Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia00546 Actinidia chinensis HOM05D006691 ORTHO05D007620 1.9e-37 158.7 80 100.0
TWI79G1416 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 2.7e-20 101.7 90 61.1
Dinv23490 Davidia involucrata HOM05D006691 ORTHO05D007620 4.7e-20 100.9 93 64.5
TWI31G1476 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 6.1e-20 100.5 89 60.7
Thecc.02G080700 Theobroma cacao HOM05D006691 ORTHO05D007620 3.0e-19 98.2 85 63.5
QL11p045203 Quercus lobata HOM05D006691 ORTHO05D007620 3.3e-18 94.7 93 60.2
TAR628G0615 Trochodendron aralioides HOM05D006691 ORTHO05D007620 4.4e-18 94.4 92 57.6
Glyma.13G201100 Glycine max HOM05D006691 ORTHO05D007620 9.7e-18 93.2 91 59.3
Potri.009G119900 Populus trichocarpa HOM05D006691 ORTHO05D007620 1.3e-17 92.8 95 55.8
Dinv42040 Davidia involucrata HOM05D006691 ORTHO05D007620 1.7e-17 92.4 93 58.1
Sopen01g052090 Solanum pennellii HOM05D006691 ORTHO05D007620 2.8e-17 91.7 81 59.3
Duzib248G1522 Durio zibethinus HOM05D006691 ORTHO05D007620 4.8e-17 90.9 83 63.9
MD05G1061400 Malus domestica HOM05D006691 ORTHO05D007620 6.3e-17 90.5 93 54.8
Medtr8g037800 Medicago truncatula HOM05D006691 ORTHO05D007620 6.3e-17 90.5 92 56.5
Nitab4.5_0007454g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 6.3e-17 90.5 90 57.8
Solyc01g109895.1 Solanum lycopersicum HOM05D006691 ORTHO05D007620 6.3e-17 90.5 83 57.8
Nitab4.5_0013456g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 8.2e-17 90.1 93 59.1
CAN.G1544.5 Capsicum annuum HOM05D006691 ORTHO05D007620 1.1e-16 89.7 84 60.7
Nitab4.5_0003234g0120 Nicotiana tabacum HOM05D006691 ORTHO05D007620 1.1e-16 89.7 89 58.4
Peaxi162Scf00016g00429 Petunia axillaris HOM05D006691 ORTHO05D007620 1.1e-16 89.7 95 56.8
TPR.G1848 Trifolium pratense HOM05D006691 ORTHO05D007620 1.1e-16 89.7 92 55.4
CSS0036321 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 1.4e-16 89.4 87 58.6
Gohir.A03G196700 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.4e-16 89.4 81 61.7
Gorai.005G245800 Gossypium raimondii HOM05D006691 ORTHO05D007620 1.4e-16 89.4 81 61.7
Migut.B00211 Erythranthe guttata HOM05D006691 ORTHO05D007620 1.8e-16 89.0 87 56.3
GSVIVG01023821001 Vitis vinifera HOM05D006691 ORTHO05D007620 1.8e-16 89.0 96 54.2
COL.COLO4_25981 Corchorus olitorius HOM05D006691 ORTHO05D007620 2.4e-16 88.6 88 62.5
Phvul.011G210100 Phaseolus vulgaris HOM05D006691 ORTHO05D007620 3.1e-16 88.2 90 56.7
Psat4g192840 Pisum sativum HOM05D006691 ORTHO05D007620 3.1e-16 88.2 89 58.4
CSS0048821 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 5.3e-16 87.4 97 56.7
Ciclev10030122m.g Citrus clementina HOM05D006691 ORTHO05D007620 5.3e-16 87.4 90 56.7
Eucgr.I01291 Eucalyptus grandis HOM05D006691 ORTHO05D007620 5.3e-16 87.4 92 54.3
Lj1g0004010 Lotus japonicus HOM05D006691 ORTHO05D007620 5.3e-16 87.4 90 56.7
MD10G1069300 Malus domestica HOM05D006691 ORTHO05D007620 5.3e-16 87.4 93 55.9
Prupe.8G091200 Prunus persica HOM05D006691 ORTHO05D007620 5.3e-16 87.4 93 53.8
Gohir.D02G217900 Gossypium hirsutum HOM05D006691 ORTHO05D007620 7.0e-16 87.0 81 60.5
CiPaw.06G132900 Carya illinoinensis HOM05D006691 ORTHO05D007620 9.1e-16 86.7 93 55.9
Rhsim05G0071400 Rhododendron simsii HOM05D006691 ORTHO05D007620 9.1e-16 86.7 88 54.5
PGSC0003DMG400030948 Solanum tuberosum HOM05D006691 ORTHO05D007620 9.1e-16 86.7 82 56.1
Lalb_Chr01g0007961 Lupinus albus HOM05D006691 ORTHO05D007620 1.2e-15 86.3 92 54.3
FAN15G0999 Fragaria x ananassa HOM05D006691 ORTHO05D007620 2.0e-15 85.5 95 57.9
Manes.11G091700 Manihot esculenta HOM05D006691 ORTHO05D007620 2.0e-15 85.5 90 55.6
Nitab4.5_0001413g0050 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.0e-15 85.5 94 55.3
Gohir.D13G030800 Gossypium hirsutum HOM05D006691 ORTHO05D007620 2.6e-15 85.1 82 57.3
Gorai.013G035000 Gossypium raimondii HOM05D006691 ORTHO05D007620 2.6e-15 85.1 82 57.3
Duzib132G0715 Durio zibethinus HOM05D006691 ORTHO05D007620 4.5e-15 84.3 84 59.5
FAN27G2049 Fragaria x ananassa HOM05D006691 ORTHO05D007620 4.5e-15 84.3 95 57.9
Gohir.A13G032600 Gossypium hirsutum HOM05D006691 ORTHO05D007620 4.5e-15 84.3 82 57.3
Manes.04G087299 Manihot esculenta HOM05D006691 ORTHO05D007620 5.9e-15 84.0 91 54.9
Cc00_g15110 Coffea canephora HOM05D006691 ORTHO05D007620 7.7e-15 83.6 94 55.3
FvH4_2g09570 Fragaria vesca HOM05D006691 ORTHO05D007620 7.7e-15 83.6 95 55.8
FAN24G2625 Fragaria x ananassa HOM05D006691 ORTHO05D007620 7.7e-15 83.6 95 55.8
RcHm_v2.0_Chr6g0265861 Rosa chinensis HOM05D006691 ORTHO05D007620 7.7e-15 83.6 95 55.8
FAN20G2766 Fragaria x ananassa HOM05D006691 ORTHO05D007620 1.0e-14 83.2 95 55.8
Hma1.2p1_0066F.1_g036140 Hydrangea macrophylla HOM05D006691 ORTHO05D007620 2.9e-14 81.6 93 57.0
SalBow6G5689 Salvia bowleyana HOM05D006691 ORTHO05D007620 2.9e-14 81.6 91 51.6
arahy.Tifrunner.gnm1.ann1.43WB82 Arachis hypogaea HOM05D006691 ORTHO05D007620 5.0e-14 80.9 90 57.8
Aqoxy5G01556 Aquilegia oxysepala HOM05D006691 ORTHO05D007620 1.1e-13 79.7 93 51.6
CSS0004191 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 1.5e-13 79.3 80 57.5
Lj3g0013236 Lotus japonicus HOM05D006691 ORTHO05D007620 1.9e-13 79.0 88 53.4
CANSAT11G0932 Cannabis sativa HOM05D006691 ORTHO05D007620 5.5e-13 77.4 89 48.3
PSO675G5127 Papaver somniferum HOM05D006691 ORTHO05D007620 5.5e-13 77.4 101 51.5
Sed0023451 Sechium edule HOM05D006691 ORTHO05D007620 7.2e-13 77.0 97 53.6
PSO591G0314 Papaver somniferum HOM05D006691 ORTHO05D007620 1.6e-12 75.9 101 51.5
CsaV3_2G015000 Cucumis sativus L. HOM05D006691 ORTHO05D007620 2.1e-12 75.5 86 53.5
MELO3C023320.2 Cucumis melo HOM05D006691 ORTHO05D007620 3.6e-12 74.7 87 51.7
Peaxi162Scf00684g00234 Petunia axillaris HOM05D006691 ORTHO05D007620 4.7e-12 74.3 79 59.5
MBI16_g36843_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 1.0e-11 73.2 94 46.8
ClCG11G004170 Citrullus lanatus HOM05D006691 ORTHO05D007620 1.8e-11 72.4 82 53.7
THA.LOC104819621 Tarenaya hassleriana HOM05D006691 ORTHO05D007620 2.3e-11 72.0 88 47.7
PGR042G3893 Punica granatum HOM05D006691 ORTHO05D007620 3.0e-11 71.6 93 52.7
Hund06253 Selenicereus undatus HOM05D006691 ORTHO05D007620 4.0e-11 71.2 94 51.1
CiPaw.05G069100 Carya illinoinensis HOM05D006691 ORTHO05D007620 1.1e-10 69.7 58 63.8
HanXRQChr04g0127791 Helianthus annuus HOM05D006691 ORTHO05D007620 1.1e-10 69.7 89 50.6
Carub.0007s0568 Capsella rubella HOM05D006691 ORTHO05D007620 1.5e-10 69.3 83 49.4
AL3G52540 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 2.0e-10 68.9 79 50.6
DCAR_001560 Daucus carota HOM05D006691 ORTHO05D007620 2.0e-10 68.9 86 50.0
arahy.Tifrunner.gnm1.ann1.D742FH Arachis hypogaea HOM05D006691 ORTHO05D007620 2.6e-10 68.6 80 50.0
Glyma.12G235600 Glycine max HOM05D006691 ORTHO05D007620 2.6e-10 68.6 69 56.5
CiPaw.05G069400 Carya illinoinensis HOM05D006691 ORTHO05D007620 3.3e-10 68.2 54 64.8
AT2G16385 Arabidopsis thaliana HOM05D006691 ORTHO05D007620 4.4e-10 67.8 87 48.3
Lsat_1_v5_gn_7_91560 Lactuca sativa HOM05D006691 ORTHO05D007620 4.4e-10 67.8 90 51.1
CiPaw.05G069300 Carya illinoinensis HOM05D006691 ORTHO05D007620 7.5e-10 67.0 59 55.9
HanXRQChr16g0505401 Helianthus annuus HOM05D006691 ORTHO05D007620 1.3e-09 66.2 93 46.2
AL7G16600 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 3.7e-09 64.7 83 45.8
BcaNung00683 Brassica carinata HOM05D006691 ORTHO05D007620 2.4e-08 62.0 87 44.8
C01p04190 Brassica napus HOM05D006691 ORTHO05D007620 2.4e-08 62.0 87 44.8
BraA01t00375Z Brassica rapa HOM05D006691 ORTHO05D007620 2.4e-08 62.0 87 44.8
Carub.0003s3015 Capsella rubella HOM05D006691 ORTHO05D007620 2.4e-08 62.0 83 49.4
A01p03880 Brassica napus HOM05D006691 ORTHO05D007620 3.1e-08 61.6 87 43.7
CARHR242800 Cardamine hirsuta HOM05D006691 ORTHO05D007620 5.3e-08 60.8 88 44.3
ATR0585G050 Amborella trichopoda HOM05D006691 ORTHO05D007620 7.0e-08 60.5 83 43.4
Thhalv10026702m.g Eutrema salsugineum HOM05D006691 ORTHO05D007620 9.1e-08 60.1 87 43.7
DCAR_004781 Daucus carota HOM05D006691 ORTHO05D007620 1.2e-07 59.7 34 76.5
unitig_46.g18506 Utricularia gibba HOM05D055258 ORTHO05D007620 1.2e-07 59.7 71 50.7
unitig_47.g30752 Utricularia gibba HOM05D055258 ORTHO05D007620 1.2e-07 59.7 71 50.7
MBI10_g00752_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 2.0e-07 58.9 33 78.8
BcaNung04921 Brassica carinata HOM05D006691 ORTHO05D007620 3.5e-07 58.2 88 44.3
Eucgr.G01694 Eucalyptus grandis HOM05D006691 ORTHO05D007620 4.5e-07 57.8 103 36.9
BolC1t00407H Brassica oleracea HOM05D006691 ORTHO05D007620 1.0e-06 56.6 92 42.4
A03p63030 Brassica napus HOM05D006691 ORTHO05D007620 1.3e-06 56.2 85 40.0
BraA03t15377Z Brassica rapa HOM05D006691 ORTHO05D007620 1.3e-06 56.2 85 40.0
Glyma.06G010000 Glycine max HOM05D006691 ORTHO05D007620 2.9e-06 55.1 82 43.9
Sp7g32390 Schrenkiella parvula HOM05D006691 ORTHO05D007620 2.9e-06 55.1 68 45.6
C07p60660 Brassica napus HOM05D006691 ORTHO05D007620 5.0e-06 54.3 85 37.6
BolC7t46496H Brassica oleracea HOM05D006691 ORTHO05D007620 5.0e-06 54.3 85 37.6
Os11g0323860 Oryza sativa ssp. japonica HOM05D035858 ORTHO05D007620 5.0e-06 54.3 79 46.8
Os11g0412484 Oryza sativa ssp. japonica HOM05D035858 ORTHO05D007620 5.0e-06 54.3 79 46.8
arahy.Tifrunner.gnm1.ann1.GKZX65 Arachis hypogaea HOM05D006691 ORTHO05D007620 6.5e-06 53.9 35 65.7
CDE06G1180 Ceratophyllum demersum HOM05D006691 ORTHO05D007620 8.5e-06 53.5 33 69.7


User provided reference genes

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