Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia03250 Actinidia chinensis HOM05D008657 ORTHO05D010869 3.5e-180 636.0 392 100.0
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.4e-109 399.4 376 65.2
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 3.3e-106 390.2 389 63.2
Lj3C333T3 Lonicera japonica HOM05D008657 ORTHO05D010869 1.1e-80 305.4 334 68.0
TAR376G1027 Trochodendron aralioides HOM05D008657 ORTHO05D010869 9.1e-72 275.8 381 59.3
Prupe.2G051600 Prunus persica HOM05D008657 ORTHO05D010869 1.2e-68 265.4 343 61.5
RcHm_v2.0_Chr1g0330001 Rosa chinensis HOM05D008657 ORTHO05D010869 5.2e-67 260.0 323 59.4
Cpa.g.sc33.145 Carica papaya HOM05D008657 ORTHO05D010869 2.2e-65 254.6 376 55.6
CANSAT56G3352 Cannabis sativa HOM05D008657 ORTHO05D010869 1.6e-63 248.4 344 59.0
COL.COLO4_28899 Corchorus olitorius HOM05D008657 ORTHO05D010869 6.5e-62 243.0 320 61.9
PGR031G0953 Punica granatum HOM05D008657 ORTHO05D010869 3.7e-57 227.3 365 52.9
Carub.0003s3351 Capsella rubella HOM05D008657 ORTHO05D010869 1.0e-54 219.2 340 51.2
CsaV3_5G029290 Cucumis sativus L. HOM05D008657 ORTHO05D010869 1.1e-53 215.7 340 46.8
ClCG07G005030 Citrullus lanatus HOM05D008657 ORTHO05D010869 1.9e-53 214.9 329 45.6
Sed0024339 Sechium edule HOM05D008657 ORTHO05D010869 3.2e-53 214.2 325 39.1
AT2G19280 Arabidopsis thaliana HOM05D008657 ORTHO05D010869 5.5e-53 213.4 345 49.6
BcaB03g16718 Brassica carinata HOM05D008657 ORTHO05D010869 5.5e-53 213.4 344 36.0
Sc08g0000170 Simmondsia chinensis HOM05D008657 ORTHO05D010869 5.5e-53 213.4 382 39.3
C07p02910 Brassica napus HOM05D008657 ORTHO05D010869 6.1e-52 209.9 341 42.8
FAN10G0285 Fragaria x ananassa HOM05D008657 ORTHO05D010869 8.0e-52 209.5 322 56.5
BcaC06g36560 Brassica carinata HOM05D008657 ORTHO05D010869 1.0e-51 209.1 341 42.8
A07p01450 Brassica napus HOM05D008657 ORTHO05D010869 1.0e-51 209.1 343 43.1
BolC7t40688H Brassica oleracea HOM05D008657 ORTHO05D010869 1.4e-51 208.8 341 42.5
Sp3g32660 Schrenkiella parvula HOM05D008657 ORTHO05D010869 3.0e-51 207.6 341 51.6
Aa31LG8G16330 Aethionema arabicum HOM05D008657 ORTHO05D010869 5.2e-51 206.8 347 49.6
BraA07t27942Z Brassica rapa HOM05D008657 ORTHO05D010869 6.8e-51 206.5 343 42.9
Hund22231 Selenicereus undatus HOM05D008657 ORTHO05D010869 4.4e-50 203.8 377 46.9
Thhalv10023028m.g Eutrema salsugineum HOM05D008657 ORTHO05D010869 2.2e-49 201.4 310 38.4
CARHR109740 Cardamine hirsuta HOM05D008657 ORTHO05D010869 5.4e-48 196.8 340 49.7
MELO3C011779.2 Cucumis melo HOM05D008657 ORTHO05D010869 2.2e-46 191.4 329 43.2
Gohir.A06G171100 Gossypium hirsutum HOM05D008657 ORTHO05D010869 2.5e-45 188.0 337 50.1
Gorai.010G208900 Gossypium raimondii HOM05D008657 ORTHO05D010869 2.5e-45 188.0 337 49.9
AL3G49010 Arabidopsis lyrata HOM05D008657 ORTHO05D010869 5.7e-42 176.8 340 46.8
Lj3A303T33 Lonicera japonica HOM05D008657 ORTHO05D010869 2.3e-38 164.9 209 46.9
Oeu052822.1 Olea europaea HOM05D008657 ORTHO05D010869 2.3e-38 164.9 238 68.9
DCAR_018350 Daucus carota HOM05D008657 ORTHO05D010869 8.6e-38 162.9 341 48.7
FAN06G4111 Fragaria x ananassa HOM05D008657 ORTHO05D010869 3.6e-36 157.5 159 49.1
FvH4_7g04580 Fragaria vesca HOM05D008657 ORTHO05D010869 8.0e-36 156.4 159 49.1
Thecc.10G128900 Theobroma cacao HOM05D008657 ORTHO05D010869 1.4e-35 155.6 343 48.4
FAN03G0499 Fragaria x ananassa HOM05D008657 ORTHO05D010869 8.6e-30 136.3 142 46.5
FAN01G0963 Fragaria x ananassa HOM05D008657 ORTHO05D010869 1.9e-24 118.6 153 41.8
Eucgr.G03180 Eucalyptus grandis HOM05D008657 ORTHO05D010869 1.3e-22 112.5 124 51.6
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 7.8e-15 86.7 217 30.0
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 4.7e-12 77.4 214 29.9
SEGI_32122 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 8.1e-12 76.6 238 25.2
TWI74G1032 Tripterygium wilfordii HOM05D007291 ORTHO05D009038 1.1e-11 76.3 200 27.0
Lj2g0016301 Lotus japonicus HOM05D007291 ORTHO05D009038 1.2e-10 72.8 205 29.3
Lj3C325T0 Lonicera japonica HOM05D008657 ORTHO05D010869 1.5e-10 72.4 63 55.6
Potri.004G090800 Populus trichocarpa HOM05D007291 ORTHO05D009038 4.4e-10 70.9 203 28.1
arahy.Tifrunner.gnm1.ann1.HW3SC4 Arachis hypogaea HOM05D007291 ORTHO05D009038 7.6e-10 70.1 209 26.8
Cfa021290 Carpinus fangiana HOM05D007496 ORTHO05D009479 7.6e-10 70.1 146 30.1
Lsat_1_v5_gn_9_22380 Lactuca sativa HOM05D007212 ORTHO05D009094 1.3e-09 69.3 215 24.2
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 1.7e-09 68.9 229 25.3
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 2.2e-09 68.6 159 29.6
Potri.010G098400 Populus trichocarpa HOM05D007496 ORTHO05D009479 2.2e-09 68.6 146 30.1
Sabra04G0061000 Salix brachista HOM05D007291 ORTHO05D009038 2.2e-09 68.6 220 24.1
SEGI_06868 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 2.2e-09 68.6 239 25.5
Haze_01569 Corylus avellana HOM05D007496 ORTHO05D009479 2.9e-09 68.2 146 29.5
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.9e-09 68.2 226 23.5
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.9e-09 68.2 226 23.9
ClCG01G008820 Citrullus lanatus HOM05D007291 ORTHO05D009038 3.8e-09 67.8 200 23.5
Prupe.1G342600 Prunus persica HOM05D007496 ORTHO05D009479 3.8e-09 67.8 143 30.1
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.8e-09 67.8 218 24.8
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 3.8e-09 67.8 153 29.4
Dinv28147 Davidia involucrata HOM05D007496 ORTHO05D009479 8.4e-09 66.6 156 30.1
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 1.1e-08 66.2 168 29.2
Oeu030299.1 Olea europaea HOM05D007545 ORTHO05D009579 1.4e-08 65.9 160 26.2
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.4e-08 65.9 224 23.2
Gohir.D06G179000 Gossypium hirsutum HOM05D008657 ORTHO05D010869 2.4e-08 65.1 199 53.3
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 2.4e-08 65.1 206 25.7
Ca_18211_v3 Cicer arietinum L. HOM05D007496 ORTHO05D009479 3.2e-08 64.7 145 30.3
MBI04_g29831_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D009038 3.2e-08 64.7 199 25.1
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 3.2e-08 64.7 226 22.6
Hma1.2p1_1840F.1_g304950 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 4.1e-08 64.3 206 25.2
QL03p041883 Quercus lobata HOM05D007496 ORTHO05D009479 4.1e-08 64.3 146 30.1
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 5.4e-08 63.9 169 25.4
Lalb_Chr13g0293071 Lupinus albus HOM05D007496 ORTHO05D009479 5.4e-08 63.9 146 28.8
MD13G1010200 Malus domestica HOM05D007496 ORTHO05D009479 5.4e-08 63.9 143 28.0
Psat0s1866g0040 Pisum sativum HOM05D007496 ORTHO05D009479 5.4e-08 63.9 157 29.9
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 5.4e-08 63.9 170 26.5
Sed0024711 Sechium edule HOM05D007291 ORTHO05D009038 7.1e-08 63.5 181 24.3
Aqoxy5G03884 Aquilegia oxysepala HOM05D007496 ORTHO05D009479 9.2e-08 63.2 150 28.0
Phvul.003G017200 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 9.2e-08 63.2 226 23.0
TPR.G34766 Trifolium pratense HOM05D007496 ORTHO05D009479 9.2e-08 63.2 139 28.8
Migut.L00784 Erythranthe guttata HOM05D007496 ORTHO05D009479 1.2e-07 62.8 199 27.1
SEGI_11241 Sequoiadendron giganteum HOM05D007496 ORTHO05D009479 1.2e-07 62.8 171 28.1
CSS0010405 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 1.6e-07 62.4 144 34.0
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 1.6e-07 62.4 228 25.4
Sabra10G0070900 Salix brachista HOM05D007496 ORTHO05D009479 1.6e-07 62.4 146 26.7
Manes.16G125800 Manihot esculenta HOM05D007291 ORTHO05D009038 2.1e-07 62.0 187 24.1
Sabra17G0060800 Salix brachista HOM05D007358 ORTHO05D009117 2.1e-07 62.0 140 29.3
Thecc.06G215000 Theobroma cacao HOM05D007956 ORTHO05D010152 2.1e-07 62.0 167 26.9
TAR636G1662 Trochodendron aralioides HOM05D007496 ORTHO05D009479 2.1e-07 62.0 151 31.1
MELO3C033967.2 Cucumis melo HOM05D007496 ORTHO05D009479 2.7e-07 61.6 159 25.8
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 2.7e-07 61.6 204 24.0
Nn1g01012 Nelumbo nucifera HOM05D007496 ORTHO05D009479 2.7e-07 61.6 151 28.5
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 2.7e-07 61.6 193 25.4
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 2.7e-07 61.6 182 28.0
SEGI_00853 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.7e-07 61.6 170 27.6
CiPaw.05G161700 Carya illinoinensis HOM05D007496 ORTHO05D009479 3.5e-07 61.2 157 29.3
EL10Ac6g15406 Beta vulgaris HOM05D007496 ORTHO05D009479 4.6e-07 60.8 154 29.2
QL11p054679 Quercus lobata HOM05D007551 ORTHO05D009424 4.6e-07 60.8 226 25.2
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 4.6e-07 60.8 203 24.1
ATR0829G190 Amborella trichopoda HOM05D007291 ORTHO05D009038 6.0e-07 60.5 194 24.7
Cpa.g.sc116.47 Carica papaya HOM05D007291 ORTHO05D009038 6.0e-07 60.5 187 26.7
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 6.0e-07 60.5 235 23.0
RcHm_v2.0_Chr4g0446071 Rosa chinensis HOM05D007496 ORTHO05D009479 6.0e-07 60.5 143 28.0
Actinidia38410 Actinidia chinensis HOM05D007496 ORTHO05D009479 7.8e-07 60.1 159 27.7
CsaV3_5G017450 Cucumis sativus L. HOM05D007496 ORTHO05D009479 7.8e-07 60.1 146 24.0
QL02p057926 Quercus lobata HOM05D007291 ORTHO05D009038 7.8e-07 60.1 178 26.4
QL93p0100_0337 Quercus lobata HOM05D007291 ORTHO05D009038 7.8e-07 60.1 178 26.4
VMungo0464G1987 Vigna mungo HOM05D007358 ORTHO05D009117 7.8e-07 60.1 229 24.0
Atru.chr11.1049 Acer truncatum HOM05D007496 ORTHO05D009479 1.0e-06 59.7 158 25.9
MSTRG.10708 Avicennia marina HOM05D007291 ORTHO05D009038 1.3e-06 59.3 218 24.3
CiPaw.01G118600 Carya illinoinensis HOM05D007291 ORTHO05D009038 1.3e-06 59.3 166 25.9
AUR62017779 Chenopodium quinoa HOM05D007496 ORTHO05D009479 1.3e-06 59.3 183 23.5
Migut.F01873 Erythranthe guttata HOM05D007358 ORTHO05D009117 1.3e-06 59.3 216 23.1
FAN07G1579 Fragaria x ananassa HOM05D007496 ORTHO05D009479 1.3e-06 59.3 156 27.6
ClCG01G007050 Citrullus lanatus HOM05D007496 ORTHO05D009479 1.7e-06 58.9 146 26.0
FAN17G2862 Fragaria x ananassa HOM05D007496 ORTHO05D009479 1.7e-06 58.9 142 26.8
Glyma.05G004200 Glycine max HOM05D007358 ORTHO05D009117 1.7e-06 58.9 228 23.2
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 2.3e-06 58.5 227 25.1
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 2.3e-06 58.5 176 23.9
Prupe.4G237400 Prunus persica HOM05D007291 ORTHO05D009038 2.3e-06 58.5 215 24.7
ATR0317G062 Amborella trichopoda HOM05D007496 ORTHO05D009479 3.0e-06 58.2 173 24.9
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 3.0e-06 58.2 234 23.1
COL.COLO4_27514 Corchorus olitorius HOM05D007496 ORTHO05D009479 3.0e-06 58.2 134 29.1
FvH4_4g36310 Fragaria vesca HOM05D007496 ORTHO05D009479 3.0e-06 58.2 142 26.8
HanXRQChr08g0215011 Helianthus annuus HOM05D007623 ORTHO05D009641 3.0e-06 58.2 214 28.5
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 3.0e-06 58.2 229 25.3
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 3.9e-06 57.8 190 26.3
Aa31LG2G7790 Aethionema arabicum HOM05D007496 ORTHO05D009479 5.1e-06 57.4 194 25.8
Dinv28212 Davidia involucrata HOM05D007291 ORTHO05D009038 5.1e-06 57.4 175 23.4
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 5.1e-06 57.4 164 23.8
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 5.1e-06 57.4 186 25.8
Sc07g0008330 Simmondsia chinensis HOM05D007551 ORTHO05D009424 5.1e-06 57.4 229 22.7
Lsat_1_v5_gn_2_69440 Lactuca sativa HOM05D007291 ORTHO05D009038 6.6e-06 57.0 210 24.3
Thecc.02G296100 Theobroma cacao HOM05D007496 ORTHO05D009479 6.6e-06 57.0 122 29.5
Ca_00776_v3 Cicer arietinum L. HOM05D000091 ORTHO05D009038 8.6e-06 56.6 229 23.1
Cc09_g03920 Coffea canephora HOM05D007358 ORTHO05D009117 8.6e-06 56.6 158 27.2
Manes.16G011600 Manihot esculenta HOM05D007956 ORTHO05D010152 8.6e-06 56.6 179 23.5


User provided reference genes

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