Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 1.4e-72 276.2 139 100.0
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 6.8e-59 230.7 137 82.5
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 1.7e-57 226.1 139 80.6
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 1.2e-55 219.9 131 84.7
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 1.5e-50 203.0 139 76.3
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 9.2e-48 193.7 125 79.2
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 4.6e-47 191.4 124 71.8
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 7.8e-47 190.7 115 76.5
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 1.0e-46 190.3 112 79.5
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.3e-46 189.9 115 76.5
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.3e-46 189.9 115 76.5
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.3e-46 189.9 115 76.5
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 1.7e-46 189.5 123 73.2
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.3e-46 189.1 115 76.5
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.3e-46 189.1 115 75.7
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.0e-46 188.7 115 76.5
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.9e-46 188.3 115 75.7
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 3.9e-46 188.3 112 79.5
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 3.9e-46 188.3 127 73.2
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.0e-46 188.0 115 75.7
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-45 186.8 115 75.7
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.9e-45 186.0 134 70.9
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.9e-45 186.0 122 71.3
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 7.3e-45 184.1 122 73.8
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.6e-44 183.0 122 72.1
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 3.1e-43 178.7 126 69.0
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 4.0e-43 178.3 116 73.3
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.0e-43 178.3 115 73.0
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 4.0e-43 178.3 121 76.9
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.2e-43 177.9 115 73.9
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.2e-43 177.9 115 73.0
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 6.8e-43 177.6 121 71.9
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 8.9e-43 177.2 158 58.2
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.6e-42 175.6 115 72.2
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 2.6e-42 175.6 135 63.0
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 7.5e-42 174.1 113 76.1
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 7.5e-42 174.1 128 68.0
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 1.3e-41 173.3 116 71.6
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 1.7e-41 172.9 140 65.0
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 2.9e-41 172.2 110 74.5
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 6.4e-41 171.0 134 64.9
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 1.1e-40 170.2 126 65.1
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 1.1e-40 170.2 122 65.6
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-40 169.9 101 76.2
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 2.4e-40 169.1 110 72.7
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 3.2e-40 168.7 124 64.5
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 4.1e-40 168.3 135 62.2
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 2.0e-39 166.0 122 67.2
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 3.5e-39 165.2 119 68.1
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 4.6e-39 164.9 107 73.8
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 6.0e-39 164.5 121 66.9
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 1.3e-38 163.3 135 60.7
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 1.7e-38 162.9 126 65.9
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.7e-38 162.9 127 63.0
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 2.3e-38 162.5 111 69.4
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 8.6e-38 160.6 127 63.8
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 1.1e-37 160.2 116 65.5
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 1.5e-37 159.8 111 66.7
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 2.5e-37 159.1 127 60.6
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 3.3e-37 158.7 115 67.0
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 7.3e-37 157.5 119 62.2
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 9.5e-37 157.1 122 64.8
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 9.5e-37 157.1 115 65.2
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.2e-36 156.8 123 60.2
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 4.7e-36 154.8 125 62.4
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 8.1e-36 154.1 122 63.1
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 2.3e-35 152.5 139 56.8
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 6.8e-35 151.0 111 64.9
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 3.4e-34 148.7 135 54.8
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 5.8e-34 147.9 138 56.5
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 5.8e-34 147.9 138 56.5
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 7.5e-34 147.5 114 62.3
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 9.8e-34 147.1 127 60.6
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.1e-32 143.7 149 49.7
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 2.1e-31 139.4 88 72.7
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 2.1e-31 139.4 123 60.2
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 2.7e-31 139.0 112 65.2
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.0e-31 137.9 82 78.0
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 3.0e-30 135.6 115 57.4
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 4.3e-29 131.7 124 55.6
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 5.6e-29 131.3 133 54.1
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.2e-28 130.2 125 54.4
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.1e-28 129.4 82 75.6
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 2.1e-28 129.4 128 50.8
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 6.2e-28 127.9 207 39.6
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 3.1e-27 125.6 110 62.7
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 2.0e-26 122.9 95 63.2
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 2.0e-26 122.9 114 58.8
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 4.4e-26 121.7 122 53.3
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 7.6e-26 120.9 119 52.1
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 1.7e-25 119.8 126 50.8
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 2.9e-25 119.0 123 53.7
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 4.9e-25 118.2 95 60.0
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.1e-24 117.1 101 58.4
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 1.9e-24 116.3 127 48.0
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 1.9e-24 116.3 122 51.6
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 2.4e-24 115.9 117 51.3
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 7.8e-23 110.9 117 47.9
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 7.8e-23 110.9 117 49.6
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 1.0e-22 110.5 112 48.2
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 1.7e-22 109.8 116 48.3
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 3.0e-22 109.0 80 66.2
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 3.0e-22 109.0 119 52.9
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 5.1e-22 108.2 110 52.7
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 6.6e-22 107.8 117 48.7
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.5e-21 106.7 123 49.6
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 1.5e-21 106.7 120 48.3
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 3.3e-21 105.5 117 46.2
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 4.3e-21 105.1 115 50.4
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 8.1e-20 100.9 110 50.0
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.4e-19 100.1 127 44.1
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 3.1e-19 99.0 125 43.2
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 3.1e-19 99.0 100 48.0
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 6.8e-19 97.8 124 44.4
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 8.9e-19 97.4 62 74.2
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 8.9e-19 97.4 74 63.5
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 1.5e-18 96.7 110 49.1
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 1.5e-18 96.7 111 45.9
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 2.2e-17 92.8 86 57.0
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 4.9e-17 91.7 104 50.0
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 1.1e-16 90.5 74 58.1
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 1.1e-16 90.5 65 63.1
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 7.1e-16 87.8 64 57.8
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 2.1e-15 86.3 128 37.5
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 1.5e-13 80.1 108 41.7
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 1.9e-13 79.7 90 48.9
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 4.8e-12 75.1 113 38.9
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 8.1e-12 74.3 46 73.9
SGA_v2.0_scaffold4G02008 Striga asiatica HOM05D000346 ORTHO05D000326 2.4e-11 72.8 64 56.2
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 3.1e-11 72.4 51 64.7
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 4.0e-11 72.0 51 64.7
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.3e-09 67.0 61 50.8
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 8.4e-09 64.3 81 42.0
RcHm_v2.0_Chr5g0034431 Rosa chinensis HOM05D005439 ORTHO05D006793 8.4e-09 64.3 50 60.0
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 1.1e-08 63.9 81 42.0
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 2.1e-07 59.7 44 68.2
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 1.3e-06 57.0 45 60.0
FAN09G3549 Fragaria x ananassa HOM05D005439 ORTHO05D006793 5.1e-06 55.1 46 54.3


User provided reference genes

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