Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 0.0e+00 1504.2 747 100.0
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 0.0e+00 1151.0 730 81.4
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 4.7e-247 858.2 759 63.0
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 1.2e-199 700.7 761 53.0
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 8.1e-191 671.4 763 52.6
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 6.2e-151 538.9 804 43.3
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 2.4e-142 510.4 511 56.4
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 6.9e-134 482.3 761 41.4
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 1.3e-132 478.0 764 43.2
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 1.1e-128 464.9 775 40.6
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 3.3e-128 463.4 769 41.6
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 4.4e-128 463.0 763 40.0
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 7.0e-126 455.7 760 40.0
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 5.0e-124 449.5 760 42.6
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 4.2e-123 446.4 764 40.1
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 2.1e-122 444.1 764 39.5
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 6.5e-116 422.5 761 38.8
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 4.7e-114 416.4 762 38.5
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 1.8e-113 414.5 765 37.4
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 1.2e-109 401.7 769 37.1
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 1.9e-107 394.4 769 37.1
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 4.2e-107 393.3 766 36.8
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 2.0e-104 384.4 741 38.6
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 8.3e-103 379.0 765 35.7
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.1e-102 378.6 803 35.2
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 4.5e-101 373.2 773 37.5
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.1e-99 368.6 755 36.8
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 4.7e-98 363.2 791 35.9
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 4.1e-94 350.1 818 32.0
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.6e-93 348.2 792 34.3
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 4.5e-93 346.7 785 34.4
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.5e-91 341.7 787 35.1
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 7.3e-91 339.3 774 35.4
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 1.2e-90 338.6 772 34.3
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.2e-90 338.6 767 34.4
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 1.0e-89 335.5 392 49.2
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 1.5e-88 331.6 767 36.0
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 2.0e-88 331.3 771 33.9
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 2.9e-87 327.4 768 35.4
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 1.9e-86 324.7 763 34.5
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 3.5e-85 320.5 741 34.7
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 3.0e-84 317.4 756 34.4
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 3.9e-84 317.0 765 34.4
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 2.0e-80 304.7 772 34.5
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 2.6e-80 304.3 477 40.7
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.7e-79 301.6 754 34.1
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.7e-79 300.4 755 34.2
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 5.4e-78 296.6 754 34.0
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 7.1e-78 296.2 809 32.1
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 1.0e-76 292.4 767 33.2
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 2.8e-74 284.3 769 32.0
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 5.2e-73 280.0 765 31.6
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 7.6e-72 276.2 760 31.6
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 2.2e-71 274.6 771 32.9
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 6.4e-71 273.1 768 30.2
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.9e-70 271.6 769 31.7
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 9.2e-70 269.2 774 29.5
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 1.6e-69 268.5 767 31.7
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 2.7e-69 267.7 769 31.2
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 1.3e-68 265.4 777 34.0
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 2.3e-68 264.6 785 31.2
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 1.1e-67 262.3 768 32.7
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 1.5e-67 261.9 781 31.5
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 8.9e-65 252.7 784 29.8
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 3.4e-64 250.8 785 33.1
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 7.6e-64 249.6 746 30.8
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.4e-62 245.4 396 40.2
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 1.9e-62 245.0 775 30.7
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 7.1e-62 243.0 768 29.8
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 1.6e-61 241.9 469 37.7
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 3.9e-60 237.3 752 32.3
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.9e-59 235.0 766 30.2
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 9.6e-59 232.6 767 31.7
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 4.0e-57 227.3 411 38.4
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 6.9e-57 226.5 619 31.7
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 1.2e-56 225.7 572 30.6
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 2.6e-56 224.6 414 38.4
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 4.4e-56 223.8 768 30.1
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 5.8e-56 223.4 745 29.4
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 9.9e-56 222.6 409 38.4
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 3.2e-54 217.6 485 33.2
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.9e-51 208.4 433 34.2
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 3.6e-50 204.1 493 33.1
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 1.4e-49 202.2 641 30.7
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 4.5e-48 197.2 279 40.9
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 8.4e-47 193.0 367 36.8
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 3.5e-45 187.6 539 31.0
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.9e-43 181.8 506 31.2
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.1e-41 174.5 249 42.2
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 1.2e-40 172.6 602 28.7
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 6.5e-39 166.8 550 31.8
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 3.2e-38 164.5 252 40.9
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 5.5e-38 163.7 363 33.6
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 9.3e-38 162.9 363 33.3
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 6.2e-34 150.2 411 31.4
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 2.2e-31 141.7 247 37.7
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.4e-30 139.0 423 33.3
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 2.5e-30 138.3 359 34.0
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 9.3e-30 136.3 474 30.2
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 3.0e-28 131.3 362 32.9
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 1.1e-27 129.4 352 32.4
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 4.3e-27 127.5 230 37.4
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 6.3e-26 123.6 363 33.3
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 3.4e-24 117.9 352 32.7
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 5.9e-24 117.1 356 32.9
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 1.3e-23 115.9 376 31.6
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.2e-23 115.2 93 57.0
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 3.8e-23 114.4 393 28.5
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 2.5e-22 111.7 382 30.6
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 9.4e-22 109.8 287 32.8
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 9.4e-22 109.8 287 32.8
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.2e-21 109.4 246 32.5
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 2.1e-21 108.6 204 39.2
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 3.6e-21 107.8 354 31.9
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 3.6e-21 107.8 354 31.9
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 7.9e-21 106.7 354 31.4
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 1.0e-20 106.3 220 35.0
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 1.4e-20 105.9 354 33.1
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.4e-20 105.9 195 33.3
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 1.8e-20 105.5 356 31.2
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 1.7e-18 99.0 359 29.5
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 1.7e-18 99.0 359 29.5
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 1.7e-18 99.0 359 29.5
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 1.4e-14 85.9 385 26.8
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.8e-12 79.0 196 28.6
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 2.3e-12 78.6 89 42.7
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 4.4e-11 74.3 73 56.2
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 2.8e-10 71.6 186 31.7
Zm00001eb342970 Zea mays HOM05D024721 ORTHO05D025980 1.1e-09 69.7 166 31.3
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 1.8e-09 68.9 295 24.1
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 2.4e-09 68.6 282 30.5
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 2.4e-09 68.6 282 30.5
Os05g0552100 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 5.3e-09 67.4 342 25.7
ATR0568G035 Amborella trichopoda HOM05D007001 ORTHO05D005587 9.1e-09 66.6 229 28.8
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 9.1e-09 66.6 236 28.0
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 3.5e-08 64.7 364 23.4
HPP92_020281 Vanilla planifolia HOM05D007001 ORTHO05D005587 4.5e-08 64.3 73 39.7
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 2.2e-07 62.0 231 25.5
SEGI_13389 Sequoiadendron giganteum HOM05D007001 ORTHO05D005587 6.5e-07 60.5 118 33.9


User provided reference genes

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