Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 7.3e-181 637.1 324 100.0
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 2.0e-82 310.1 315 53.7
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.9e-75 287.0 326 51.5
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.2e-68 263.5 323 48.3
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 3.5e-66 256.1 315 43.8
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 8.6e-65 251.5 313 43.8
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 4.3e-64 249.2 315 43.8
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 1.2e-63 247.7 313 41.9
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 1.2e-63 247.7 313 41.9
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 2.8e-63 246.5 313 42.2
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 6.2e-63 245.4 319 41.1
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 3.1e-62 243.0 316 40.5
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 4.0e-62 242.7 315 41.3
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 9.9e-61 238.0 314 43.0
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 9.9e-61 238.0 317 39.7
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 4.9e-60 235.7 313 41.2
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 6.4e-60 235.3 319 39.5
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.1e-59 234.6 317 41.6
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 1.1e-59 234.6 332 39.2
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 2.4e-59 233.4 316 40.2
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 3.2e-59 233.0 317 40.1
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 3.2e-59 233.0 317 41.0
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 3.2e-59 233.0 315 40.3
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.2e-59 232.6 323 37.8
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 9.3e-59 231.5 319 38.9
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 1.6e-58 230.7 313 39.0
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 2.1e-58 230.3 314 39.8
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 2.1e-58 230.3 316 39.9
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.7e-58 229.9 317 41.0
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 2.7e-58 229.9 319 38.6
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 6.0e-58 228.8 320 39.7
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 6.0e-58 228.8 313 39.3
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 6.0e-58 228.8 315 40.3
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 6.0e-58 228.8 320 38.8
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 7.8e-58 228.4 319 37.9
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 7.8e-58 228.4 313 40.3
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 1.3e-57 227.6 316 39.6
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 1.3e-57 227.6 315 40.0
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 1.7e-57 227.3 313 39.3
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 3.0e-57 226.5 324 39.8
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 3.0e-57 226.5 327 38.8
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 3.9e-57 226.1 319 38.6
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 3.9e-57 226.1 313 38.3
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 6.6e-57 225.3 313 39.6
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 8.7e-57 224.9 313 39.0
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 1.1e-56 224.6 313 38.7
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 1.9e-56 223.8 313 39.0
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 1.9e-56 223.8 316 39.6
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.9e-56 223.8 316 39.6
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 1.9e-56 223.8 314 38.2
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 2.5e-56 223.4 313 37.7
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 4.3e-56 222.6 315 38.4
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 4.3e-56 222.6 324 37.3
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 5.6e-56 222.2 313 38.3
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 7.3e-56 221.9 315 38.4
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 1.3e-55 221.1 313 39.3
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 1.3e-55 221.1 319 39.8
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 1.3e-55 221.1 321 39.9
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 1.3e-55 221.1 327 38.5
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 2.1e-55 220.3 317 39.7
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 2.1e-55 220.3 313 37.4
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 2.8e-55 219.9 318 37.4
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 2.8e-55 219.9 313 39.0
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 2.8e-55 219.9 316 38.9
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 4.8e-55 219.2 315 38.7
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 4.8e-55 219.2 322 37.6
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 6.2e-55 218.8 313 38.7
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 1.4e-54 217.6 319 37.6
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 1.4e-54 217.6 319 37.6
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 1.4e-54 217.6 316 38.3
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 3.1e-54 216.5 319 36.1
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 3.1e-54 216.5 316 38.6
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 3.1e-54 216.5 313 37.1
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 4.0e-54 216.1 319 37.0
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 4.0e-54 216.1 315 39.7
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 1.5e-53 214.2 315 37.8
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 1.5e-53 214.2 319 36.7
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 3.4e-53 213.0 313 37.7
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 4.4e-53 212.6 319 36.1
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 4.4e-53 212.6 313 38.0
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 7.6e-53 211.8 315 36.2
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 1.7e-52 210.7 316 37.0
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 6.4e-52 208.8 315 38.7
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 1.1e-51 208.0 319 35.7
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 3.2e-51 206.5 318 40.6
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 5.4e-51 205.7 315 39.0
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 9.3e-51 204.9 315 38.4
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 9.3e-51 204.9 313 41.5
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 2.7e-50 203.4 315 38.4
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 3.5e-50 203.0 317 38.8
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 6.0e-50 202.2 313 37.4
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 6.0e-50 202.2 313 37.4
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 6.0e-50 202.2 315 39.0
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 6.0e-50 202.2 313 38.7
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 6.0e-50 202.2 313 38.7
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 7.8e-50 201.8 322 35.7
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 1.3e-49 201.1 313 38.3
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 1.3e-49 201.1 321 36.1
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 2.3e-49 200.3 320 40.3
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 3.9e-49 199.5 313 38.0
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 3.9e-49 199.5 313 38.0
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 3.3e-48 196.4 324 35.8
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 4.5e-45 186.0 315 36.5
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 1.1e-40 171.4 342 35.7
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 2.1e-39 167.2 266 37.6
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.4e-38 163.7 254 41.7
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.3e-36 157.9 317 32.2
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 3.5e-34 149.8 452 28.1
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 4.8e-31 139.4 304 30.6
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.1e-30 138.3 169 40.2
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 6.5e-28 129.0 178 41.0
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 7.1e-27 125.6 169 37.3
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 1.5e-24 117.9 169 39.6
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 1.6e-23 114.4 206 30.1
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 4.1e-22 109.8 97 55.7
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 4.1e-22 109.8 97 55.7
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 2.2e-20 104.0 179 37.4
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 4.2e-19 99.8 181 35.4
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 5.1e-17 92.8 92 41.3
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 3.8e-12 76.6 164 30.5
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 2.5e-11 73.9 74 47.3
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.2e-10 71.6 51 60.8
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 2.0e-08 64.3 46 63.0
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 2.6e-08 63.9 66 40.9
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 1.3e-07 61.6 56 46.4
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 2.4e-06 57.4 372 22.3
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.3e-06 56.2 60 46.7


User provided reference genes

Program Settings