06 58.5 138 30.4
ECA247G1217 Erigeron canadensis HOM05D001755 ORTHO05D001665 1.2e-06 58.5 184 29.9
Gohir.D05G267500 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.2e-06 58.5 139 33.1
Gorai.009G279600 Gossypium raimondii HOM05D001755 ORTHO05D001665 1.2e-06 58.5 139 33.1
TWI12G0724 Tripterygium wilfordii HOM05D001755 ORTHO05D001665 2.1e-06 57.8 140 31.4
CAN.G991.1 Capsicum annuum HOM05D001755 ORTHO05D001665 2.7e-06 57.4 131 31.3
CARHR278270 Cardamine hirsuta HOM05D001755 ORTHO05D001665 2.7e-06 57.4 200 33.5
Manes.02G146900 Manihot esculenta HOM05D001755 ORTHO05D001665 2.7e-06 57.4 135 31.1
Nitab4.5_0011953g0010 Nicotiana tabacum HOM05D001755 ORTHO05D001665 2.7e-06 57.4 134 39.6
AL6G19860 Arabidopsis lyrata HOM05D001755 ORTHO05D001665 3.5e-06 57.0 138 34.1
EL10Ac9g22086 Beta vulgaris HOM05D001755 ORTHO05D001665 3.5e-06 57.0 393 23.9
VMungo1309G0268 Vigna mungo HOM05D001755 ORTHO05D001665 3.5e-06 57.0 137 32.1
AUR62019010 Chenopodium quinoa HOM05D001755 ORTHO05D001665 4.6e-06 56.6 170 31.2
Sed0020961 Sechium edule HOM05D001755 ORTHO05D001665 4.6e-06 56.6 137 37.2
Lj4g0020895 Lotus japonicus HOM05D001755 ORTHO05D001665 6.0e-06 56.2 141 36.2
MSTRG.10269 Avicennia marina HOM05D001755 ORTHO05D001665 7.9e-06 55.8 126 31.7
Duzib093G0625 Durio zibethinus HOM05D001755 ORTHO05D001665 7.9e-06 55.8 136 33.8
Phvul.008G179500 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 7.9e-06 55.8 141 31.2


User provided reference genes

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