Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.2e-172 609.8 318 100.0
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 8.3e-153 543.9 319 90.3
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.5e-143 511.5 319 85.0
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 5.6e-141 504.6 301 86.4
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 5.6e-141 504.6 301 86.4
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 2.7e-135 485.7 299 84.6
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.7e-134 483.0 308 80.5
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 3.9e-134 481.9 304 84.5
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.9e-133 479.6 319 78.1
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 4.3e-133 478.4 320 79.4
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 9.5e-133 477.2 319 78.4
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 1.4e-131 473.4 319 76.2
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.8e-131 473.0 318 77.0
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 2.3e-131 472.6 301 78.4
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 2.3e-131 472.6 319 76.8
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 4.0e-131 471.9 319 76.2
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 6.8e-131 471.1 319 79.0
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 1.2e-130 470.3 304 79.3
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 2.6e-130 469.2 302 79.8
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.4e-130 468.8 319 74.9
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 3.4e-130 468.8 298 77.9
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 4.4e-130 468.4 301 81.4
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.8e-130 468.0 290 79.3
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.8e-130 468.0 290 79.7
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 9.8e-130 467.2 290 79.3
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.3e-129 466.8 300 79.7
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 1.7e-129 466.5 300 78.3
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.2e-129 466.1 319 74.6
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.9e-129 465.7 301 77.7
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 2.9e-129 465.7 302 79.1
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.7e-129 465.3 301 79.1
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 6.4e-129 464.5 319 75.5
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 8.3e-129 464.2 296 78.7
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 1.9e-128 463.0 319 74.3
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 1.9e-128 463.0 301 78.1
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 2.4e-128 462.6 300 77.7
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 4.1e-128 461.8 297 78.8
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 4.6e-127 458.4 300 76.7
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.0e-126 457.2 305 78.0
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.7e-126 456.4 301 75.7
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.7e-126 456.4 301 75.7
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.7e-126 456.4 302 78.5
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 2.3e-126 456.1 319 72.7
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 2.3e-126 456.1 318 74.8
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.3e-126 456.1 305 78.4
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 8.6e-126 454.1 301 75.1
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 1.1e-125 453.8 318 76.1
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.5e-125 453.4 304 77.3
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.9e-125 453.0 318 75.8
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 2.5e-125 452.6 302 76.2
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 7.3e-125 451.1 302 77.2
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.1e-124 449.5 301 74.4
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 4.7e-124 448.4 302 77.2
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 8.1e-124 447.6 305 76.7
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 1.4e-123 446.8 304 76.6
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 1.4e-123 446.8 322 73.3
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.1e-123 445.7 300 77.0
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 4.0e-123 445.3 336 71.4
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 5.2e-123 444.9 304 76.0
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 5.2e-123 444.9 304 75.7
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 5.2e-123 444.9 301 73.1
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 8.9e-123 444.1 307 74.9
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 2.0e-122 443.0 301 74.4
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 4.4e-122 441.8 303 75.2
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 7.5e-122 441.0 302 74.5
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.3e-121 440.3 305 73.4
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 2.2e-121 439.5 338 69.8
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 2.2e-121 439.5 318 73.6
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 3.7e-121 438.7 318 73.9
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 6.4e-121 438.0 297 76.8
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.9e-120 436.4 318 72.6
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.4e-120 436.0 259 86.9
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 3.2e-120 435.6 298 77.2
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 3.2e-120 435.6 301 71.8
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 4.1e-120 435.3 317 73.2
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 9.2e-120 434.1 305 74.8
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.2e-119 433.7 305 73.1
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 4.6e-119 431.8 267 78.7
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 4.6e-119 431.8 314 72.9
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 2.3e-118 429.5 297 74.7
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 5.1e-118 428.3 300 72.7
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 5.1e-118 428.3 301 72.1
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 8.6e-118 427.6 331 70.1
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 1.5e-117 426.8 301 72.4
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.5e-117 426.8 295 74.2
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.5e-117 426.8 300 72.0
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 1.5e-117 426.8 319 71.2
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.9e-117 426.4 320 70.3
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 2.5e-117 426.0 295 73.9
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 2.5e-117 426.0 362 63.0
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 2.5e-117 426.0 302 72.5
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 5.6e-117 424.9 298 72.5
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 7.3e-117 424.5 382 60.2
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 9.5e-117 424.1 301 71.8
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.2e-116 423.7 301 72.1
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 1.6e-116 423.3 302 72.8
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 1.6e-116 423.3 302 72.8
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 2.1e-116 422.9 301 71.8
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 2.1e-116 422.9 301 71.4
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.1e-116 422.9 302 71.2
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 2.8e-116 422.5 302 71.2
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 2.8e-116 422.5 319 69.6
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 8.1e-116 421.0 306 70.9
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 1.1e-115 420.6 301 71.8
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.4e-115 420.2 283 73.9
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 1.4e-115 420.2 301 71.1
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 1.8e-115 419.9 266 78.6
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.0e-115 418.7 302 71.5
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 6.8e-115 417.9 319 68.3
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 2.0e-114 416.4 303 71.9
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 2.6e-114 416.0 274 77.7
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 3.4e-114 415.6 298 70.8
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 4.4e-114 415.2 302 71.5
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 9.9e-114 414.1 279 74.2
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.3e-113 413.7 299 70.9
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 8.4e-113 411.0 308 69.5
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 1.2e-111 407.1 316 70.3
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 3.0e-110 402.5 357 62.5
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 4.7e-108 395.2 305 66.9
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 6.2e-108 394.8 257 75.9
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.4e-107 392.9 285 69.1
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 5.8e-106 388.3 300 68.0
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.2e-103 380.6 308 64.3
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 7.8e-103 377.9 305 64.6
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.5e-101 372.9 298 63.4
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 4.5e-98 362.1 239 77.0
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.7e-97 360.1 286 64.0
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 2.2e-97 359.8 299 63.9
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 1.3e-89 334.0 269 61.0
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.5e-85 320.5 297 55.6
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.4e-85 318.2 230 72.2
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 1.4e-83 313.9 276 57.6
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 2.4e-83 313.2 279 54.1
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.5e-82 310.5 280 54.3
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 1.1e-80 304.3 270 61.5
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.2e-79 300.8 285 54.4
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 2.7e-79 299.7 289 51.6
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 6.0e-79 298.5 278 57.9
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 6.0e-79 298.5 289 51.2
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 9.7e-77 291.2 311 52.1
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 9.7e-77 291.2 294 53.1
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 2.2e-73 280.0 299 55.5
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 3.8e-73 279.3 200 69.5
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.7e-68 263.8 238 55.9
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 2.2e-68 263.5 222 60.8
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 7.7e-66 255.0 194 70.6
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.1e-63 246.9 327 49.2
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 7.9e-63 245.0 189 67.7
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 1.7e-60 237.3 213 62.0
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 2.8e-60 236.5 148 77.0
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 7.7e-58 228.4 183 65.6
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 5.0e-57 225.7 223 52.9
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.2e-55 221.1 221 50.7
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 6.7e-54 215.3 149 73.8
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.4e-46 191.0 152 66.4
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 4.1e-43 179.5 292 36.0
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 8.6e-33 145.2 296 32.8
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 3.0e-30 136.7 324 30.6
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 4.9e-28 129.4 108 67.6
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.1e-27 128.3 114 59.6
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 3.6e-23 113.2 126 52.4
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 6.8e-22 109.0 285 29.1
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.2e-21 108.2 76 75.0
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 1.1e-19 101.7 286 27.3
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 2.4e-19 100.5 283 30.0
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.0e-14 83.2 184 38.0
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 1.0e-09 68.6 56 55.4
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 7.3e-08 62.4 39 71.8


User provided reference genes

Program Settings