Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 8.9e-50 199.9 97 100.0
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 2.5e-20 102.1 94 56.4
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 4.8e-19 97.8 98 53.1
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 6.2e-19 97.4 122 48.4
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 8.4e-16 87.0 88 47.7
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 2.1e-14 82.4 95 43.2
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 2.7e-14 82.0 91 47.3
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 7.9e-14 80.5 94 44.7
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 7.9e-14 80.5 88 48.9
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 1.8e-13 79.3 91 46.2
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 3.0e-13 78.6 91 44.0
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 5.1e-13 77.8 95 51.6
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 6.7e-13 77.4 97 45.4
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 8.7e-13 77.0 95 45.3
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 1.1e-12 76.6 87 47.1
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.5e-12 76.3 88 51.1
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 2.5e-12 75.5 94 41.5
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 3.3e-12 75.1 99 43.4
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 3.3e-12 75.1 81 45.7
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 3.3e-12 75.1 81 45.7
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 5.7e-12 74.3 95 41.1
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 5.7e-12 74.3 95 40.0
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 9.7e-12 73.6 95 43.2
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.3e-11 73.2 93 44.1
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 1.3e-11 73.2 96 39.6
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 1.6e-11 72.8 93 37.6
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.6e-11 72.8 91 41.8
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 2.2e-11 72.4 88 44.3
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.8e-11 72.0 91 48.4
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 8.2e-11 70.5 85 43.5
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 8.2e-11 70.5 83 44.6
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 8.2e-11 70.5 95 40.0
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 1.1e-10 70.1 91 44.0
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 2.4e-10 68.9 73 45.2
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 2.4e-10 68.9 95 42.1
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 3.1e-10 68.6 96 43.8
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 3.1e-10 68.6 95 40.0
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 3.1e-10 68.6 95 38.9
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 3.1e-10 68.6 93 39.8
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 4.1e-10 68.2 89 39.3
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 4.1e-10 68.2 89 39.3
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 4.1e-10 68.2 96 37.5
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 5.3e-10 67.8 91 37.4
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 6.9e-10 67.4 97 37.1
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 6.9e-10 67.4 94 40.4
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 6.9e-10 67.4 94 42.6
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 9.0e-10 67.0 93 37.6
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 9.0e-10 67.0 97 36.1
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 9.0e-10 67.0 91 40.7
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 9.0e-10 67.0 100 40.0
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 1.2e-09 66.6 95 36.8
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 1.5e-09 66.2 94 43.6
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 1.5e-09 66.2 94 38.3
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 1.5e-09 66.2 91 39.6
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 2.0e-09 65.9 98 39.8
vmacro17500 Vaccinium macrocarpon HOM05D017364 ORTHO05D002252 2.6e-09 65.5 89 46.1
Manes.15G164600 Manihot esculenta HOM05D007227 ORTHO05D002252 3.4e-09 65.1 92 37.0
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 3.4e-09 65.1 95 38.9
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 3.4e-09 65.1 92 39.1
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 4.5e-09 64.7 83 43.4
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 5.9e-09 64.3 88 38.6
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 5.9e-09 64.3 87 37.9
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 5.9e-09 64.3 94 37.2
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 7.6e-09 63.9 91 39.6
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.0e-08 63.5 91 36.3
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 1.0e-08 63.5 92 40.2
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 1.0e-08 63.5 100 38.0
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 1.3e-08 63.2 88 35.2
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 1.3e-08 63.2 86 36.0
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 1.3e-08 63.2 94 40.4
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.3e-08 63.2 95 37.9
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.3e-08 63.2 99 38.4
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 1.7e-08 62.8 91 39.6
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 2.2e-08 62.4 70 41.4
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.2e-08 62.4 95 41.1
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.9e-08 62.0 91 35.2
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 2.9e-08 62.0 93 35.5
MELO3C020982.2 Cucumis melo HOM05D007227 ORTHO05D002252 3.8e-08 61.6 92 38.0
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 3.8e-08 61.6 89 36.0
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 5.0e-08 61.2 91 45.1
Cfa005014 Carpinus fangiana HOM05D007556 ORTHO05D002252 5.0e-08 61.2 94 41.5
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 5.0e-08 61.2 87 40.2
vmacro02121 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 5.0e-08 61.2 94 40.4
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 6.5e-08 60.8 91 40.7
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 6.5e-08 60.8 90 36.7
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 8.5e-08 60.5 94 41.5
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 1.1e-07 60.1 87 37.9
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 1.1e-07 60.1 83 37.3
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 1.4e-07 59.7 93 34.4
Cfa005016 Carpinus fangiana HOM05D007556 ORTHO05D002252 1.4e-07 59.7 94 40.4
Migut.N01231 Erythranthe guttata HOM05D007227 ORTHO05D002252 1.4e-07 59.7 91 39.6
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 1.4e-07 59.7 94 37.2
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 1.4e-07 59.7 89 42.7
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 1.9e-07 59.3 84 40.5
Cc07_g14570 Coffea canephora HOM05D007227 ORTHO05D002252 2.5e-07 58.9 95 32.6
Aqoxy5G01653 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 3.2e-07 58.5 113 35.4
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 3.2e-07 58.5 67 44.8
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 3.2e-07 58.5 86 37.2
HanXRQChr16g0524731 Helianthus annuus HOM05D017364 ORTHO05D002252 3.2e-07 58.5 91 39.6
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 3.2e-07 58.5 87 34.5
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 4.2e-07 58.2 97 36.1
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 4.2e-07 58.2 77 37.7
HanXRQChr01g0007701 Helianthus annuus HOM05D017364 ORTHO05D002252 5.5e-07 57.8 91 39.6
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 5.5e-07 57.8 92 38.0
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 5.5e-07 57.8 95 38.9
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 5.5e-07 57.8 87 40.2
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 5.5e-07 57.8 95 38.9
Sopen01g051670 Solanum pennellii HOM05D007227 ORTHO05D002252 5.5e-07 57.8 93 37.6
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 7.2e-07 57.4 97 38.1
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 7.2e-07 57.4 86 40.7
Nitab4.5_0000295g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 9.3e-07 57.0 83 39.8
Nitab4.5_0002892g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 9.3e-07 57.0 80 42.5
Rhsim11G0175600 Rhododendron simsii HOM05D007556 ORTHO05D002252 9.3e-07 57.0 94 38.3
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 1.2e-06 56.6 89 36.0
CSS0038929 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 1.6e-06 56.2 63 46.0
Rhsim11G0175400 Rhododendron simsii HOM05D007556 ORTHO05D002252 1.6e-06 56.2 94 38.3
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 2.1e-06 55.8 79 39.2
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 2.1e-06 55.8 90 37.8
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 2.7e-06 55.5 91 33.0
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 2.7e-06 55.5 91 34.1
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 2.7e-06 55.5 86 38.4
BcaB07g33682 Brassica carinata HOM05D009461 ORTHO05D002252 3.6e-06 55.1 90 36.7
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 3.6e-06 55.1 90 36.7
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 3.6e-06 55.1 90 36.7
CiPaw.06G136500 Carya illinoinensis HOM05D007556 ORTHO05D002252 3.6e-06 55.1 93 35.5
Thhalv10011902m.g Eutrema salsugineum HOM05D009461 ORTHO05D002252 4.6e-06 54.7 90 36.7
HanXRQChr13g0410611 Helianthus annuus HOM05D017364 ORTHO05D002252 4.6e-06 54.7 90 36.7
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 4.6e-06 54.7 78 33.3
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 4.6e-06 54.7 92 38.0
vmacro02123 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 4.6e-06 54.7 73 39.7
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 6.1e-06 54.3 90 35.6
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 6.1e-06 54.3 90 35.6
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 6.1e-06 54.3 90 35.6
Nitab4.5_0000618g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 6.1e-06 54.3 84 40.5
Oeu014344.1 Olea europaea HOM05D007556 ORTHO05D002252 6.1e-06 54.3 63 38.1
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 6.1e-06 54.3 90 38.9
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 7.9e-06 53.9 89 32.6
Thecc.02G086800 Theobroma cacao HOM05D007556 ORTHO05D002252 7.9e-06 53.9 81 46.9


User provided reference genes

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