Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia00905 Actinidia chinensis HOM05D007392 ORTHO05D009181 5.2e-75 284.3 141 100.0
Actinidia16241 Actinidia chinensis HOM05D007392 ORTHO05D009181 3.1e-51 205.3 139 80.6
Dinv13477 Davidia involucrata HOM05D007392 ORTHO05D009181 1.2e-39 166.8 146 64.4
Cc01_g00150 Coffea canephora HOM05D007392 ORTHO05D009181 1.3e-36 156.8 146 62.3
ECA233G2404 Erigeron canadensis HOM05D007392 ORTHO05D009181 1.8e-30 136.3 144 58.3
Lsat_1_v5_gn_6_55560 Lactuca sativa HOM05D007392 ORTHO05D009181 3.9e-30 135.2 145 60.0
Rhsim13G0233100 Rhododendron simsii HOM05D007392 ORTHO05D009181 5.1e-30 134.8 122 63.9
GSVIVG01025476001 Vitis vinifera HOM05D007392 ORTHO05D009181 7.4e-29 131.0 139 56.8
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 1.8e-27 126.3 140 54.3
CiPaw.13G177600 Carya illinoinensis HOM05D007392 ORTHO05D009181 1.2e-26 123.6 139 56.1
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 5.9e-26 121.3 139 58.3
Sopen01g001550 Solanum pennellii HOM05D007392 ORTHO05D009181 5.9e-26 121.3 143 51.0
Solyc01g005530.3 Solanum lycopersicum HOM05D007392 ORTHO05D009181 1.0e-25 120.6 143 48.3
Nitab4.5_0006195g0060 Nicotiana tabacum HOM05D007392 ORTHO05D009181 5.0e-25 118.2 122 62.3
PGSC0003DMG402032165 Solanum tuberosum HOM05D007392 ORTHO05D009181 6.5e-25 117.9 143 48.3
FAN11G3804 Fragaria x ananassa HOM05D007392 ORTHO05D009181 8.5e-25 117.5 144 53.5
Potri.003G221800 Populus trichocarpa HOM05D007392 ORTHO05D009181 1.4e-24 116.7 140 52.1
Potri.001G003300 Populus trichocarpa HOM05D007392 ORTHO05D009181 1.9e-24 116.3 142 52.1
MD03G1003200 Malus domestica HOM05D007392 ORTHO05D009181 2.5e-24 115.9 151 49.7
FAN16G0802 Fragaria x ananassa HOM05D007392 ORTHO05D009181 3.2e-24 115.5 147 49.7
FvH4_3g45780 Fragaria vesca HOM05D007392 ORTHO05D009181 7.2e-24 114.4 145 52.4
Manes.15G109800 Manihot esculenta HOM05D007392 ORTHO05D009181 7.2e-24 114.4 151 47.0
Nitab4.5_0000551g0100 Nicotiana tabacum HOM05D007392 ORTHO05D009181 7.2e-24 114.4 121 62.0
SGA_v2.0_scaffold6G03356 Striga asiatica HOM05D007392 ORTHO05D009181 1.2e-23 113.6 149 50.3
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 2.1e-23 112.8 142 50.7
SalBow3G3897 Salvia bowleyana HOM05D007392 ORTHO05D009181 2.7e-23 112.5 146 46.6
TAR623G1707 Trochodendron aralioides HOM05D007392 ORTHO05D009181 3.6e-23 112.1 137 54.0
CAN.G1834.12 Capsicum annuum HOM05D007392 ORTHO05D009181 6.1e-23 111.3 147 47.6
Peaxi162Scf00705g00062 Petunia axillaris HOM05D007392 ORTHO05D009181 7.9e-23 110.9 139 51.8
RcHm_v2.0_Chr5g0083851 Rosa chinensis HOM05D007392 ORTHO05D009181 1.8e-22 109.8 144 50.0
PSO384G3152 Papaver somniferum HOM05D007392 ORTHO05D009181 3.9e-22 108.6 139 47.5
Ciclev10017000m.g Citrus clementina HOM05D007392 ORTHO05D009181 5.1e-22 108.2 158 46.8
PSO339G3225 Papaver somniferum HOM05D007392 ORTHO05D009181 5.1e-22 108.2 140 48.6
QL01p003594 Quercus lobata HOM05D007392 ORTHO05D009181 1.1e-21 107.1 166 46.4
vmacro04261 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 3.3e-21 105.5 104 63.5
Oeu004754.1 Olea europaea HOM05D007392 ORTHO05D009181 4.4e-21 105.1 118 55.1
Aqoxy2G00525 Aquilegia oxysepala HOM05D007392 ORTHO05D009181 5.7e-21 104.8 135 51.1
Oeu059652.1 Olea europaea HOM05D007392 ORTHO05D009181 1.7e-20 103.2 121 50.4
Prupe.6G002800 Prunus persica HOM05D007392 ORTHO05D009181 4.8e-20 101.7 119 53.8
Nn2g15869 Nelumbo nucifera HOM05D007392 ORTHO05D009181 8.2e-20 100.9 145 47.6
Sabra03G0165000 Salix brachista HOM05D007392 ORTHO05D009181 1.5e-18 96.7 118 52.5
DCAR_032194 Daucus carota HOM05D007392 ORTHO05D009181 1.0e-17 94.0 133 45.1
SGA_v2.0_scaffold6G03313 Striga asiatica HOM05D007392 ORTHO05D009181 1.3e-17 93.6 139 43.2
vmacro23199 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 2.9e-17 92.4 97 61.9
A05p36050 Brassica napus HOM05D007392 ORTHO05D009181 1.1e-16 90.5 170 43.5
BolC1t05102H Brassica oleracea HOM05D007392 ORTHO05D009181 1.1e-16 90.5 154 43.5
C01p51590 Brassica napus HOM05D007392 ORTHO05D009181 1.4e-16 90.1 154 44.2
Sc09g0000040 Simmondsia chinensis HOM05D007392 ORTHO05D009181 1.4e-16 90.1 163 41.7
A01p40100 Brassica napus HOM05D007392 ORTHO05D009181 1.9e-16 89.7 153 45.1
BraA01t04052Z Brassica rapa HOM05D007392 ORTHO05D009181 1.9e-16 89.7 153 45.1
Carub.0003s1294 Capsella rubella HOM05D007392 ORTHO05D009181 1.9e-16 89.7 167 41.9
Eucgr.J01763 Eucalyptus grandis HOM05D007392 ORTHO05D009181 1.9e-16 89.7 145 44.8
AT3G13480 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 3.2e-16 89.0 170 41.2
THA.LOC104810320 Tarenaya hassleriana HOM05D007392 ORTHO05D009181 4.2e-16 88.6 153 43.1
CsaV3_1G041630 Cucumis sativus L. HOM05D007392 ORTHO05D009181 5.5e-16 88.2 141 42.6
BcaC05g29176 Brassica carinata HOM05D007392 ORTHO05D009181 7.2e-16 87.8 170 41.8
FAN25G2102 Fragaria x ananassa HOM05D007392 ORTHO05D009181 7.2e-16 87.8 122 47.5
BcaB04g18766 Brassica carinata HOM05D007392 ORTHO05D009181 9.4e-16 87.4 155 42.6
MELO3C015574.2 Cucumis melo HOM05D007392 ORTHO05D009181 1.6e-15 86.7 142 43.7
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 2.1e-15 86.3 135 44.4
MD11G1003000 Malus domestica HOM05D007392 ORTHO05D009181 2.7e-15 85.9 149 43.6
CARHR088140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 3.6e-15 85.5 166 41.0
Sabra01G0002400 Salix brachista HOM05D007392 ORTHO05D009181 4.7e-15 85.1 142 43.7
MSTRG.20935 Avicennia marina HOM05D000287 ORTHO05D000319 1.0e-14 84.0 124 46.0
Sp3g11690 Schrenkiella parvula HOM05D007392 ORTHO05D009181 1.8e-14 83.2 176 39.2
Migut.D02593 Erythranthe guttata HOM05D007392 ORTHO05D009181 3.0e-14 82.4 142 41.5
Thhalv10021633m.g Eutrema salsugineum HOM05D007392 ORTHO05D009181 3.9e-14 82.0 175 40.0
Migut.D02571 Erythranthe guttata HOM05D007392 ORTHO05D009181 5.2e-14 81.6 141 43.3
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 5.2e-14 81.6 139 41.7
AL3G25390 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 6.7e-14 81.3 168 40.5
Nn7g35849 Nelumbo nucifera HOM05D007392 ORTHO05D009181 8.8e-14 80.9 123 47.2
PGR119G0135 Punica granatum HOM05D007392 ORTHO05D009181 4.4e-13 78.6 148 41.2
EL10Ac4g10390 Beta vulgaris HOM05D007392 ORTHO05D009181 4.1e-11 72.0 132 41.7
BraA03t12977Z Brassica rapa HOM05D007392 ORTHO05D009181 1.2e-10 70.5 170 40.0
C05p54400 Brassica napus HOM05D007392 ORTHO05D009181 2.6e-10 69.3 145 40.7
Cpa.g.sc119.37 Carica papaya HOM05D007392 ORTHO05D009181 5.9e-10 68.2 111 48.6
BcaC01g03991 Brassica carinata HOM05D007392 ORTHO05D009181 1.7e-09 66.6 145 37.2
C03p46400 Brassica napus HOM05D007392 ORTHO05D009181 3.8e-09 65.5 145 38.6
C03p46430 Brassica napus HOM05D007392 ORTHO05D009181 8.5e-09 64.3 106 42.5
HPP92_015638 Vanilla planifolia HOM05D007392 ORTHO05D009181 1.1e-08 63.9 138 37.0
Migut.N00543 Erythranthe guttata HOM05D007392 ORTHO05D009181 2.5e-08 62.8 136 36.0
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 7.2e-08 61.2 144 34.7
AT1G55475 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 2.7e-07 59.3 83 48.2
Carub.0001s4396 Capsella rubella HOM05D007392 ORTHO05D009181 2.7e-07 59.3 83 49.4
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 4.7e-07 58.5 144 34.0
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 8.0e-07 57.8 133 33.8
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 8.0e-07 57.8 154 33.1
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 1.8e-06 56.6 151 31.8
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.3e-06 56.2 131 33.6
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 2.3e-06 56.2 150 33.3
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.3e-06 56.2 149 32.9
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 2.3e-06 56.2 144 31.9
Aa31LG10G780 Aethionema arabicum HOM05D007392 ORTHO05D009181 3.0e-06 55.8 114 39.5
HPP92_026624 Vanilla planifolia HOM05D007392 ORTHO05D009181 3.0e-06 55.8 139 39.6
C03p92800 Brassica napus HOM05D007392 ORTHO05D009181 4.0e-06 55.5 60 53.3
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 4.0e-06 55.5 151 31.8
HPP92_024836 Vanilla planifolia HOM05D007392 ORTHO05D009181 6.7e-06 54.7 140 37.9
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 6.7e-06 54.7 155 32.3
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 8.8e-06 54.3 141 33.3
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 8.8e-06 54.3 142 33.1


User provided reference genes

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