Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 0.0e+00 1286.9 659 100.0
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 3.8e-269 931.4 661 76.4
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 5.0e-245 851.3 671 69.4
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 2.9e-232 808.9 660 66.7
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.6e-214 750.0 662 61.9
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 2.3e-205 719.5 663 61.2
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 3.3e-204 715.7 664 60.7
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 3.0e-197 692.6 661 58.4
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 1.2e-193 680.6 527 70.2
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 6.4e-192 674.9 663 58.1
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 1.9e-191 673.3 663 56.4
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.6e-190 670.2 663 57.9
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 3.9e-189 665.6 663 57.0
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 1.5e-185 653.7 661 54.5
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 1.5e-185 653.7 662 55.1
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 1.7e-184 650.2 661 57.2
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 2.1e-182 643.3 661 57.2
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 3.5e-182 642.5 669 54.4
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 7.9e-182 641.3 664 53.8
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 3.1e-178 629.4 665 56.1
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 3.1e-178 629.4 633 55.9
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 1.2e-177 627.5 661 53.3
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 2.6e-177 626.3 661 53.0
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 1.3e-176 624.0 664 53.2
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 4.9e-176 622.1 714 52.9
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 2.5e-175 619.8 725 52.0
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.2e-175 619.4 668 54.3
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 7.1e-175 618.2 664 54.4
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 3.9e-173 612.5 668 53.9
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.3e-171 607.4 663 53.7
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 1.6e-171 607.1 661 52.8
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 3.7e-171 605.9 673 52.6
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 6.9e-170 601.7 672 52.8
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.0e-169 600.1 660 51.4
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 1.3e-168 597.4 694 51.7
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 2.9e-168 596.3 668 53.7
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 2.9e-168 596.3 662 52.1
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 8.5e-168 594.7 661 51.0
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 8.5e-168 594.7 660 51.1
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 2.3e-165 586.6 639 53.4
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 8.8e-165 584.7 663 52.6
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 2.0e-164 583.6 663 51.0
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 9.7e-164 581.3 695 49.2
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 4.8e-163 578.9 666 52.9
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 8.2e-163 578.2 659 52.0
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 2.6e-161 573.2 670 51.8
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 2.2e-160 570.1 661 52.6
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 2.9e-160 569.7 666 50.9
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 2.5e-159 566.6 662 51.1
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.5e-159 566.6 663 50.5
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 5.5e-159 565.5 681 50.4
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 9.4e-159 564.7 662 50.0
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 1.2e-158 564.3 656 50.2
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 1.2e-158 564.3 662 50.0
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.4e-157 560.8 671 51.0
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 5.1e-157 558.9 661 49.9
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 1.5e-156 557.4 663 49.9
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.0e-156 557.0 667 50.5
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 3.3e-156 556.2 667 50.4
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 1.3e-155 554.3 659 50.2
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.3e-155 554.3 665 50.5
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 1.7e-155 553.9 668 50.4
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 2.2e-155 553.5 669 51.3
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 2.2e-155 553.5 665 50.5
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 3.7e-155 552.7 670 48.2
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.1e-154 549.7 660 50.2
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 4.1e-154 549.3 640 49.5
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 9.1e-154 548.1 437 68.2
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 5.9e-153 545.4 662 49.4
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 1.7e-152 543.9 667 50.1
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 5.0e-152 542.3 662 48.5
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 6.5e-152 542.0 665 49.8
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 1.9e-151 540.4 656 50.3
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 4.2e-151 539.3 660 49.5
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 4.2e-151 539.3 669 49.2
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 2.1e-150 537.0 660 48.5
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 6.1e-150 535.4 403 73.2
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 8.0e-150 535.0 639 50.9
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 1.0e-149 534.6 642 50.2
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 3.0e-149 533.1 662 48.0
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 3.9e-149 532.7 670 48.8
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 5.2e-149 532.3 675 47.7
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 5.2e-149 532.3 663 48.0
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 5.2e-149 532.3 660 49.1
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 3.3e-148 529.6 663 48.0
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 4.4e-148 529.3 632 49.2
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.3e-147 527.7 691 47.8
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.8e-147 526.6 667 47.5
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 2.4e-146 523.5 668 47.8
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 1.2e-145 521.2 638 48.4
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 1.6e-145 520.8 665 48.0
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 2.0e-145 520.4 641 49.9
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 2.6e-145 520.0 665 49.3
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.6e-145 520.0 691 47.6
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 5.9e-145 518.8 665 47.5
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 4.4e-140 502.7 668 46.3
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 7.5e-140 501.9 668 46.6
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 9.7e-140 501.5 635 49.4
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 9.1e-138 495.0 531 54.6
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 2.9e-136 490.0 679 46.4
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 2.1e-134 483.8 674 44.5
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 2.7e-134 483.4 643 45.6
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 1.4e-133 481.1 665 44.7
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 8.8e-133 478.4 662 45.5
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 4.4e-132 476.1 665 44.5
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 7.5e-132 475.3 593 49.4
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 1.7e-131 474.2 636 45.3
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 6.3e-131 472.2 635 45.5
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 6.3e-131 472.2 665 44.2
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 2.0e-129 467.2 668 46.0
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.7e-128 464.2 398 62.1
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 3.8e-128 463.0 658 44.2
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 1.5e-127 461.1 690 43.5
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 4.2e-127 459.5 256 89.8
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 4.4e-124 449.5 663 43.6
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 5.7e-124 449.1 645 44.8
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 2.2e-123 447.2 662 44.6
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 2.2e-123 447.2 665 43.6
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 2.0e-121 440.7 634 45.0
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 2.0e-121 440.7 663 43.1
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 5.0e-120 436.0 634 44.6
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 1.5e-116 424.5 640 45.9
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 2.0e-116 424.1 392 62.8
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 4.4e-116 422.9 633 43.8
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 8.3e-115 418.7 633 43.4
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 7.0e-114 415.6 601 45.3
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 2.5e-111 407.1 661 41.3
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 1.2e-110 404.8 659 42.3
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 6.8e-109 399.1 526 47.1
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 2.2e-107 394.0 526 45.2
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.4e-106 390.6 402 56.5
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 3.2e-106 390.2 338 63.0
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.7e-99 366.7 325 59.7
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 9.6e-95 352.1 650 39.4
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.3e-86 325.1 260 71.2
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 2.1e-78 297.7 274 64.2
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 1.0e-72 278.9 402 46.3
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 2.3e-72 277.7 705 32.2
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 5.8e-68 263.1 442 41.0
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 7.6e-68 262.7 343 46.1
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 2.9e-67 260.8 620 33.4
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 4.9e-67 260.0 307 50.8
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 2.7e-65 254.2 271 50.9
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 2.5e-63 247.7 238 53.8
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 3.1e-61 240.7 445 36.9
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 1.5e-60 238.4 543 35.9
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 2.0e-60 238.0 205 60.0
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.6e-60 237.7 179 71.5
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 5.0e-59 233.4 613 32.1
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 9.3e-58 229.2 368 38.9
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 4.3e-55 220.3 286 50.0
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 7.2e-50 203.0 233 50.6
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.8e-40 171.8 237 44.3
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 1.8e-37 161.8 299 36.8
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 4.1e-37 160.6 280 43.6
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 5.3e-37 160.2 304 36.5
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 9.1e-37 159.5 222 46.8
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.2e-36 159.1 95 83.2
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 2.2e-35 154.8 295 36.6
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 4.0e-32 144.1 363 32.2
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 5.9e-28 130.2 133 51.1
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 5.5e-26 123.6 253 36.8
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.2e-25 122.5 194 40.2
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 5.4e-21 107.1 232 34.5
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.5e-15 89.0 96 47.9
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 3.7e-14 84.3 88 52.3
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 1.4e-13 82.4 83 53.0
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.8e-13 82.0 71 52.1
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 2.7e-12 78.2 294 26.2
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 7.7e-12 76.6 170 34.1
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 2.9e-11 74.7 188 29.8
Nitab4.5_0000123g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.9e-11 74.7 110 49.1
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 6.6e-11 73.6 91 48.4
CSS0023890 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.6e-09 68.9 50 68.0
ATR1154G039 Amborella trichopoda HOM05D003892 ORTHO05D004522 2.2e-06 58.5 170 28.8


User provided reference genes

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