Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 2352.0 1321 100.0
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1982.6 1321 81.0
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1976.1 1324 83.2
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1889.4 1343 79.6
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1764.6 1324 71.5
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1754.6 1263 76.0
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1696.0 1223 72.7
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1685.6 1266 69.9
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1683.3 1255 72.7
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1682.5 1232 72.2
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1674.8 1227 70.9
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1669.8 1302 71.0
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1666.0 1226 74.1
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1651.3 1227 72.6
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1648.3 1225 70.9
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1646.7 1227 70.6
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1644.0 1226 70.3
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1640.6 1239 70.6
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1622.1 1225 69.7
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1621.3 1181 71.0
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1619.4 1225 69.8
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1615.9 1230 70.6
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1614.0 1187 71.4
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1609.0 1223 69.0
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1606.3 1201 70.0
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1605.1 1226 69.7
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1602.0 1223 68.8
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1602.0 1229 68.8
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1591.2 1240 70.1
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1591.2 1226 68.0
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1590.1 1225 68.3
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1588.9 1182 69.8
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1584.3 1298 66.8
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1580.5 1279 67.9
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1576.6 1228 68.2
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1574.3 1225 67.4
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1572.8 1238 68.1
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1571.2 1235 68.3
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1570.1 1224 68.4
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1566.6 1201 68.8
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1562.0 1235 65.7
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1561.2 1229 68.3
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1559.7 1180 70.2
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1558.9 944 89.6
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1557.3 1231 67.6
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1555.4 1205 69.1
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1554.7 1219 67.8
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1550.0 1231 66.8
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1548.5 1226 67.2
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1546.9 1229 68.0
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1545.4 1242 66.4
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1543.1 1219 68.6
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1542.7 1227 65.9
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1542.3 1205 68.9
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1536.9 1215 66.6
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1536.2 1232 67.6
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1532.3 1247 66.4
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1530.4 1237 66.6
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1528.5 1226 66.4
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1527.3 1221 67.6
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1526.5 1228 65.8
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1526.5 1245 66.7
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1526.5 1232 67.1
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1525.4 1232 67.0
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1518.4 1225 65.8
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1513.4 1230 65.0
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1509.2 1235 67.0
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1508.8 1243 65.6
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1506.9 1188 67.5
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1506.5 1223 66.5
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1501.9 1216 65.5
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1493.8 1284 63.6
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1488.8 1237 66.1
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1486.9 1226 65.2
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1473.8 1226 65.0
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1473.8 1216 67.1
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1459.1 1223 65.5
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1455.3 1250 63.4
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1436.0 1241 64.5
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1434.1 1191 64.4
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1432.9 1254 62.2
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1427.5 1239 63.1
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1424.5 1198 64.9
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1421.0 1199 64.6
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1408.7 1217 63.4
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1405.2 1251 62.0
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1402.9 1193 64.9
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1402.9 1193 64.9
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1392.5 1211 63.6
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1384.8 1198 63.9
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1367.1 1231 61.1
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1362.4 1245 59.2
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1358.2 1080 67.3
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1322.8 1173 61.9
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1312.0 1236 58.4
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1308.5 1236 58.0
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1305.4 1266 57.3
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1278.1 1222 59.6
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1271.1 1219 58.2
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1244.2 1228 55.5
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1191.8 1231 52.0
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1187.6 1284 51.4
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1179.1 1061 62.3
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 0.0e+00 1176.4 734 82.2
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 0.0e+00 1166.4 1259 51.2
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 0.0e+00 1120.5 1250 50.7
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 3.1e-302 1042.3 1239 47.9
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 1.2e-298 1030.4 1225 48.7
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 2.4e-270 936.4 1224 47.5
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 3.1e-262 909.4 643 72.9
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 2.5e-227 793.5 1110 43.2
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 4.6e-205 719.5 824 56.1
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 4.6e-197 693.0 539 71.8
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 1.0e-196 691.8 429 80.9
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 4.6e-189 666.4 539 69.0
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 4.4e-184 649.8 452 74.6
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 1.9e-163 581.3 675 54.7
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.2e-157 562.0 1225 34.8
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 3.0e-156 557.4 1263 33.9
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 3.6e-149 533.9 1210 33.6
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 3.7e-146 523.9 1224 33.7
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 6.5e-143 513.1 606 48.8
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 7.7e-136 489.6 1238 33.2
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 3.2e-134 484.2 1159 32.3
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 5.0e-119 433.7 1034 33.7
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 1.4e-105 389.0 1029 32.1
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.6e-104 385.6 1302 28.4
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 5.1e-87 327.4 335 55.8
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 5.1e-79 300.8 526 38.0
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 6.6e-79 300.4 481 39.7
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 6.2e-77 293.9 247 61.5
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 6.0e-48 197.6 215 53.0
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 1.7e-42 179.5 1217 25.1
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.3e-39 169.1 348 34.5
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 1.5e-30 139.8 1086 25.2
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 5.7e-30 137.9 129 56.6
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 7.4e-30 137.5 138 58.0
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 3.4e-27 128.6 92 65.2
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 1.6e-24 119.8 143 46.2
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.3e-22 112.1 125 50.4
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 8.2e-21 107.5 187 39.0
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 2.4e-20 105.9 191 37.7
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 6.5e-18 97.8 84 63.1
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 1.9e-17 96.3 75 65.3
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 4.2e-17 95.1 111 49.5
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 4.2e-17 95.1 61 75.4
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 3.6e-16 92.0 76 56.6
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 3.0e-15 89.0 71 57.7
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 1.1e-14 87.0 75 54.7
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 7.0e-12 77.8 53 67.9
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 7.0e-12 77.8 53 67.9
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 7.0e-12 77.8 84 42.9
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 3.2e-09 68.9 86 46.5
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 7.2e-09 67.8 76 47.4
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 3.0e-07 62.4 35 80.0
Glyma.07G215100 Glycine max HOM05D005611 ORTHO05D006852 1.2e-06 60.5 36 75.0
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 2.0e-06 59.7 49 59.2
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 3.4e-06 58.9 41 73.2


User provided reference genes

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