Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 5.4e-181 637.5 315 100.0
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 3.3e-170 601.7 315 94.3
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 3.1e-168 595.1 315 92.7
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 2.0e-167 592.4 315 93.3
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 2.0e-167 592.4 315 92.1
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.4e-167 591.7 330 89.4
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 4.9e-166 587.8 313 92.0
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 8.4e-166 587.0 313 92.0
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 9.3e-165 583.6 315 90.2
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 9.3e-165 583.6 315 89.5
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 1.6e-164 582.8 315 89.5
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 1.3e-163 579.7 313 89.5
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 5.1e-163 577.8 315 89.2
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 5.1e-163 577.8 315 89.2
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 1.1e-162 576.6 313 89.1
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.1e-162 576.6 315 88.9
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 1.1e-162 576.6 313 88.5
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 1.9e-162 575.9 316 88.3
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 7.4e-162 573.9 315 87.0
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 2.1e-161 572.4 313 88.5
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 2.8e-161 572.0 315 87.6
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 2.8e-161 572.0 316 88.3
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 6.3e-161 570.9 315 89.2
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 1.4e-160 569.7 315 88.9
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 4.1e-160 568.2 338 84.0
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 6.9e-160 567.4 315 87.9
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 9.0e-160 567.0 313 87.5
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 1.2e-159 566.6 315 86.7
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 2.0e-159 565.8 315 87.3
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 2.6e-159 565.5 315 87.3
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 3.4e-159 565.1 315 87.3
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 5.9e-159 564.3 315 87.0
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 7.6e-159 563.9 314 88.9
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 1.3e-158 563.1 315 87.9
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 1.7e-158 562.8 315 87.0
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 1.7e-158 562.8 315 87.0
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 2.2e-158 562.4 315 87.0
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 2.2e-158 562.4 316 87.0
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 2.2e-158 562.4 316 87.7
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.2e-158 562.4 315 87.9
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 2.2e-158 562.4 315 87.9
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 2.9e-158 562.0 315 86.3
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 2.9e-158 562.0 315 86.0
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 3.8e-158 561.6 313 87.9
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 3.8e-158 561.6 315 87.3
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 6.5e-158 560.8 313 85.9
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 6.5e-158 560.8 316 87.3
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 8.5e-158 560.5 316 87.3
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 8.5e-158 560.5 315 87.6
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.4e-157 559.7 315 86.7
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 1.9e-157 559.3 315 85.7
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 1.9e-157 559.3 315 86.3
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 1.9e-157 559.3 316 87.0
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 4.2e-157 558.1 309 89.0
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 4.2e-157 558.1 315 86.0
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 4.2e-157 558.1 315 86.3
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 5.5e-157 557.8 309 87.4
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.7e-156 555.4 313 85.0
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 2.7e-156 555.4 317 86.8
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 3.6e-156 555.1 315 85.4
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 4.6e-156 554.7 315 85.4
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 4.6e-156 554.7 316 84.8
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 6.1e-156 554.3 316 86.4
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 6.1e-156 554.3 316 86.1
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 6.1e-156 554.3 316 86.1
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.3e-155 553.1 316 85.8
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 3.9e-155 551.6 314 84.1
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 1.5e-154 549.7 322 84.2
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 1.9e-154 549.3 315 83.5
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 3.3e-154 548.5 315 85.1
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 3.3e-154 548.5 315 84.4
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 4.3e-154 548.1 314 83.8
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 5.7e-154 547.7 315 84.1
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 5.7e-154 547.7 315 84.1
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 7.4e-154 547.4 315 85.1
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 9.7e-154 547.0 313 85.3
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 9.7e-154 547.0 315 86.3
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 1.3e-153 546.6 313 85.0
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 1.3e-153 546.6 314 83.1
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 1.3e-153 546.6 315 84.8
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 1.6e-153 546.2 314 82.8
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.2e-153 545.8 337 81.3
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 2.8e-153 545.4 315 83.2
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 6.3e-153 544.3 312 85.3
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 6.3e-153 544.3 315 83.5
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 1.1e-152 543.5 315 82.5
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 2.0e-151 539.3 315 85.1
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 5.9e-151 537.7 315 81.9
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 1.0e-150 537.0 319 81.5
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 2.5e-149 532.3 306 84.3
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 5.5e-149 531.2 309 83.5
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 5.5e-149 531.2 314 83.4
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.7e-148 528.9 317 83.9
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 3.6e-148 528.5 314 83.1
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 3.6e-148 528.5 317 83.3
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.6e-148 528.5 317 83.6
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.6e-148 528.5 317 83.3
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 3.6e-148 528.5 315 82.9
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.6e-148 528.1 317 83.3
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.0e-147 526.9 317 83.0
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.0e-147 526.9 317 83.0
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 3.0e-147 525.4 383 71.5
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 3.9e-147 525.0 313 81.8
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 9.7e-146 520.4 321 80.7
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 2.2e-145 519.2 317 81.7
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 2.8e-145 518.8 317 83.0
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 6.3e-145 517.7 315 81.9
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 4.1e-144 515.0 318 82.1
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 9.1e-144 513.8 309 81.9
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 5.9e-143 511.1 310 79.7
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 5.5e-141 504.6 285 84.6
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 2.7e-140 502.3 318 80.5
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 6.1e-140 501.1 325 77.2
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 7.9e-140 500.7 282 86.2
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 1.0e-139 500.4 315 80.3
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 1.0e-139 500.4 283 85.5
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.8e-139 499.6 313 81.2
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 1.1e-138 496.9 294 80.3
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 1.3e-137 493.4 314 79.6
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 1.7e-137 493.0 288 83.0
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 4.8e-137 491.5 461 59.0
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 1.2e-135 486.9 315 76.8
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 1.6e-135 486.5 317 75.1
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 4.5e-135 485.0 314 78.0
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 1.3e-134 483.4 313 78.0
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 1.8e-131 473.0 310 75.2
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 1.2e-130 470.3 313 75.1
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 7.2e-125 451.1 240 91.2
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 8.0e-124 447.6 316 71.2
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 4.8e-121 438.3 284 75.0
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 2.4e-120 436.0 262 83.2
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 5.4e-120 434.9 312 67.3
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 9.5e-117 424.1 314 68.2
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.3e-99 366.3 213 81.7
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 7.8e-87 324.7 252 63.9
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 8.6e-86 321.2 173 89.0
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.6e-84 317.0 177 85.9
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 2.3e-78 296.6 192 76.6
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 1.4e-72 277.3 314 49.0
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 1.3e-70 270.8 164 79.9
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 2.3e-70 270.0 315 47.0
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 1.9e-69 266.9 272 52.9
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.1e-68 263.5 151 83.4
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.1e-68 263.5 151 83.4
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.7e-65 253.8 168 70.8
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 5.1e-62 242.3 184 68.5
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 3.8e-57 226.1 275 49.1
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 4.9e-57 225.7 300 43.0
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 4.2e-56 222.6 112 93.8
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 2.3e-54 216.9 308 40.6
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 1.9e-53 213.8 182 62.1
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.4e-51 207.6 149 71.8
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.4e-50 203.0 142 71.8
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.6e-47 194.1 179 59.8
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 1.5e-45 187.6 285 44.2
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 7.4e-45 185.3 129 69.0
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 3.7e-44 183.0 113 73.5
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 1.4e-43 181.0 113 72.6
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 1.4e-43 181.0 113 72.6
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.8e-43 180.6 103 83.5
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 2.0e-42 177.2 137 65.0
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 6.5e-41 172.2 169 55.6
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.4e-40 168.3 116 75.0
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 9.1e-35 151.8 277 35.0
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 3.0e-30 136.7 108 63.0
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 8.8e-30 135.2 114 64.0
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.9e-25 120.2 68 82.4
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 2.1e-23 114.0 80 70.0
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 2.1e-23 114.0 80 70.0
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 4.7e-23 112.8 90 71.1
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 1.8e-22 110.9 60 83.3
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 4.4e-21 106.3 72 66.7
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 1.8e-19 100.9 117 46.2
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 1.6e-18 97.8 102 56.9
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 1.0e-17 95.1 53 81.1
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 7.2e-16 89.0 53 77.4
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 9.4e-16 88.6 47 87.2
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 2.7e-15 87.0 52 78.8
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 7.7e-10 68.9 44 75.0


User provided reference genes

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