Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia03325 Actinidia chinensis HOM05D006909 ORTHO05D008682 1.4e-31 139.0 70 100.0
Actinidia25726 Actinidia chinensis HOM05D006909 ORTHO05D008682 3.3e-14 81.3 45 86.7
Dinv37475 Davidia involucrata HOM05D006909 ORTHO05D008682 9.7e-14 79.7 48 77.1
GSVIVG01035598001 Vitis vinifera HOM05D006909 ORTHO05D008682 1.7e-13 79.0 49 71.4
CSS0024909 Camellia sinensis var. sinensis HOM05D006909 ORTHO05D008682 1.4e-12 75.9 45 77.8
vmacro09260 Vaccinium macrocarpon HOM05D006909 ORTHO05D008682 1.8e-12 75.5 48 72.9
TAR383G0789 Trochodendron aralioides HOM05D006909 ORTHO05D008682 4.1e-12 74.3 45 77.8
vmacro22917 Vaccinium macrocarpon HOM05D006909 ORTHO05D008682 4.1e-12 74.3 45 75.6
Gorai.009G069700 Gossypium raimondii HOM05D006909 ORTHO05D008682 3.5e-11 71.2 48 70.8
Lj8A414G13 Lonicera japonica HOM05D006909 ORTHO05D008682 7.7e-11 70.1 51 66.7
Migut.A00519 Erythranthe guttata HOM05D006909 ORTHO05D008682 1.3e-10 69.3 45 71.1
Solyc08g074450.3 Solanum lycopersicum HOM05D006909 ORTHO05D008682 1.3e-10 69.3 45 68.9
Sopen08g023090 Solanum pennellii HOM05D006909 ORTHO05D008682 1.3e-10 69.3 45 68.9
Gorai.001G174500 Gossypium raimondii HOM05D006909 ORTHO05D008682 2.2e-10 68.6 44 72.7
Lj8A418T18 Lonicera japonica HOM05D006909 ORTHO05D008682 2.2e-10 68.6 45 73.3
Sc06g0001370 Simmondsia chinensis HOM05D006909 ORTHO05D008682 2.2e-10 68.6 57 59.6
CAN.G195.13 Capsicum annuum HOM05D006909 ORTHO05D008682 2.9e-10 68.2 45 68.9
Oeu027782.1 Olea europaea HOM05D006909 ORTHO05D008682 2.9e-10 68.2 45 73.3
DCAR_000695 Daucus carota HOM05D006909 ORTHO05D008682 3.8e-10 67.8 48 62.5
MD08G1133200 Malus domestica HOM05D006909 ORTHO05D008682 5.0e-10 67.4 48 64.6
Nitab4.5_0004102g0010 Nicotiana tabacum HOM05D006909 ORTHO05D008682 5.0e-10 67.4 45 66.7
Peaxi162Scf00213g01514 Petunia axillaris HOM05D006909 ORTHO05D008682 5.0e-10 67.4 45 66.7
HanXRQChr06g0174091 Helianthus annuus HOM05D006909 ORTHO05D008682 6.5e-10 67.0 48 64.6
QL12p024608 Quercus lobata HOM05D006909 ORTHO05D008682 8.5e-10 66.6 48 62.5
Thecc.09G001700 Theobroma cacao HOM05D006909 ORTHO05D008682 8.5e-10 66.6 48 66.7
COL.COLO4_18637 Corchorus olitorius HOM05D006909 ORTHO05D008682 1.1e-09 66.2 48 64.6
MSTRG.25805 Avicennia marina HOM05D006909 ORTHO05D008682 1.5e-09 65.9 45 66.7
Cc01_g06550 Coffea canephora HOM05D006909 ORTHO05D008682 1.5e-09 65.9 45 66.7
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 1.9e-09 65.5 45 66.7
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 1.9e-09 65.5 45 68.9
Manes.02G165700 Manihot esculenta HOM05D006909 ORTHO05D008682 1.9e-09 65.5 45 64.4
EL10Ac2g03655 Beta vulgaris HOM05D006909 ORTHO05D008682 3.2e-09 64.7 50 60.0
Cpa.g.sc117.16 Carica papaya HOM05D006909 ORTHO05D008682 3.2e-09 64.7 45 64.4
CiPaw.07G215300 Carya illinoinensis HOM05D006909 ORTHO05D008682 3.2e-09 64.7 48 60.4
Hund08932 Selenicereus undatus HOM05D006909 ORTHO05D008682 3.2e-09 64.7 48 62.5
ATR0626G002 Amborella trichopoda HOM05D006909 ORTHO05D008682 4.2e-09 64.3 47 61.7
Lj5g0027238 Lotus japonicus HOM05D006909 ORTHO05D008682 4.2e-09 64.3 48 64.6
Nitab4.5_0004792g0040 Nicotiana tabacum HOM05D006909 ORTHO05D008682 4.2e-09 64.3 45 64.4
Psat6g031680 Pisum sativum HOM05D006909 ORTHO05D008682 4.2e-09 64.3 48 60.4
ClCG08G012800 Citrullus lanatus HOM05D006909 ORTHO05D008682 7.2e-09 63.5 45 64.4
MELO3C011204.2 Cucumis melo HOM05D006909 ORTHO05D008682 7.2e-09 63.5 45 64.4
CsaV3_2G031550 Cucumis sativus L. HOM05D006909 ORTHO05D008682 7.2e-09 63.5 45 64.4
Glyma.11G174701 Glycine max HOM05D006909 ORTHO05D008682 1.2e-08 62.8 45 64.4
Glyma.17G200700 Glycine max HOM05D006909 ORTHO05D008682 1.2e-08 62.8 45 64.4
Nn8g41256 Nelumbo nucifera HOM05D006909 ORTHO05D008682 1.2e-08 62.8 48 62.5
Sed0010876 Sechium edule HOM05D006909 ORTHO05D008682 1.2e-08 62.8 45 64.4
Atru.chr7.2714 Acer truncatum HOM05D006909 ORTHO05D008682 2.1e-08 62.0 48 56.2
CANSAT25G3210 Cannabis sativa HOM05D006909 ORTHO05D008682 2.1e-08 62.0 49 61.2
AUR62020694 Chenopodium quinoa HOM05D006909 ORTHO05D008682 2.1e-08 62.0 45 60.0
AUR62028031 Chenopodium quinoa HOM05D006909 ORTHO05D008682 2.1e-08 62.0 45 60.0
RcHm_v2.0_Chr4g0410411 Rosa chinensis HOM05D006909 ORTHO05D008682 2.1e-08 62.0 48 62.5
SalBow8G2968 Salvia bowleyana HOM05D006909 ORTHO05D008682 2.1e-08 62.0 45 62.2
PGSC0003DMG402029598 Solanum tuberosum HOM05D006909 ORTHO05D008682 2.1e-08 62.0 45 62.2
arahy.Tifrunner.gnm1.ann1.032VCH Arachis hypogaea HOM05D006909 ORTHO05D008682 2.7e-08 61.6 45 64.4
arahy.Tifrunner.gnm1.ann1.4H3NCC Arachis hypogaea HOM05D006909 ORTHO05D008682 2.7e-08 61.6 45 64.4
Potri.005G179800 Populus trichocarpa HOM05D006909 ORTHO05D008682 3.6e-08 61.2 45 64.4
Glyma.14G132000 Glycine max HOM05D006909 ORTHO05D008682 4.7e-08 60.8 45 62.2
Sed0021174 Sechium edule HOM05D006909 ORTHO05D008682 4.7e-08 60.8 45 62.2
SalBow4G1645 Salvia bowleyana HOM05D006909 ORTHO05D008682 1.0e-07 59.7 45 62.2
Medtr1g010080 Medicago truncatula HOM05D006909 ORTHO05D008682 1.8e-07 58.9 48 58.3
SGA_v2.0_scaffold27G11701 Striga asiatica HOM05D006909 ORTHO05D008682 1.8e-07 58.9 48 58.3
Lalb_Chr24g0402391 Lupinus albus HOM05D006909 ORTHO05D008682 4.0e-07 57.8 50 58.0
FvH4_4g12330 Fragaria vesca HOM05D006909 ORTHO05D008682 6.7e-07 57.0 48 54.2
FAN12G0257 Fragaria x ananassa HOM05D006909 ORTHO05D008682 6.7e-07 57.0 48 54.2
FAN12G1566 Fragaria x ananassa HOM05D006909 ORTHO05D008682 6.7e-07 57.0 48 54.2
Phvul.001G088800 Phaseolus vulgaris HOM05D006909 ORTHO05D008682 1.2e-06 56.2 45 57.8
VMungo1383G0586 Vigna mungo HOM05D006909 ORTHO05D008682 1.2e-06 56.2 45 57.8
Ciclev10009318m.g Citrus clementina HOM05D006909 ORTHO05D008682 1.5e-06 55.8 48 54.2
Aqoxy7G02568 Aquilegia oxysepala HOM05D006909 ORTHO05D008682 2.0e-06 55.5 48 58.3
Eucgr.C03977 Eucalyptus grandis HOM05D006909 ORTHO05D008682 4.4e-06 54.3 45 53.3
Gohir.A05G066300 Gossypium hirsutum HOM05D006909 ORTHO05D008682 5.7e-06 53.9 35 68.6
Aa31LG2G19230 Aethionema arabicum HOM05D006909 ORTHO05D008682 9.7e-06 53.1 47 48.9
AT4G31115 Arabidopsis thaliana HOM05D006909 ORTHO05D008682 9.7e-06 53.1 47 51.1
CARHR239020 Cardamine hirsuta HOM05D006909 ORTHO05D008682 9.7e-06 53.1 47 51.1
Sp7g28990 Schrenkiella parvula HOM05D006909 ORTHO05D008682 9.7e-06 53.1 44 52.3


User provided reference genes

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