Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.9e-33 146.4 159 100.0
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 5.2e-23 111.7 153 48.4
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 8.9e-23 110.9 153 47.7
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 1.2e-22 110.5 156 76.3
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.0e-22 109.8 156 90.4
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 4.4e-22 108.6 156 46.2
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 9.9e-22 107.5 152 64.5
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 1.3e-21 107.1 156 46.8
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 1.3e-21 107.1 156 48.7
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 1.7e-21 106.7 156 50.0
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 2.9e-21 105.9 155 51.0
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 4.9e-21 105.1 156 88.5
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 4.9e-21 105.1 156 46.8
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 6.4e-21 104.8 156 44.9
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 6.4e-21 104.8 153 45.8
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 6.4e-21 104.8 153 88.2
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.1e-20 104.0 157 63.7
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 1.1e-20 104.0 156 46.2
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 1.1e-20 104.0 153 45.8
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.4e-20 103.6 153 45.1
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.4e-20 103.6 153 45.1
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 2.4e-20 102.8 156 46.2
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 3.2e-20 102.4 158 46.8
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 5.4e-20 101.7 154 46.1
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 5.4e-20 101.7 154 46.1
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 5.4e-20 101.7 153 45.1
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 5.4e-20 101.7 156 45.5
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 7.1e-20 101.3 156 52.6
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 9.3e-20 100.9 153 45.8
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 9.3e-20 100.9 155 64.5
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 1.2e-19 100.5 153 86.3
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 2.1e-19 99.8 154 43.5
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 2.1e-19 99.8 153 44.4
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 2.7e-19 99.4 154 43.5
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 2.7e-19 99.4 154 43.5
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 2.7e-19 99.4 157 86.6
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 2.7e-19 99.4 153 86.3
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.5e-19 99.0 154 42.9
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 3.5e-19 99.0 154 46.1
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 3.5e-19 99.0 151 72.2
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 4.6e-19 98.6 154 44.2
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 4.6e-19 98.6 154 44.2
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.6e-19 98.6 145 47.6
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 4.6e-19 98.6 155 44.5
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 4.6e-19 98.6 154 42.9
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.0e-18 97.4 150 44.7
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 1.3e-18 97.1 150 44.0
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 1.3e-18 97.1 150 44.0
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 1.7e-18 96.7 145 44.8
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.7e-18 96.7 153 43.8
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 2.3e-18 96.3 150 42.7
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.3e-18 96.3 145 57.9
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 2.3e-18 96.3 156 86.5
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 3.0e-18 95.9 155 44.5
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 3.0e-18 95.9 151 58.3
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 5.1e-18 95.1 151 44.4
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 6.6e-18 94.7 150 44.0
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 6.6e-18 94.7 153 43.1
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 8.7e-18 94.4 142 79.6
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 8.7e-18 94.4 142 80.3
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 1.1e-17 94.0 150 43.3
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 1.5e-17 93.6 150 42.7
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 1.5e-17 93.6 155 41.9
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 2.5e-17 92.8 156 80.8
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 2.5e-17 92.8 156 84.0
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 2.5e-17 92.8 56 91.1
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 3.3e-17 92.4 151 43.0
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 4.3e-17 92.0 150 42.7
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 4.3e-17 92.0 153 56.9
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 4.3e-17 92.0 155 82.6
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 5.6e-17 91.7 158 43.0
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 5.6e-17 91.7 153 43.1
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 5.6e-17 91.7 152 44.1
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 5.6e-17 91.7 153 41.8
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 9.6e-17 90.9 143 83.9
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 9.6e-17 90.9 143 83.9
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 9.6e-17 90.9 158 42.4
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 1.3e-16 90.5 151 43.0
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 1.3e-16 90.5 156 82.1
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 6.2e-16 88.2 143 42.7
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 8.1e-16 87.8 56 83.9
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 8.1e-16 87.8 156 41.0
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.4e-15 87.0 152 42.1
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.8e-15 86.7 141 88.7
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 4.0e-15 85.5 56 82.1
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 4.0e-15 85.5 56 83.9
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 1.2e-14 84.0 153 39.9
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 1.2e-14 84.0 56 82.1
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 1.5e-14 83.6 146 41.8
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 2.6e-14 82.8 155 40.0
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 2.6e-14 82.8 143 39.2
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 4.4e-14 82.0 151 39.1
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 4.4e-14 82.0 56 76.8
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 7.6e-14 81.3 130 43.1
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 7.6e-14 81.3 147 53.1
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 2.9e-13 79.3 151 39.1
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 2.9e-13 79.3 142 53.5
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 6.4e-13 78.2 144 37.5
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 8.4e-13 77.8 156 53.2
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 1.6e-11 73.6 151 38.4
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 1.6e-11 73.6 56 73.2
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 3.5e-11 72.4 156 51.9
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 4.6e-11 72.0 153 35.9
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 2.3e-10 69.7 150 79.3
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 3.3e-09 65.9 56 64.3
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 3.3e-09 65.9 141 36.9
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 6.2e-08 61.6 141 39.7
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 8.1e-08 61.2 124 35.5
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 4.0e-07 58.9 153 43.1
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.5e-06 57.0 135 81.5


User provided reference genes

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