Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia04142 Actinidia chinensis HOM05D007718 ORTHO05D009752 7.5e-71 270.4 135 100.0
Dinv22108 Davidia involucrata HOM05D007718 ORTHO05D009752 3.0e-43 178.7 135 66.7
Rhsim01G0004700 Rhododendron simsii HOM05D007718 ORTHO05D009752 8.6e-43 177.2 132 65.9
GSVIVG01036292001 Vitis vinifera HOM05D007718 ORTHO05D009752 1.1e-37 160.2 136 61.8
TWI18G0705 Tripterygium wilfordii HOM05D007718 ORTHO05D009752 3.2e-37 158.7 136 60.3
Prupe.8G007200 Prunus persica HOM05D007718 ORTHO05D009752 5.6e-34 147.9 132 56.8
Nn5g27289 Nelumbo nucifera HOM05D007718 ORTHO05D009752 1.8e-32 142.9 120 56.7
PSO170G0967 Papaver somniferum HOM05D007718 ORTHO05D009752 3.1e-32 142.1 133 57.1
RcHm_v2.0_Chr6g0251251 Rosa chinensis HOM05D007718 ORTHO05D009752 3.1e-32 142.1 131 56.5
QL08p027549 Quercus lobata HOM05D007718 ORTHO05D009752 3.4e-31 138.7 131 55.0
PSO017G4737 Papaver somniferum HOM05D007718 ORTHO05D009752 4.4e-31 138.3 132 53.8
Atru.chr13.2493 Acer truncatum HOM05D007718 ORTHO05D009752 5.8e-31 137.9 140 51.4
Potri.019G071800 Populus trichocarpa HOM05D007718 ORTHO05D009752 2.2e-30 136.0 138 54.3
Manes.02G205384 Manihot esculenta HOM05D007718 ORTHO05D009752 4.9e-30 134.8 134 51.5
Manes.02G201400 Manihot esculenta HOM05D007718 ORTHO05D009752 8.4e-30 134.0 134 51.5
Atru.chr13.2505 Acer truncatum HOM05D007718 ORTHO05D009752 1.1e-29 133.7 141 49.6
Manes.02G221600 Manihot esculenta HOM05D007718 ORTHO05D009752 1.1e-29 133.7 111 56.8
FAN27G3322 Fragaria x ananassa HOM05D007718 ORTHO05D009752 1.4e-29 133.3 104 58.7
CiPaw.04G009400 Carya illinoinensis HOM05D007718 ORTHO05D009752 3.2e-29 132.1 126 52.4
Thecc.08G178100 Theobroma cacao HOM05D007718 ORTHO05D009752 4.2e-29 131.7 98 63.3
MELO3C022171.2 Cucumis melo HOM05D007718 ORTHO05D009752 9.3e-29 130.6 102 59.8
Manes.02G201100 Manihot esculenta HOM05D007718 ORTHO05D009752 9.3e-29 130.6 134 50.7
ClCG08G001110 Citrullus lanatus HOM05D007718 ORTHO05D009752 1.6e-28 129.8 108 60.2
MD05G1004000 Malus domestica HOM05D007718 ORTHO05D009752 3.5e-28 128.6 107 59.8
CANSAT21G0081 Cannabis sativa HOM05D007718 ORTHO05D009752 1.0e-27 127.1 93 63.4
CANSAT21G2143 Cannabis sativa HOM05D007718 ORTHO05D009752 1.0e-27 127.1 93 63.4
Gohir.A08G230000 Gossypium hirsutum HOM05D007718 ORTHO05D009752 2.3e-27 125.9 90 63.3
Ciclev10022933m.g Citrus clementina HOM05D007718 ORTHO05D009752 6.6e-27 124.4 108 59.3
Aqoxy5G00833 Aquilegia oxysepala HOM05D007718 ORTHO05D009752 1.1e-26 123.6 111 53.2
Gohir.D08G250400 Gossypium hirsutum HOM05D007718 ORTHO05D009752 2.5e-26 122.5 90 61.1
Gorai.004G267100 Gossypium raimondii HOM05D007718 ORTHO05D009752 2.5e-26 122.5 90 61.1
Sed0001698 Sechium edule HOM05D007718 ORTHO05D009752 2.5e-26 122.5 117 51.3
Ca_07513_v3 Cicer arietinum L. HOM05D007718 ORTHO05D009752 5.6e-26 121.3 133 48.1
Migut.C01378 Erythranthe guttata HOM05D007718 ORTHO05D009752 5.6e-26 121.3 126 46.8
SGA_v2.0_scaffold24G10646 Striga asiatica HOM05D007718 ORTHO05D009752 5.6e-26 121.3 86 62.8
Phvul.008G126000 Phaseolus vulgaris HOM05D007718 ORTHO05D009752 7.3e-26 120.9 133 49.6
Duzib177G0547 Durio zibethinus HOM05D007718 ORTHO05D009752 1.3e-25 120.2 88 62.5
Lalb_Chr03g0041731 Lupinus albus HOM05D007718 ORTHO05D009752 2.1e-25 119.4 110 53.6
EL10Ac1g01266 Beta vulgaris HOM05D007718 ORTHO05D009752 8.1e-25 117.5 109 53.2
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 8.1e-25 117.5 114 48.2
Ah.05g170340 Amaranthus hybridus HOM05D007718 ORTHO05D009752 1.1e-24 117.1 116 49.1
TPR.G23283 Trifolium pratense HOM05D007718 ORTHO05D009752 3.1e-24 115.5 130 48.5
arahy.Tifrunner.gnm1.ann1.KNF5LM Arachis hypogaea HOM05D007718 ORTHO05D009752 6.9e-24 114.4 134 44.0
Glyma.08G353800 Glycine max HOM05D007718 ORTHO05D009752 1.2e-23 113.6 103 55.3
TAR383G0451 Trochodendron aralioides HOM05D007718 ORTHO05D009752 1.2e-23 113.6 83 68.7
Medtr7g057760 Medicago truncatula HOM05D007718 ORTHO05D009752 4.5e-23 111.7 104 53.8
arahy.Tifrunner.gnm1.ann1.NNV5AG Arachis hypogaea HOM05D007718 ORTHO05D009752 5.8e-23 111.3 134 43.3
MSTRG.1597 Avicennia marina HOM05D007718 ORTHO05D009752 1.3e-22 110.2 88 52.3
COL.COLO4_05200 Corchorus olitorius HOM05D007718 ORTHO05D009752 1.3e-22 110.2 92 54.3
THA.LOC104807782 Tarenaya hassleriana HOM05D007718 ORTHO05D009752 1.3e-22 110.2 95 54.7
CDE04G1586 Ceratophyllum demersum HOM05D007718 ORTHO05D009752 2.2e-22 109.4 90 58.9
CSS0008152 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 6.4e-22 107.8 64 79.7
Lsat_1_v5_gn_3_36061 Lactuca sativa HOM05D007718 ORTHO05D009752 6.4e-22 107.8 128 42.2
HanXRQChr09g0267041 Helianthus annuus HOM05D007718 ORTHO05D009752 1.1e-21 107.1 104 49.0
AT2G21195 Arabidopsis thaliana HOM05D007718 ORTHO05D009752 2.3e-19 99.4 67 64.2
vmacro13123 Vaccinium macrocarpon HOM05D007718 ORTHO05D009752 3.9e-19 98.6 65 72.3
AL4G10300 Arabidopsis lyrata HOM05D007718 ORTHO05D009752 5.1e-19 98.2 57 75.4
CARHR112060 Cardamine hirsuta HOM05D007718 ORTHO05D009752 5.1e-19 98.2 57 75.4
ATR1089G029 Amborella trichopoda HOM05D007718 ORTHO05D009752 6.7e-19 97.8 100 46.0
C04p50420 Brassica napus HOM05D007718 ORTHO05D009752 8.7e-19 97.4 52 80.8
BolC4t26639H Brassica oleracea HOM05D007718 ORTHO05D009752 8.7e-19 97.4 52 80.8
FvH4_2g00852 Fragaria vesca HOM05D007718 ORTHO05D009752 8.7e-19 97.4 68 64.7
HPP92_012514 Vanilla planifolia HOM05D007718 ORTHO05D009752 8.7e-19 97.4 129 42.6
Carub.0004s0023 Capsella rubella HOM05D007718 ORTHO05D009752 1.9e-18 96.3 57 71.9
Nn5g31449 Nelumbo nucifera HOM05D007718 ORTHO05D009752 2.5e-18 95.9 65 69.2
Thhalv10000395m.g Eutrema salsugineum HOM05D007718 ORTHO05D009752 4.3e-18 95.1 52 76.9
A04p15950 Brassica napus HOM05D007718 ORTHO05D009752 5.6e-18 94.7 52 76.9
SalBow7G2847 Salvia bowleyana HOM05D007718 ORTHO05D009752 7.4e-18 94.4 111 45.0
unitig_26.g9859 Utricularia gibba HOM05D007718 ORTHO05D009752 1.6e-17 93.2 76 57.9
BraA04t17231Z Brassica rapa HOM05D007718 ORTHO05D009752 2.8e-17 92.4 55 74.5
AUR62038531 Chenopodium quinoa HOM05D007718 ORTHO05D009752 8.1e-17 90.9 86 50.0
Oeu020544.1 Olea europaea HOM05D007718 ORTHO05D009752 1.1e-16 90.5 186 33.9
Cc10_g08650 Coffea canephora HOM05D007718 ORTHO05D009752 1.8e-16 89.7 80 46.2
Peaxi162Scf00048g00419 Petunia axillaris HOM05D007718 ORTHO05D009752 4.0e-16 88.6 56 69.6
Os07g0265100 Oryza sativa ssp. japonica HOM05D007718 ORTHO05D009752 2.6e-15 85.9 61 57.4
FAN20G0290 Fragaria x ananassa HOM05D005243 ORTHO05D009752 2.2e-14 82.8 68 64.7
Zm00001eb304750 Zea mays HOM05D007718 ORTHO05D009752 3.8e-14 82.0 68 52.9
Psat3g145480 Pisum sativum HOM05D007718 ORTHO05D009752 4.2e-13 78.6 73 50.7
SEGI_14522 Sequoiadendron giganteum HOM05D007718 ORTHO05D009752 9.3e-13 77.4 79 48.1
Lj1g0018023 Lotus japonicus HOM05D007718 ORTHO05D009752 3.5e-12 75.5 70 51.4
Aa31LG7G15310 Aethionema arabicum HOM05D007718 ORTHO05D009752 3.3e-10 68.9 39 74.4
Mapoly0002s0003 Marchantia polymorpha HOM05D007718 ORTHO05D009752 3.3e-10 68.9 90 38.9
BcaC02g08810 Brassica carinata HOM05D007718 ORTHO05D009752 5.6e-10 68.2 33 84.8
Aa31sc115G10 Aethionema arabicum HOM05D007718 ORTHO05D009752 7.4e-10 67.8 36 75.0
CsaV3_5G039910 Cucumis sativus L. HOM05D007718 ORTHO05D009752 7.4e-10 67.8 72 45.8
AagrBONN_evm.TU.Sc2ySwM_344.3280 Anthoceros agrestis HOM05D007718 ORTHO05D009752 1.1e-08 63.9 70 40.0
VMungo1383G3332 Vigna mungo HOM05D000479 ORTHO05D001285 2.0e-07 59.7 35 74.3
Peaxi162Scf00078g00626 Petunia axillaris HOM05D007718 ORTHO05D009752 2.9e-06 55.8 97 32.0


User provided reference genes

Program Settings