Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia03306 Actinidia chinensis HOM05D007012 ORTHO05D008882 3.0e-79 298.5 157 100.0
vmacro03442 Vaccinium macrocarpon HOM05D007012 ORTHO05D008882 1.1e-52 210.3 124 86.3
CSS0014344 Camellia sinensis var. sinensis HOM05D007012 ORTHO05D008882 4.5e-51 204.9 124 83.9
Cc09_g08050 Coffea canephora HOM05D007012 ORTHO05D008882 8.5e-50 200.7 124 79.0
Hma1.2p1_0333F.1_g128270 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 8.5e-50 200.7 124 81.5
QL05p061226 Quercus lobata HOM05D007012 ORTHO05D008882 2.5e-49 199.1 124 80.6
Dinv35474 Davidia involucrata HOM05D007012 ORTHO05D008882 4.2e-49 198.4 124 81.5
Gohir.D06G213600 Gossypium hirsutum HOM05D007012 ORTHO05D008882 5.5e-49 198.0 126 81.0
Gorai.010G252500 Gossypium raimondii HOM05D007012 ORTHO05D008882 5.5e-49 198.0 126 81.0
Rhsim05G0222100 Rhododendron simsii HOM05D007012 ORTHO05D008882 1.2e-48 196.8 124 80.6
Thecc.06G001300 Theobroma cacao HOM05D007012 ORTHO05D008882 1.2e-48 196.8 124 79.0
Nitab4.5_0001225g0050 Nicotiana tabacum HOM05D007012 ORTHO05D008882 2.1e-48 196.1 124 78.2
Nitab4.5_0004615g0020 Nicotiana tabacum HOM05D007012 ORTHO05D008882 4.6e-48 194.9 124 77.4
Peaxi162Scf00100g01517 Petunia axillaris HOM05D007012 ORTHO05D008882 4.6e-48 194.9 124 76.6
Solyc02g069820.3 Solanum lycopersicum HOM05D007012 ORTHO05D008882 6.1e-48 194.5 124 78.2
Gohir.A06G207700 Gossypium hirsutum HOM05D007012 ORTHO05D008882 1.0e-47 193.7 126 79.4
PGSC0003DMG400021126 Solanum tuberosum HOM05D007012 ORTHO05D008882 2.3e-47 192.6 124 77.4
Sopen02g018980 Solanum pennellii HOM05D007012 ORTHO05D008882 3.0e-47 192.2 124 77.4
Manes.14G122800 Manihot esculenta HOM05D007012 ORTHO05D008882 1.1e-46 190.3 123 77.2
CiPaw.09G115600 Carya illinoinensis HOM05D007012 ORTHO05D008882 1.5e-46 189.9 124 79.0
Lsat_1_v5_gn_1_117760 Lactuca sativa HOM05D007012 ORTHO05D008882 1.5e-46 189.9 124 76.6
Atru.chr10.869 Acer truncatum HOM05D007012 ORTHO05D008882 2.6e-46 189.1 120 80.0
TWI73G0699 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 2.6e-46 189.1 124 77.4
TAR629G2694 Trochodendron aralioides HOM05D007012 ORTHO05D008882 2.6e-46 189.1 124 78.2
GSVIVG01021626001 Vitis vinifera HOM05D007012 ORTHO05D008882 4.4e-46 188.3 124 76.6
CAN.G1520.3 Capsicum annuum HOM05D007012 ORTHO05D008882 7.4e-46 187.6 119 79.0
Ciclev10017190m.g Citrus clementina HOM05D007012 ORTHO05D008882 1.3e-45 186.8 124 75.8
Sed0027179 Sechium edule HOM05D007012 ORTHO05D008882 4.8e-45 184.9 123 74.0
CiPaw.10G085800 Carya illinoinensis HOM05D007012 ORTHO05D008882 1.8e-44 183.0 124 76.6
TWI09G0010 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 1.8e-44 183.0 124 76.6
MD10G1253600 Malus domestica HOM05D007012 ORTHO05D008882 2.4e-44 182.6 122 75.4
MELO3C023274.2 Cucumis melo HOM05D007012 ORTHO05D008882 3.1e-44 182.2 123 73.2
HanXRQChr15g0468791 Helianthus annuus HOM05D007012 ORTHO05D008882 4.1e-44 181.8 120 75.8
QL05p061674 Quercus lobata HOM05D007012 ORTHO05D008882 5.3e-44 181.4 156 63.5
ClCG02G000770 Citrullus lanatus HOM05D007012 ORTHO05D008882 6.9e-44 181.0 123 72.4
AL5G19030 Arabidopsis lyrata HOM05D007012 ORTHO05D008882 2.0e-43 179.5 119 73.9
Thhalv10005148m.g Eutrema salsugineum HOM05D007012 ORTHO05D008882 2.0e-43 179.5 119 73.9
Sp2g17760 Schrenkiella parvula HOM05D007012 ORTHO05D008882 2.0e-43 179.5 119 73.1
Carub.0005s0786 Capsella rubella HOM05D007012 ORTHO05D008882 2.6e-43 179.1 119 72.3
RcHm_v2.0_Chr5g0015911 Rosa chinensis HOM05D007012 ORTHO05D008882 2.6e-43 179.1 122 74.6
PGR031G1292 Punica granatum HOM05D007012 ORTHO05D008882 3.4e-43 178.7 123 73.2
Prupe.4G090000 Prunus persica HOM05D007012 ORTHO05D008882 5.9e-43 177.9 124 71.8
MSTRG.7536 Avicennia marina HOM05D007012 ORTHO05D008882 1.0e-42 177.2 124 71.8
BcaC06g30880 Brassica carinata HOM05D007012 ORTHO05D008882 1.7e-42 176.4 119 71.4
BcaC06g33671 Brassica carinata HOM05D007012 ORTHO05D008882 2.2e-42 176.0 119 71.4
C07p38010 Brassica napus HOM05D007012 ORTHO05D008882 2.2e-42 176.0 119 71.4
BolC7t44322H Brassica oleracea HOM05D007012 ORTHO05D008882 2.2e-42 176.0 119 71.4
FvH4_3g10060 Fragaria vesca HOM05D007012 ORTHO05D008882 6.5e-42 174.5 121 72.7
FAN25G0029 Fragaria x ananassa HOM05D007012 ORTHO05D008882 6.5e-42 174.5 121 72.7
HPP92_000966 Vanilla planifolia HOM05D007012 ORTHO05D008882 8.5e-42 174.1 122 68.9
Aa31LG2G4090 Aethionema arabicum HOM05D007012 ORTHO05D008882 1.4e-41 173.3 119 69.7
THA.LOC104805486 Tarenaya hassleriana HOM05D007012 ORTHO05D008882 1.4e-41 173.3 122 69.7
Eucgr.K01942 Eucalyptus grandis HOM05D007012 ORTHO05D008882 1.9e-41 172.9 124 71.0
Migut.M01890 Erythranthe guttata HOM05D007012 ORTHO05D008882 2.5e-41 172.6 119 70.6
Migut.M01889 Erythranthe guttata HOM05D007012 ORTHO05D008882 3.2e-41 172.2 125 68.8
SGA_v2.0_scaffold1G00245 Striga asiatica HOM05D007012 ORTHO05D008882 3.2e-41 172.2 124 69.4
A06p40130 Brassica napus HOM05D007012 ORTHO05D008882 4.2e-41 171.8 119 69.7
Migut.M00621 Erythranthe guttata HOM05D007012 ORTHO05D008882 5.5e-41 171.4 119 69.7
FAN21G1693 Fragaria x ananassa HOM05D007012 ORTHO05D008882 5.5e-41 171.4 121 71.1
CARHR152280 Cardamine hirsuta HOM05D007012 ORTHO05D008882 7.2e-41 171.0 119 70.6
Potri.011G098200 Populus trichocarpa HOM05D007012 ORTHO05D008882 7.2e-41 171.0 118 73.7
unitig_748.g7806 Utricularia gibba HOM05D007012 ORTHO05D008882 7.2e-41 171.0 119 70.6
CANSAT11G0200 Cannabis sativa HOM05D007012 ORTHO05D008882 9.4e-41 170.6 123 69.1
ECA248G1541 Erigeron canadensis HOM05D007012 ORTHO05D008882 9.4e-41 170.6 121 70.2
MD05G1273800 Malus domestica HOM05D007012 ORTHO05D008882 1.6e-40 169.9 122 69.7
Glyma.05G166500 Glycine max HOM05D007012 ORTHO05D008882 2.1e-40 169.5 122 64.8
arahy.Tifrunner.gnm1.ann1.80D497 Arachis hypogaea HOM05D007012 ORTHO05D008882 2.7e-40 169.1 125 64.8
PSO675G5463 Papaver somniferum HOM05D007012 ORTHO05D008882 6.1e-40 167.9 123 69.1
Sabra11G0090900 Salix brachista HOM05D007012 ORTHO05D008882 7.9e-40 167.5 118 73.7
arahy.Tifrunner.gnm1.ann1.HAVC5G Arachis hypogaea HOM05D007012 ORTHO05D008882 1.0e-39 167.2 123 64.2
Sc24g0001360 Simmondsia chinensis HOM05D007012 ORTHO05D008882 1.0e-39 167.2 122 68.9
PSO541G1654 Papaver somniferum HOM05D007012 ORTHO05D008882 1.4e-39 166.8 123 67.5
Sabra11G0084700 Salix brachista HOM05D007012 ORTHO05D008882 2.3e-39 166.0 118 72.9
AUR62005835 Chenopodium quinoa HOM05D007012 ORTHO05D008882 3.9e-39 165.2 122 66.4
AUR62032828 Chenopodium quinoa HOM05D007012 ORTHO05D008882 3.9e-39 165.2 122 66.4
Lalb_Chr12g0204651 Lupinus albus HOM05D007012 ORTHO05D008882 3.9e-39 165.2 123 64.2
SalBow8G4607 Salvia bowleyana HOM05D007012 ORTHO05D008882 6.7e-39 164.5 140 60.0
Ah.02g129420 Amaranthus hybridus HOM05D007012 ORTHO05D008882 4.4e-38 161.8 122 65.6
Phvul.002G246900 Phaseolus vulgaris HOM05D007012 ORTHO05D008882 5.7e-38 161.4 123 63.4
Medtr8g088380 Medicago truncatula HOM05D007012 ORTHO05D008882 9.7e-38 160.6 122 60.7
Psat7g066160 Pisum sativum HOM05D007012 ORTHO05D008882 2.8e-37 159.1 124 58.9
Lj4g0006275 Lotus japonicus HOM05D007012 ORTHO05D008882 3.7e-37 158.7 117 64.1
Hund20768 Selenicereus undatus HOM05D007012 ORTHO05D008882 8.2e-37 157.5 122 67.2
TPR.G6804 Trifolium pratense HOM05D007012 ORTHO05D008882 3.1e-36 155.6 123 57.7
EL10Ac6g13254 Beta vulgaris HOM05D007012 ORTHO05D008882 4.1e-36 155.2 120 65.0
CDE08G0050 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 1.3e-34 150.2 102 69.6
Cfa000822 Carpinus fangiana HOM05D007012 ORTHO05D008882 8.5e-34 147.5 90 83.3
Migut.M00618 Erythranthe guttata HOM05D007012 ORTHO05D008882 5.5e-33 144.8 108 66.7
BraA06t26928Z Brassica rapa HOM05D007012 ORTHO05D008882 9.4e-33 144.1 174 47.1
Os03g0640400 Oryza sativa ssp. japonica HOM05D007012 ORTHO05D008882 1.2e-32 143.7 122 57.4
Hma1.2p1_0333F.1_g128260 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 1.6e-32 143.3 89 82.0
Zm00001eb218740 Zea mays HOM05D007012 ORTHO05D008882 2.1e-32 142.9 121 56.2
SEGI_30962 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 2.7e-32 142.5 113 61.9
Sed0002894 Sechium edule HOM05D007012 ORTHO05D008882 4.7e-32 141.7 101 67.3
Haze_05817 Corylus avellana HOM05D007012 ORTHO05D008882 4.0e-31 138.7 94 76.6
CDE08G0396 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 9.7e-30 134.0 100 65.0
CsaV3_2G017990 Cucumis sativus L. HOM05D007012 ORTHO05D008882 2.8e-29 132.5 89 73.0
AT3G29130 Arabidopsis thaliana HOM05D007012 ORTHO05D008882 1.4e-28 130.2 87 71.3
Oeu034103.1 Olea europaea HOM05D007012 ORTHO05D008882 3.1e-28 129.0 90 70.0
FAN11G2674 Fragaria x ananassa HOM05D007012 ORTHO05D008882 4.1e-28 128.6 89 74.2
FAN16G3160 Fragaria x ananassa HOM05D007012 ORTHO05D008882 5.3e-28 128.3 89 74.2
Aqoxy1G01570 Aquilegia oxysepala HOM05D007012 ORTHO05D008882 1.0e-26 124.0 91 70.3
Pp3c17_18250 Physcomitrium patens HOM05D007012 ORTHO05D008882 1.0e-26 124.0 126 52.4
VMungo0251G0322 Vigna mungo HOM05D007012 ORTHO05D008882 2.9e-26 122.5 89 62.9
Mapoly0001s0437 Marchantia polymorpha HOM05D007012 ORTHO05D008882 7.2e-25 117.9 119 47.1
ATR0165G051 Amborella trichopoda HOM05D007012 ORTHO05D008882 1.6e-24 116.7 89 62.9
SEGI_05812 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 2.3e-23 112.8 81 66.7
AagrBONN_evm.TU.Sc2ySwM_368.2441 Anthoceros agrestis HOM05D007012 ORTHO05D008882 8.8e-23 110.9 121 46.3
Migut.M00617 Erythranthe guttata HOM05D007012 ORTHO05D008882 8.8e-23 110.9 116 50.9
CBR_g52649 Chara braunii HOM05D007012 ORTHO05D008882 3.7e-21 105.5 124 44.4
AagrBONN_evm.TU.Sc2ySwM_117.2140 Anthoceros agrestis HOM05D007012 ORTHO05D008882 5.0e-18 95.1 85 54.1
Glyma.08G124500 Glycine max HOM05D007012 ORTHO05D008882 6.8e-15 84.7 54 70.4
Nn3g20226 Nelumbo nucifera HOM05D007012 ORTHO05D008882 4.1e-12 75.5 120 41.7


User provided reference genes

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