Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 7.6e-42 173.3 82 100.0
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 4.9e-25 117.5 80 67.5
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 5.4e-24 114.0 80 67.5
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 1.2e-23 112.8 82 68.3
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 2.3e-22 108.6 80 65.0
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 1.3e-20 102.8 73 67.1
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 1.6e-20 102.4 83 59.0
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 2.8e-20 101.7 73 65.8
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 3.7e-20 101.3 83 57.8
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 4.8e-20 100.9 64 68.8
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 4.8e-20 100.9 64 68.8
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 8.1e-20 100.1 73 64.4
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 8.1e-20 100.1 73 65.8
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 8.1e-20 100.1 85 58.8
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 1.1e-19 99.8 73 65.8
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 1.1e-19 99.8 73 64.4
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 1.1e-19 99.8 73 64.4
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 1.1e-19 99.8 73 64.4
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 1.1e-19 99.8 81 55.6
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 1.4e-19 99.4 81 55.6
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 1.8e-19 99.0 83 59.0
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 1.8e-19 99.0 84 57.1
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 2.4e-19 98.6 85 58.8
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 2.4e-19 98.6 73 63.0
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 3.1e-19 98.2 81 54.3
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 3.1e-19 98.2 83 57.8
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 3.1e-19 98.2 81 55.6
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 3.1e-19 98.2 81 55.6
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 3.1e-19 98.2 81 55.6
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 3.1e-19 98.2 81 55.6
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 3.1e-19 98.2 81 55.6
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 4.0e-19 97.8 85 57.6
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 4.0e-19 97.8 73 63.0
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 4.0e-19 97.8 73 64.4
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 5.3e-19 97.4 84 56.0
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 5.3e-19 97.4 60 70.0
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 5.3e-19 97.4 77 58.4
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 6.9e-19 97.1 85 56.5
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 6.9e-19 97.1 82 56.1
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 6.9e-19 97.1 84 56.0
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 6.9e-19 97.1 86 58.1
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 6.9e-19 97.1 82 58.5
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 6.9e-19 97.1 84 56.0
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 6.9e-19 97.1 62 67.7
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 6.9e-19 97.1 62 67.7
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 6.9e-19 97.1 60 70.0
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 9.0e-19 96.7 83 57.8
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 9.0e-19 96.7 85 56.5
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 9.0e-19 96.7 83 56.6
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 1.2e-18 96.3 60 68.3
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 1.2e-18 96.3 75 61.3
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 1.5e-18 95.9 70 62.9
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 1.5e-18 95.9 80 57.5
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 1.5e-18 95.9 82 57.3
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 2.0e-18 95.5 84 56.0
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 2.0e-18 95.5 84 56.0
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.0e-18 95.5 81 53.1
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.0e-18 95.5 81 53.1
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.0e-18 95.5 81 53.1
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.0e-18 95.5 81 53.1
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 2.0e-18 95.5 81 53.1
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 2.0e-18 95.5 81 53.1
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 2.0e-18 95.5 75 60.0
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 2.0e-18 95.5 82 56.1
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 2.6e-18 95.1 73 60.3
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 2.6e-18 95.1 70 62.9
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 2.6e-18 95.1 85 54.1
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 3.4e-18 94.7 83 55.4
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 3.4e-18 94.7 83 56.6
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 4.5e-18 94.4 73 60.3
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 4.5e-18 94.4 84 54.8
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 4.5e-18 94.4 84 54.8
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 4.5e-18 94.4 84 54.8
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 4.5e-18 94.4 84 54.8
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 4.5e-18 94.4 84 54.8
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 4.5e-18 94.4 70 61.4
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 4.5e-18 94.4 81 53.1
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 4.5e-18 94.4 81 53.1
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 4.5e-18 94.4 83 55.4
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 4.5e-18 94.4 84 54.8
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 5.8e-18 94.0 84 54.8
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 5.8e-18 94.0 84 54.8
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 5.8e-18 94.0 83 54.2
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 5.8e-18 94.0 85 54.1
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 5.8e-18 94.0 84 53.6
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 5.8e-18 94.0 63 65.1
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 7.6e-18 93.6 64 62.5
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 7.6e-18 93.6 84 54.8
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 7.6e-18 93.6 83 55.4
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 1.0e-17 93.2 81 51.9
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 1.0e-17 93.2 81 51.9
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 1.0e-17 93.2 81 51.9
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 1.0e-17 93.2 70 58.6
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 1.0e-17 93.2 85 55.3
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 1.0e-17 93.2 84 53.6
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 1.0e-17 93.2 81 51.9
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 1.0e-17 93.2 79 51.9
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 1.0e-17 93.2 75 58.7
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 1.0e-17 93.2 83 55.4
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 1.3e-17 92.8 64 62.5
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 1.3e-17 92.8 84 54.8
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.3e-17 92.8 81 51.9
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 1.3e-17 92.8 84 56.0
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 1.3e-17 92.8 82 54.9
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 1.3e-17 92.8 84 53.6
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 1.7e-17 92.4 84 54.8
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 1.7e-17 92.4 84 53.6
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 1.7e-17 92.4 84 53.6
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 1.7e-17 92.4 84 53.6
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 1.7e-17 92.4 73 58.9
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 1.7e-17 92.4 82 54.9
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 1.7e-17 92.4 84 54.8
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 2.2e-17 92.0 84 53.6
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 2.2e-17 92.0 84 53.6
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 2.2e-17 92.0 84 53.6
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 2.2e-17 92.0 80 55.0
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 2.2e-17 92.0 83 54.2
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 2.2e-17 92.0 75 57.3
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 2.9e-17 91.7 80 52.5
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 2.9e-17 91.7 83 54.2
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 3.8e-17 91.3 84 53.6
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 3.8e-17 91.3 84 53.6
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 4.9e-17 90.9 81 51.9
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 4.9e-17 90.9 64 60.9
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 8.4e-17 90.1 83 53.0
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 8.4e-17 90.1 70 55.7
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 1.1e-16 89.7 83 53.0
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 1.4e-16 89.4 57 64.9
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 1.4e-16 89.4 69 60.9
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 1.4e-16 89.4 84 52.4
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 2.5e-16 88.6 50 72.0
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 9.3e-16 86.7 63 65.1
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 1.6e-15 85.9 93 48.4
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 3.5e-15 84.7 50 68.0
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 3.5e-15 84.7 110 44.5
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 6.0e-15 84.0 50 68.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 1.0e-14 83.2 50 68.0
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 1.5e-13 79.3 102 40.2
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 1.9e-13 79.0 66 53.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 3.3e-13 78.2 49 63.3
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 3.7e-12 74.7 76 52.6
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 1.0e-06 56.6 61 50.8


User provided reference genes

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