Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 2.8e-208 728.4 376 100.0
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 3.9e-93 345.9 277 61.0
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 4.8e-91 339.0 288 58.7
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 5.8e-89 332.0 288 59.0
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.2e-88 330.1 350 51.4
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 2.5e-87 326.6 279 58.4
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.2e-87 326.2 312 54.2
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 3.2e-87 326.2 279 58.1
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 4.2e-87 325.9 299 56.2
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 9.3e-87 324.7 302 57.3
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 2.7e-86 323.2 278 57.9
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.6e-86 322.4 280 57.9
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 7.9e-86 321.6 300 58.3
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 7.9e-86 321.6 294 56.1
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.0e-85 321.2 300 54.7
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 1.8e-85 320.5 290 56.9
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.9e-85 319.3 290 56.6
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 6.7e-85 318.5 315 52.7
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 8.7e-85 318.2 277 59.9
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 1.5e-84 317.4 290 55.2
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.9e-84 317.0 276 56.2
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.9e-84 317.0 280 56.1
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.9e-84 317.0 292 56.5
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 1.9e-84 317.0 283 56.2
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.5e-84 316.6 276 57.6
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.5e-84 316.6 276 56.9
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 3.3e-84 316.2 288 56.9
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 4.3e-84 315.8 326 52.5
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 5.7e-84 315.5 292 54.1
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 7.4e-84 315.1 296 55.7
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 9.6e-84 314.7 294 53.7
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.6e-83 313.9 289 54.7
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 2.1e-83 313.5 280 54.3
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 2.8e-83 313.2 291 53.6
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.7e-83 312.8 278 55.0
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 3.7e-83 312.8 278 56.5
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 3.7e-83 312.8 278 56.5
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 4.8e-83 312.4 280 53.2
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 6.3e-83 312.0 276 54.0
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 6.3e-83 312.0 289 54.0
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 1.1e-82 311.2 276 57.2
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.4e-82 310.8 278 54.3
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 1.4e-82 310.8 285 54.4
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.8e-82 310.5 292 52.7
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 2.4e-82 310.1 282 56.4
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 2.4e-82 310.1 291 54.0
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 3.1e-82 309.7 278 56.5
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 4.1e-82 309.3 288 56.2
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.1e-82 309.3 287 54.0
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.1e-82 309.3 299 52.8
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 4.1e-82 309.3 286 54.2
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 5.3e-82 308.9 291 55.7
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 9.0e-82 308.1 285 54.7
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-81 307.8 299 53.2
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.2e-81 307.8 299 53.2
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 2.0e-81 307.0 291 54.6
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 4.5e-81 305.8 287 55.7
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 4.5e-81 305.8 291 54.6
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.9e-81 305.4 299 52.8
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.0e-80 304.7 292 53.1
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.0e-80 304.7 277 54.2
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 1.0e-80 304.7 280 55.4
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 1.3e-80 304.3 291 54.0
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 1.3e-80 304.3 291 54.6
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.3e-80 304.3 313 52.7
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.7e-80 303.9 292 52.7
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.7e-80 303.9 300 52.7
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.7e-80 303.9 291 53.3
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 2.2e-80 303.5 300 52.3
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 2.2e-80 303.5 291 54.6
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 2.2e-80 303.5 278 54.3
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 2.2e-80 303.5 290 55.2
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.9e-80 303.1 278 54.3
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.9e-80 303.1 296 55.1
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 5.0e-80 302.4 276 56.2
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 5.0e-80 302.4 278 54.3
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 6.5e-80 302.0 278 55.0
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 8.4e-80 301.6 283 55.1
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 8.4e-80 301.6 278 54.3
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 8.4e-80 301.6 276 56.2
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.1e-79 301.2 288 54.5
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 1.1e-79 301.2 291 53.3
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.4e-79 300.8 276 55.8
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.4e-79 300.8 276 56.2
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 1.4e-79 300.8 286 53.5
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.9e-79 300.4 291 53.6
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.9e-79 300.4 291 54.0
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 2.5e-79 300.1 333 50.5
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 2.5e-79 300.1 280 52.1
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 4.2e-79 299.3 283 54.8
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 4.2e-79 299.3 276 55.8
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 4.2e-79 299.3 278 52.5
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 4.2e-79 299.3 266 56.0
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 5.5e-79 298.9 293 53.9
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 5.5e-79 298.9 276 56.2
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 5.5e-79 298.9 276 54.0
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 7.2e-79 298.5 278 54.3
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 7.2e-79 298.5 285 54.0
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 7.2e-79 298.5 300 52.7
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.2e-78 297.7 291 54.0
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 1.2e-78 297.7 291 52.9
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.6e-78 297.4 298 51.3
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.7e-78 296.6 285 55.1
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 2.7e-78 296.6 279 54.8
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 6.1e-78 295.4 290 54.5
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 7.9e-78 295.0 285 54.7
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 7.9e-78 295.0 294 52.0
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.0e-77 294.7 274 55.5
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 1.0e-77 294.7 292 53.1
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 1.3e-77 294.3 300 50.3
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 2.3e-77 293.5 300 51.7
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 2.3e-77 293.5 280 53.9
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 2.3e-77 293.5 291 52.6
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 3.9e-77 292.7 293 52.9
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 5.1e-77 292.4 289 52.9
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 8.7e-77 291.6 241 59.8
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 8.7e-77 291.6 303 49.2
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 1.1e-76 291.2 280 54.6
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.9e-76 290.4 278 52.5
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.3e-76 289.3 314 48.1
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 7.4e-76 288.5 288 51.4
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 1.6e-75 287.3 321 47.4
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 2.2e-75 287.0 277 52.3
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 2.2e-75 287.0 314 48.1
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 8.2e-75 285.0 303 50.2
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 1.4e-74 284.3 305 48.2
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.8e-74 283.9 313 48.6
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 2.4e-74 283.5 382 46.3
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 1.2e-73 281.2 250 54.0
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.5e-73 280.8 280 49.6
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.1e-71 274.6 241 55.6
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 1.8e-69 267.3 267 47.6
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 5.1e-69 265.8 264 50.8
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 4.1e-66 256.1 243 54.7
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.4e-65 253.1 305 45.9
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 5.9e-65 252.3 280 48.6
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 6.5e-64 248.8 232 50.4
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 9.4e-63 245.0 290 45.5
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 1.2e-62 244.6 290 45.5
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.3e-60 236.5 212 54.7
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 2.0e-57 227.3 260 47.3
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 3.5e-57 226.5 253 46.6
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 3.2e-55 219.9 221 51.6
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 7.2e-55 218.8 252 45.6
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 5.7e-52 209.1 216 49.5
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 2.0e-44 184.1 167 58.1
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 3.4e-44 183.3 290 36.9
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 2.2e-43 180.6 190 48.9
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 3.7e-43 179.9 295 40.0
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 6.3e-43 179.1 200 47.5
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 1.1e-42 178.3 150 58.0
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 4.5e-41 172.9 167 53.9
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 4.5e-41 172.9 184 48.9
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.0e-37 161.8 315 35.9
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 1.3e-35 154.8 291 32.0
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 3.1e-34 150.2 129 57.4
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 3.5e-33 146.7 135 57.8
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 1.4e-29 134.8 258 32.6
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 1.1e-26 125.2 294 29.9
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 4.0e-21 106.7 303 26.7
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 1.5e-20 104.8 313 28.8
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 2.0e-17 94.4 112 41.1
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.3e-15 87.0 76 55.3
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 3.6e-14 83.6 106 46.2
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 3.6e-14 83.6 119 43.7
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 2.7e-09 67.4 58 53.4


User provided reference genes

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