Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 3.7e-51 204.5 99 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1844 Anthoceros agrestis HOM05D053501 ORTHO05D005536 1.4e-26 122.9 102 57.8
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 4.9e-19 97.8 92 51.1
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 4.1e-18 94.7 79 53.2
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 9.2e-18 93.6 80 55.0
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.6e-17 92.8 93 51.6
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.6e-17 92.8 93 51.6
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 6.0e-17 90.9 87 47.1
Mapoly0011s0061 Marchantia polymorpha HOM05D004945 ORTHO05D005536 2.5e-15 85.5 92 45.7
AagrBONN_evm.TU.Sc2ySwM_344.1841 Anthoceros agrestis HOM05D053501 ORTHO05D005536 7.3e-15 84.0 68 57.4
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 5.2e-13 77.8 82 45.1
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 6.8e-13 77.4 82 45.1
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.2e-11 72.4 99 39.4
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.7e-11 71.6 99 37.4
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 3.7e-11 71.6 99 37.4
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 4.9e-11 71.2 99 39.4
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.9e-11 71.2 99 37.4
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 4.9e-11 71.2 82 42.7
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 4.9e-11 71.2 82 42.7
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 8.3e-11 70.5 99 38.4
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.1e-10 70.1 82 41.5
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.1e-10 70.1 99 38.4
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 1.1e-10 70.1 82 41.5
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 1.1e-10 70.1 89 36.0
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 1.4e-10 69.7 82 42.7
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 1.4e-10 69.7 82 42.7
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 3.2e-10 68.6 83 42.2
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 1.2e-09 66.6 90 40.0
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 1.6e-09 66.2 91 35.2
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 1.6e-09 66.2 99 39.4
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 2.1e-09 65.9 82 39.0
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 2.1e-09 65.9 82 39.0
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 3.5e-09 65.1 83 38.6
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 4.6e-09 64.7 82 39.0
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 4.6e-09 64.7 82 39.0
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 4.6e-09 64.7 82 39.0
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 4.6e-09 64.7 82 39.0
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 4.6e-09 64.7 82 37.8
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 6.0e-09 64.3 82 37.8
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 6.0e-09 64.3 82 39.0
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 6.0e-09 64.3 70 40.0
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 6.0e-09 64.3 82 39.0
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 6.0e-09 64.3 81 39.5
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 7.8e-09 63.9 82 40.2
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 7.8e-09 63.9 82 39.0
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 1.0e-08 63.5 82 37.8
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 1.0e-08 63.5 82 39.0
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 1.0e-08 63.5 82 39.0
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 1.3e-08 63.2 82 36.6
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 1.3e-08 63.2 81 38.3
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 1.7e-08 62.8 91 35.2
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 1.7e-08 62.8 72 40.3
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 1.7e-08 62.8 82 36.6
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 2.3e-08 62.4 82 37.8
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 2.3e-08 62.4 82 37.8
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 3.0e-08 62.0 83 37.3
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 3.0e-08 62.0 82 37.8
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 3.0e-08 62.0 82 37.8
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 3.9e-08 61.6 83 36.1
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 3.9e-08 61.6 82 37.8
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 5.1e-08 61.2 82 37.8
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 6.6e-08 60.8 82 35.4
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.6e-08 60.5 83 37.3
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 8.6e-08 60.5 83 37.3
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 1.1e-07 60.1 82 35.4
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 1.1e-07 60.1 82 36.6
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.5e-07 59.7 82 37.8
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 1.5e-07 59.7 74 39.2
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 1.5e-07 59.7 83 36.1
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 1.9e-07 59.3 83 34.9
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 1.9e-07 59.3 82 37.8
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.9e-07 59.3 83 37.3
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.9e-07 59.3 82 35.4
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 2.5e-07 58.9 99 33.3
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 2.5e-07 58.9 81 35.8
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.3e-07 58.5 83 36.1
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 3.3e-07 58.5 74 37.8
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 3.3e-07 58.5 83 34.9
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 4.3e-07 58.2 83 34.9
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.3e-07 58.2 83 36.1
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.3e-07 58.2 83 36.1
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.3e-07 58.2 83 36.1
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.3e-07 58.2 83 36.1
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 4.3e-07 58.2 83 38.6
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 5.6e-07 57.8 82 36.6
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 5.6e-07 57.8 70 38.6
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 5.6e-07 57.8 80 36.2
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 5.6e-07 57.8 83 38.6
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 7.3e-07 57.4 72 38.9
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 7.3e-07 57.4 83 36.1
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 9.5e-07 57.0 82 32.9
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 9.5e-07 57.0 85 31.8
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 1.2e-06 56.6 69 40.6
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 1.6e-06 56.2 82 36.6
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 2.1e-06 55.8 80 36.2
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 2.8e-06 55.5 69 39.1
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 2.8e-06 55.5 69 39.1
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 2.8e-06 55.5 74 36.5
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 2.8e-06 55.5 82 35.4
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.6e-06 55.1 82 35.4
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 6.2e-06 54.3 82 37.8
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 6.2e-06 54.3 83 34.9


User provided reference genes

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