Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia01433 Actinidia chinensis HOM05D000389 ORTHO05D053974 3.3e-101 371.7 187 100.0
Actinidia11068 Actinidia chinensis HOM05D000389 ORTHO05D000287 2.1e-23 113.2 199 42.7
Actinidia09876 Actinidia chinensis HOM05D000389 ORTHO05D000287 4.1e-19 99.0 199 38.2
Cpa.g.sc34.127 Carica papaya HOM05D000389 ORTHO05D000287 3.0e-17 92.8 219 37.0
Hma1.2p1_0213F.1_g090410 Hydrangea macrophylla HOM05D000389 ORTHO05D000287 3.9e-17 92.4 202 37.6
COL.COLO4_35405 Corchorus olitorius HOM05D000389 ORTHO05D000287 8.6e-17 91.3 219 35.2
Phvul.011G113300 Phaseolus vulgaris HOM05D000389 ORTHO05D000287 8.6e-17 91.3 219 35.2
Duzib248G0901 Durio zibethinus HOM05D000389 ORTHO05D000287 1.1e-16 90.9 219 35.2
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 1.5e-16 90.5 199 36.7
VMungo1127G1318 Vigna mungo HOM05D000389 ORTHO05D000287 1.9e-16 90.1 219 34.7
CSS0014717 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 2.5e-16 89.7 202 37.1
Prupe.3G235000 Prunus persica HOM05D000389 ORTHO05D000287 2.5e-16 89.7 219 35.2
Atru.chr6.3035 Acer truncatum HOM05D000389 ORTHO05D000287 3.3e-16 89.4 206 35.4
Ciclev10015132m.g Citrus clementina HOM05D000389 ORTHO05D000287 4.3e-16 89.0 219 33.8
Dinv03834 Davidia involucrata HOM05D000389 ORTHO05D000287 4.3e-16 89.0 202 37.1
Medtr4g037470 Medicago truncatula HOM05D000389 ORTHO05D000287 4.3e-16 89.0 202 37.1
Psat0s3526g0080 Pisum sativum HOM05D000389 ORTHO05D000287 5.6e-16 88.6 202 36.6
arahy.Tifrunner.gnm1.ann1.2DJ75K Arachis hypogaea HOM05D000389 ORTHO05D000287 7.3e-16 88.2 219 34.7
arahy.Tifrunner.gnm1.ann1.P2QV17 Arachis hypogaea HOM05D000389 ORTHO05D000287 7.3e-16 88.2 219 34.7
Glyma.12G109500 Glycine max HOM05D000389 ORTHO05D000287 7.3e-16 88.2 219 34.2
Lalb_Chr01g0005361 Lupinus albus HOM05D000389 ORTHO05D000287 7.3e-16 88.2 216 35.2
Thecc.02G175600 Theobroma cacao HOM05D000389 ORTHO05D000287 7.3e-16 88.2 219 34.7
CiPaw.04G123800 Carya illinoinensis HOM05D000389 ORTHO05D000287 9.5e-16 87.8 219 33.8
vmacro12273 Vaccinium macrocarpon HOM05D000389 ORTHO05D000287 9.5e-16 87.8 219 34.7
Ca_05302_v3 Cicer arietinum L. HOM05D000389 ORTHO05D000287 1.2e-15 87.4 202 36.1
Glyma.06G296200 Glycine max HOM05D000389 ORTHO05D000287 1.6e-15 87.0 219 34.2
RcHm_v2.0_Chr2g0162371 Rosa chinensis HOM05D000389 ORTHO05D000287 2.1e-15 86.7 219 34.2
CiPaw.03G173100 Carya illinoinensis HOM05D000389 ORTHO05D000287 2.8e-15 86.3 219 33.8
Migut.H01054 Erythranthe guttata HOM05D000389 ORTHO05D000287 2.8e-15 86.3 221 34.4
Potri.013G144100 Populus trichocarpa HOM05D000389 ORTHO05D000287 2.8e-15 86.3 220 34.1
Potri.019G103100 Populus trichocarpa HOM05D000389 ORTHO05D000287 2.8e-15 86.3 220 34.1
Sabra13G0116100 Salix brachista HOM05D000389 ORTHO05D000287 2.8e-15 86.3 220 34.1
BcaB01g01949 Brassica carinata HOM05D000389 ORTHO05D000287 3.6e-15 85.9 199 36.7
BcaC04g23973 Brassica carinata HOM05D000389 ORTHO05D000287 3.6e-15 85.9 199 36.7
A09p02750 Brassica napus HOM05D000389 ORTHO05D000287 3.6e-15 85.9 199 36.7
C09p02820 Brassica napus HOM05D000389 ORTHO05D000287 3.6e-15 85.9 199 36.7
BolC9t53208H Brassica oleracea HOM05D000389 ORTHO05D000287 3.6e-15 85.9 199 36.7
BraA09t35917Z Brassica rapa HOM05D000389 ORTHO05D000287 3.6e-15 85.9 199 36.7
Lj3g0021580 Lotus japonicus HOM05D000389 ORTHO05D000287 3.6e-15 85.9 202 35.1
Sp6g03470 Schrenkiella parvula HOM05D000389 ORTHO05D000287 4.7e-15 85.5 199 36.7
FvH4_6g45040 Fragaria vesca HOM05D000389 ORTHO05D000287 6.2e-15 85.1 219 33.3
FAN09G4640 Fragaria x ananassa HOM05D000389 ORTHO05D000287 6.2e-15 85.1 219 33.3
AT4G03415 Arabidopsis thaliana HOM05D000389 ORTHO05D000287 8.1e-15 84.7 199 36.2
AUR62037352 Chenopodium quinoa HOM05D000389 ORTHO05D000287 8.1e-15 84.7 202 33.7
AUR62042678 Chenopodium quinoa HOM05D000389 ORTHO05D000287 8.1e-15 84.7 202 33.7
Lalb_Chr03g0029251 Lupinus albus HOM05D000389 ORTHO05D000287 8.1e-15 84.7 203 35.5
Rhsim06G0148600 Rhododendron simsii HOM05D000389 ORTHO05D000287 8.1e-15 84.7 236 31.8
Duzib052G0079 Durio zibethinus HOM05D000389 ORTHO05D000287 1.1e-14 84.3 202 35.6
QL08p037803 Quercus lobata HOM05D000389 ORTHO05D000287 1.1e-14 84.3 202 34.2
Haze_13116 Corylus avellana HOM05D000389 ORTHO05D000287 1.4e-14 84.0 219 33.3
Thhalv10028637m.g Eutrema salsugineum HOM05D000389 ORTHO05D000287 1.4e-14 84.0 209 36.4
FAN02G0898 Fragaria x ananassa HOM05D000389 ORTHO05D000287 1.4e-14 84.0 219 32.9
FAN05G0690 Fragaria x ananassa HOM05D000389 ORTHO05D000287 1.4e-14 84.0 219 32.9
FAN14G1610 Fragaria x ananassa HOM05D000389 ORTHO05D000287 1.4e-14 84.0 219 33.3
Manes.13G149200 Manihot esculenta HOM05D000389 ORTHO05D000287 1.4e-14 84.0 219 33.3
Sabra19G0113900 Salix brachista HOM05D000389 ORTHO05D000287 1.4e-14 84.0 220 33.6
THA.LOC104801182 Tarenaya hassleriana HOM05D000389 ORTHO05D000287 1.4e-14 84.0 202 35.1
TWI36G0761 Tripterygium wilfordii HOM05D000389 ORTHO05D000287 1.4e-14 84.0 219 33.8
TWI75G0129 Tripterygium wilfordii HOM05D000389 ORTHO05D000287 1.4e-14 84.0 219 34.2
Cfa014567 Carpinus fangiana HOM05D000389 ORTHO05D000287 1.8e-14 83.6 219 33.3
Cc05_g06740 Coffea canephora HOM05D000389 ORTHO05D000287 1.8e-14 83.6 219 33.3
Eucgr.K00946 Eucalyptus grandis HOM05D000389 ORTHO05D000287 1.8e-14 83.6 202 34.2
MD17G1079800 Malus domestica HOM05D000389 ORTHO05D000287 2.3e-14 83.2 236 32.6
CSS0020283 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 3.1e-14 82.8 203 36.9
CSS0039272 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 3.1e-14 82.8 203 36.9
Aa31LG5G2870 Aethionema arabicum HOM05D000389 ORTHO05D000287 4.0e-14 82.4 199 35.7
Hma1.2p1_0875F.1_g231420 Hydrangea macrophylla HOM05D000389 ORTHO05D000287 4.0e-14 82.4 203 35.5
Carub.0006s3365 Capsella rubella HOM05D000389 ORTHO05D000287 5.2e-14 82.0 199 35.7
Solyc07g054300.3 Solanum lycopersicum HOM05D000389 ORTHO05D000287 5.2e-14 82.0 219 33.8
Sopen07g028250 Solanum pennellii HOM05D000389 ORTHO05D000287 5.2e-14 82.0 219 33.8
PGSC0003DMG400018314 Solanum tuberosum HOM05D000389 ORTHO05D000287 5.2e-14 82.0 219 33.8
Actinidia39306 Actinidia chinensis HOM05D000389 ORTHO05D000287 6.8e-14 81.6 202 35.6
AL6G49480 Arabidopsis lyrata HOM05D000389 ORTHO05D000287 6.8e-14 81.6 199 35.7
Ca_01514_v3 Cicer arietinum L. HOM05D000389 ORTHO05D000287 6.8e-14 81.6 203 35.5
Hund08018 Selenicereus undatus HOM05D000389 ORTHO05D000287 6.8e-14 81.6 202 34.2
CARHR251810 Cardamine hirsuta HOM05D000389 ORTHO05D000287 8.9e-14 81.3 199 36.2
EL10Ac9g20688 Beta vulgaris HOM05D000389 ORTHO05D000287 1.5e-13 80.5 219 31.5
THA.LOC104826028 Tarenaya hassleriana HOM05D000389 ORTHO05D000287 1.5e-13 80.5 202 34.2
Medtr2g090190 Medicago truncatula HOM05D000389 ORTHO05D000287 2.0e-13 80.1 204 36.3
Actinidia30481 Actinidia chinensis HOM05D000389 ORTHO05D000287 2.6e-13 79.7 84 60.7
Gorai.012G130800 Gossypium raimondii HOM05D000389 ORTHO05D000287 2.6e-13 79.7 203 34.5
CANSAT64G2401 Cannabis sativa HOM05D000389 ORTHO05D000287 3.4e-13 79.3 202 33.7
CAN.G248.48 Capsicum annuum HOM05D000389 ORTHO05D000287 3.4e-13 79.3 219 32.9
Gohir.A04G105000 Gossypium hirsutum HOM05D000389 ORTHO05D000287 3.4e-13 79.3 220 32.7
Lj8C115G8 Lonicera japonica HOM05D000389 ORTHO05D000287 4.4e-13 79.0 84 60.7
Gohir.D04G144800 Gossypium hirsutum HOM05D000389 ORTHO05D000287 5.8e-13 78.6 220 32.7
Peaxi162Scf00132g00719 Petunia axillaris HOM05D000389 ORTHO05D000287 5.8e-13 78.6 219 32.4
vmacro09273 Vaccinium macrocarpon HOM05D000389 ORTHO05D000287 5.8e-13 78.6 202 34.2
Hund08015 Selenicereus undatus HOM05D000389 ORTHO05D000287 7.6e-13 78.2 219 32.0
Glyma.12G202400 Glycine max HOM05D000389 ORTHO05D000287 9.9e-13 77.8 202 35.1
ClCG02G001150 Citrullus lanatus HOM05D000389 ORTHO05D000287 1.3e-12 77.4 219 32.0
Phvul.005G106100 Phaseolus vulgaris HOM05D000389 ORTHO05D000287 1.3e-12 77.4 202 35.6
SalBow1G3639 Salvia bowleyana HOM05D000389 ORTHO05D000287 1.7e-12 77.0 203 35.0
Sc12g0002820 Simmondsia chinensis HOM05D000389 ORTHO05D000287 2.2e-12 76.6 219 32.4
Psat5g270760 Pisum sativum HOM05D000389 ORTHO05D000287 3.7e-12 75.9 204 35.3
Lalb_Chr14g0366751 Lupinus albus HOM05D000389 ORTHO05D000287 4.9e-12 75.5 202 34.2
Lalb_Chr22g0356471 Lupinus albus HOM05D000389 ORTHO05D000287 4.9e-12 75.5 219 33.3
Nitab4.5_0001090g0120 Nicotiana tabacum HOM05D000389 ORTHO05D000287 4.9e-12 75.5 207 32.9
MELO3C018749.2 Cucumis melo HOM05D000389 ORTHO05D000287 6.4e-12 75.1 219 31.5
CsaV3_7G004290 Cucumis sativus L. HOM05D000389 ORTHO05D000287 6.4e-12 75.1 219 31.5
DCAR_023671 Daucus carota HOM05D000389 ORTHO05D000287 6.4e-12 75.1 219 32.9
Nitab4.5_0005380g0040 Nicotiana tabacum HOM05D000389 ORTHO05D000287 6.4e-12 75.1 224 31.7
TAR626G0252 Trochodendron aralioides HOM05D000389 ORTHO05D000287 8.4e-12 74.7 202 32.7
arahy.Tifrunner.gnm1.ann1.VA11TJ Arachis hypogaea HOM05D000389 ORTHO05D000287 1.4e-11 73.9 238 30.7
Lj3g0008488 Lotus japonicus HOM05D000389 ORTHO05D000287 1.4e-11 73.9 202 33.2
Sp1g02500 Schrenkiella parvula HOM05D000389 ORTHO05D000287 1.4e-11 73.9 200 34.5
VMungo1080G1582 Vigna mungo HOM05D000389 ORTHO05D000287 1.4e-11 73.9 202 34.2
CAN.G168.35 Capsicum annuum HOM05D000389 ORTHO05D000287 2.4e-11 73.2 203 33.5
Glyma.13G299300 Glycine max HOM05D000389 ORTHO05D000287 2.4e-11 73.2 202 34.2
Ah.01g005260 Amaranthus hybridus HOM05D000389 ORTHO05D000287 3.2e-11 72.8 202 32.7
Peaxi162Scf01258g00120 Petunia axillaris HOM05D000389 ORTHO05D000287 3.2e-11 72.8 209 32.5
PGR142G2560 Punica granatum HOM05D000389 ORTHO05D000287 3.2e-11 72.8 84 54.8
Solyc10g008490.3 Solanum lycopersicum HOM05D000389 ORTHO05D000287 4.1e-11 72.4 220 32.3
Sopen10g004310 Solanum pennellii HOM05D000389 ORTHO05D000287 4.1e-11 72.4 220 32.3
arahy.Tifrunner.gnm1.ann1.5P1FU9 Arachis hypogaea HOM05D000389 ORTHO05D000287 5.4e-11 72.0 238 30.7
Rhsim04G0066700 Rhododendron simsii HOM05D000389 ORTHO05D000287 5.4e-11 72.0 202 33.2
Gohir.A03G158400 Gossypium hirsutum HOM05D000389 ORTHO05D000287 7.1e-11 71.6 219 30.6
Nn1g03983 Nelumbo nucifera HOM05D000389 ORTHO05D000287 7.1e-11 71.6 202 32.7
Duzib132G0919 Durio zibethinus HOM05D000389 ORTHO05D000287 9.2e-11 71.2 219 31.1
Thhalv10007577m.g Eutrema salsugineum HOM05D000389 ORTHO05D000287 1.6e-10 70.5 200 32.5
Gohir.D02G181600 Gossypium hirsutum HOM05D000389 ORTHO05D000287 1.6e-10 70.5 202 32.2
Gorai.005G204100 Gossypium raimondii HOM05D000389 ORTHO05D000287 1.6e-10 70.5 202 32.2
PGSC0003DMG400021678 Solanum tuberosum HOM05D000389 ORTHO05D000287 2.7e-10 69.7 220 31.8
GSVIVG01030553001 Vitis vinifera HOM05D000389 ORTHO05D000287 2.7e-10 69.7 202 31.7
BcaB02g06916 Brassica carinata HOM05D000389 ORTHO05D000287 4.6e-10 68.9 200 32.5
ECA246G3935 Erigeron canadensis HOM05D000389 ORTHO05D000287 4.6e-10 68.9 201 31.8
TAR624G1062 Trochodendron aralioides HOM05D000389 ORTHO05D000287 7.8e-10 68.2 81 53.1
Ah.01g005290 Amaranthus hybridus HOM05D000389 ORTHO05D000287 1.0e-09 67.8 84 53.6
Lsat_1_v5_gn_8_132220 Lactuca sativa HOM05D000389 ORTHO05D000287 1.0e-09 67.8 199 32.2
arahy.Tifrunner.gnm1.ann1.1984FG Arachis hypogaea HOM05D000389 ORTHO05D000287 1.3e-09 67.4 84 53.6
Carub.0001s0271 Capsella rubella HOM05D000389 ORTHO05D000287 1.3e-09 67.4 200 32.5
HanXRQChr17g0553371 Helianthus annuus HOM05D000389 ORTHO05D000287 1.3e-09 67.4 199 33.2
HanXRQChr17g0542581 Helianthus annuus HOM05D000389 ORTHO05D000287 1.7e-09 67.0 199 30.7
Sed0027295 Sechium edule HOM05D000389 ORTHO05D000287 1.7e-09 67.0 219 29.2
PSO541G2726 Papaver somniferum HOM05D000389 ORTHO05D000287 3.0e-09 66.2 202 29.2
PSO675G4628 Papaver somniferum HOM05D000389 ORTHO05D000287 3.0e-09 66.2 202 29.2
TPR.G36319 Trifolium pratense HOM05D000389 ORTHO05D000287 3.0e-09 66.2 160 38.1
AL1G13090 Arabidopsis lyrata HOM05D000389 ORTHO05D000287 5.1e-09 65.5 200 32.0
AT1G03590 Arabidopsis thaliana HOM05D000389 ORTHO05D000287 6.6e-09 65.1 200 31.5
arahy.Tifrunner.gnm1.ann1.7L6ESV Arachis hypogaea HOM05D008664 ORTHO05D000174 8.6e-09 64.7 84 52.4
arahy.Tifrunner.gnm1.ann1.Q65LH8 Arachis hypogaea HOM05D000389 ORTHO05D012814 8.6e-09 64.7 84 52.4
CARHR002930 Cardamine hirsuta HOM05D000389 ORTHO05D000287 8.6e-09 64.7 200 32.0
arahy.Tifrunner.gnm1.ann1.102QYH Arachis hypogaea HOM05D000389 ORTHO05D000287 1.5e-08 63.9 84 52.4
Sed0017965 Sechium edule HOM05D000389 ORTHO05D000287 1.9e-08 63.5 84 51.2
Lsat_1_v5_gn_3_39461 Lactuca sativa HOM05D000389 ORTHO05D000287 2.5e-08 63.2 204 30.9
BcaC07g36954 Brassica carinata HOM05D000389 ORTHO05D000287 7.3e-08 61.6 200 31.5
A08p37310 Brassica napus HOM05D000389 ORTHO05D000287 7.3e-08 61.6 199 30.7
C08p00690 Brassica napus HOM05D000389 ORTHO05D000287 7.3e-08 61.6 200 31.5
BolC8t46867H Brassica oleracea HOM05D000389 ORTHO05D000287 7.3e-08 61.6 200 31.5
BraA08t35628Z Brassica rapa HOM05D000389 ORTHO05D000287 7.3e-08 61.6 199 30.7
Aqoxy1G02626 Aquilegia oxysepala HOM05D000389 ORTHO05D000287 9.6e-08 61.2 202 28.7
BcaC05g24520 Brassica carinata HOM05D000389 ORTHO05D000287 1.4e-06 57.4 202 30.2
A10p02110 Brassica napus HOM05D000389 ORTHO05D000287 1.4e-06 57.4 201 30.8
BraA10t42480Z Brassica rapa HOM05D000389 ORTHO05D000287 1.4e-06 57.4 201 30.8
C05p02020 Brassica napus HOM05D000389 ORTHO05D000287 2.4e-06 56.6 201 30.3
MBI02_g19255_MAGBIO Magnolia biondii HOM05D000389 ORTHO05D000287 2.4e-06 56.6 199 28.6
Sed0003383 Sechium edule HOM05D000389 ORTHO05D000287 5.2e-06 55.5 244 28.7
Lj1C733T6 Lonicera japonica HOM05D000389 ORTHO05D000287 6.8e-06 55.1 218 28.0


User provided reference genes

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