Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.4e-117 425.2 250 100.0
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 6.4e-92 341.3 246 85.4
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 4.6e-58 228.8 234 62.4
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.7e-55 219.2 244 58.6
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 8.5e-52 208.0 235 61.3
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.6e-50 203.8 240 57.1
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.0e-49 199.5 235 60.0
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 6.3e-47 191.8 246 58.1
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 6.3e-47 191.8 246 58.1
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 4.5e-45 185.7 246 54.1
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.4e-43 180.6 253 56.1
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 4.2e-43 179.1 240 50.8
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 7.2e-43 178.3 254 47.2
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 1.2e-42 177.6 250 50.0
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 6.1e-42 175.3 249 46.2
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 2.3e-41 173.3 250 49.2
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 6.7e-41 171.8 243 58.4
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 6.7e-41 171.8 243 46.5
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.1e-40 171.0 242 50.0
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 1.5e-40 170.6 247 47.4
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.5e-40 170.6 236 50.8
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 2.0e-40 170.2 247 47.4
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 2.6e-40 169.9 250 48.8
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 2.6e-40 169.9 252 49.6
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 3.3e-40 169.5 254 46.5
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 3.3e-40 169.5 247 49.4
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.4e-40 169.1 239 46.9
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 9.7e-40 167.9 244 46.3
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.3e-39 167.5 247 49.4
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 1.7e-39 167.2 257 51.4
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 1.7e-39 167.2 242 49.6
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 3.7e-39 166.0 249 45.8
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 3.7e-39 166.0 249 45.8
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.8e-39 165.6 244 45.9
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 4.8e-39 165.6 240 50.0
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 4.8e-39 165.6 205 62.0
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 6.3e-39 165.2 244 45.5
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 6.3e-39 165.2 240 50.0
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.1e-38 164.5 255 54.9
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 1.1e-38 164.5 249 50.6
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 2.4e-38 163.3 240 49.2
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 9.1e-38 161.4 244 51.2
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 9.1e-38 161.4 244 51.2
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 3.4e-37 159.5 242 45.0
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 3.4e-37 159.5 241 49.4
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 5.9e-37 158.7 236 51.3
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 7.7e-37 158.3 232 44.0
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.0e-36 157.9 242 54.1
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 1.3e-36 157.5 245 49.0
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.7e-36 157.1 245 45.3
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 3.8e-36 156.0 242 46.3
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 5.0e-36 155.6 241 48.5
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 5.0e-36 155.6 240 46.7
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 5.0e-36 155.6 234 50.4
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.4e-35 154.1 241 46.9
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 1.9e-35 153.7 247 45.3
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 2.5e-35 153.3 244 45.1
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 3.2e-35 152.9 243 43.6
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 7.2e-35 151.8 239 46.4
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.2e-35 151.8 232 44.8
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 2.7e-34 149.8 251 47.8
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 2.7e-34 149.8 241 44.8
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 1.4e-33 147.5 252 44.8
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.8e-33 147.1 241 46.9
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.8e-33 147.1 279 42.7
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 3.0e-33 146.4 249 46.6
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 3.0e-33 146.4 229 41.9
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.2e-33 145.6 228 46.9
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.2e-33 145.6 241 51.0
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 6.7e-33 145.2 241 42.3
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 6.7e-33 145.2 245 44.9
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.1e-32 144.4 241 44.8
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.1e-32 144.4 241 44.8
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.1e-32 144.4 240 41.7
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 4.4e-32 142.5 237 45.6
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 4.4e-32 142.5 249 42.6
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 5.7e-32 142.1 250 45.2
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.2e-31 140.2 241 49.8
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.2e-31 140.2 242 41.3
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 3.7e-31 139.4 234 40.6
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.7e-31 139.4 241 44.0
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 7.0e-30 135.2 231 45.5
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 9.1e-30 134.8 258 47.7
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.2e-29 134.4 193 46.6
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 2.6e-29 133.3 238 42.9
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 2.6e-29 133.3 249 41.0
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 3.5e-29 132.9 237 37.6
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 4.5e-29 132.5 266 41.7
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.9e-29 132.1 241 42.3
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 7.7e-29 131.7 234 43.6
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 6.5e-28 128.6 260 45.8
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 2.5e-27 126.7 237 48.1
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 5.5e-27 125.6 239 41.4
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 1.6e-26 124.0 238 40.3
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 1.6e-26 124.0 235 41.3
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.0e-25 119.8 236 35.2
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 3.0e-25 119.8 237 33.8
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 5.2e-25 119.0 241 34.9
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 5.7e-24 115.5 236 37.7
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 7.5e-24 115.2 236 35.6
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 9.7e-24 114.8 143 46.9
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 8.2e-23 111.7 245 34.3
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 5.3e-22 109.0 236 33.5
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 7.0e-22 108.6 247 33.2
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.2e-21 107.8 238 34.0
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 3.5e-21 106.3 259 35.1
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 5.9e-21 105.5 234 35.0
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 1.3e-20 104.4 237 38.0
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.3e-20 104.4 149 44.3
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.7e-20 104.0 229 33.6
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 2.2e-20 103.6 226 33.2
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.2e-20 103.6 238 34.9
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 5.0e-20 102.4 236 37.7
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 5.0e-20 102.4 236 37.7
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.5e-19 100.9 234 34.6
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 5.5e-19 99.0 241 38.6
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 5.5e-19 99.0 244 30.3
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 5.5e-19 99.0 229 33.6
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 5.5e-19 99.0 244 30.3
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 5.5e-19 99.0 229 33.6
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 7.2e-19 98.6 233 31.8
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 7.2e-19 98.6 233 31.8
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 7.2e-19 98.6 233 31.8
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 1.4e-17 94.4 244 29.5
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 5.2e-17 92.4 244 31.6
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 6.8e-17 92.0 237 33.8
CSS0009789 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 6.8e-17 92.0 116 52.6
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.2e-16 91.3 234 32.5
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 7.5e-16 88.6 237 32.9
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 7.5e-16 88.6 232 34.5
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 6.3e-15 85.5 310 28.1
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 8.3e-15 85.1 311 28.0
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.8e-14 84.0 235 30.2
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.4e-14 83.6 242 30.6
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 3.1e-14 83.2 236 30.9
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 4.1e-14 82.8 242 28.9
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 5.4e-14 82.4 220 34.5
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 9.1e-14 81.6 315 27.3
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 9.1e-14 81.6 154 39.6
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.5e-13 79.7 117 55.6
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 1.0e-12 78.2 247 29.1
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.7e-12 77.4 226 32.3
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 2.3e-12 77.0 202 31.7
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.9e-11 73.9 240 29.6
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 4.2e-11 72.8 218 31.7
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 1.2e-08 64.7 39 64.1
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 2.0e-08 63.9 241 31.5
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 5.7e-08 62.4 155 35.5
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 2.8e-07 60.1 100 35.0
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 4.9e-07 59.3 37 62.2
Nn6g33581 Nelumbo nucifera HOM05D004742 ORTHO05D005677 8.3e-07 58.5 62 48.4
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.1e-06 58.2 137 39.4


User provided reference genes

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