Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AagrBONN_evm.TU.Sc2ySwM_344.103 Anthoceros agrestis HOM05D005333 ORTHO05D005776 5.9e-50 200.7 109 100.0
AagrBONN_evm.TU.Sc2ySwM_344.112 Anthoceros agrestis HOM05D005333 ORTHO05D005776 1.0e-41 173.3 109 87.2
Lalb_Chr12g0197971 Lupinus albus HOM05D005333 ORTHO05D005776 1.1e-11 73.6 101 49.5
FvH4_1g03150 Fragaria vesca HOM05D005333 ORTHO05D005776 1.4e-11 73.2 101 48.5
FAN19G1630 Fragaria x ananassa HOM05D005333 ORTHO05D005776 1.4e-11 73.2 101 48.5
Nn2g12046 Nelumbo nucifera HOM05D005333 ORTHO05D005776 1.4e-11 73.2 75 54.7
FAN26G1318 Fragaria x ananassa HOM05D005333 ORTHO05D005776 2.4e-11 72.4 100 48.0
Manes.14G133000 Manihot esculenta HOM05D005333 ORTHO05D005776 4.1e-11 71.6 50 70.0
MSTRG.12252 Avicennia marina HOM05D005333 ORTHO05D005776 5.4e-11 71.2 46 78.3
BraA03t10304Z Brassica rapa HOM05D005333 ORTHO05D005776 5.4e-11 71.2 101 48.5
Solyc07g008270.3 Solanum lycopersicum HOM05D005333 ORTHO05D005776 5.4e-11 71.2 45 73.3
Sopen07g004160 Solanum pennellii HOM05D005333 ORTHO05D005776 5.4e-11 71.2 45 73.3
PGSC0003DMG400019893 Solanum tuberosum HOM05D005333 ORTHO05D005776 5.4e-11 71.2 45 73.3
Medtr4g114610 Medicago truncatula HOM05D005333 ORTHO05D005776 9.2e-11 70.5 103 47.6
Nn2g12039 Nelumbo nucifera HOM05D005333 ORTHO05D005776 9.2e-11 70.5 47 74.5
Nitab4.5_0000028g0370 Nicotiana tabacum HOM05D005333 ORTHO05D005776 9.2e-11 70.5 45 73.3
Nitab4.5_0006661g0010 Nicotiana tabacum HOM05D005333 ORTHO05D005776 9.2e-11 70.5 45 73.3
Psat4g038680 Pisum sativum HOM05D005333 ORTHO05D005776 9.2e-11 70.5 106 47.2
GSVIVG01015545001 Vitis vinifera HOM05D005333 ORTHO05D005776 9.2e-11 70.5 45 75.6
TPR.G26498 Trifolium pratense HOM05D005333 ORTHO05D005776 1.2e-10 70.1 104 44.2
Carub.0006s1858 Capsella rubella HOM05D005333 ORTHO05D005776 1.6e-10 69.7 45 73.3
CARHR192640 Cardamine hirsuta HOM05D005333 ORTHO05D005776 1.6e-10 69.7 109 47.7
AL6G31740 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 2.0e-10 69.3 45 71.1
BolC3t13621H Brassica oleracea HOM05D005333 ORTHO05D005776 2.0e-10 69.3 101 47.5
Dinv36517 Davidia involucrata HOM05D005333 ORTHO05D005776 2.0e-10 69.3 46 73.9
Gohir.A06G055500 Gossypium hirsutum HOM05D005333 ORTHO05D005776 2.0e-10 69.3 57 64.9
Gorai.010G063500 Gossypium raimondii HOM05D005333 ORTHO05D005776 2.0e-10 69.3 57 64.9
Oeu044201.1 Olea europaea HOM05D005333 ORTHO05D005776 2.0e-10 69.3 45 75.6
arahy.Tifrunner.gnm1.ann1.83L7WY Arachis hypogaea HOM05D005333 ORTHO05D005776 2.7e-10 68.9 102 48.0
Gohir.D06G054400 Gossypium hirsutum HOM05D005333 ORTHO05D005776 2.7e-10 68.9 57 64.9
Peaxi162Scf00046g00622 Petunia axillaris HOM05D005333 ORTHO05D005776 2.7e-10 68.9 45 68.9
Ciclev10010005m.g Citrus clementina HOM05D005333 ORTHO05D005776 3.5e-10 68.6 45 68.9
DCAR_014887 Daucus carota HOM05D005333 ORTHO05D005776 3.5e-10 68.6 60 65.0
arahy.Tifrunner.gnm1.ann1.U3NP9C Arachis hypogaea HOM05D005333 ORTHO05D005776 4.6e-10 68.2 102 47.1
CANSAT11G0814 Cannabis sativa HOM05D005333 ORTHO05D005776 4.6e-10 68.2 43 76.7
Duzib187G1708 Durio zibethinus HOM05D005333 ORTHO05D005776 4.6e-10 68.2 45 73.3
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 4.6e-10 68.2 100 46.0
Hma1.2p1_0018F.1_g012330 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 4.6e-10 68.2 45 71.1
Sc08g0006540 Simmondsia chinensis HOM05D005333 ORTHO05D005776 4.6e-10 68.2 45 71.1
Rhsim01G0068900 Rhododendron simsii HOM05D005333 ORTHO05D005776 7.8e-10 67.4 44 75.0
SalBow6G5031 Salvia bowleyana HOM05D005333 ORTHO05D005776 7.8e-10 67.4 45 75.6
Migut.H01282 Erythranthe guttata HOM05D005333 ORTHO05D005776 1.0e-09 67.0 105 48.6
Hund09250 Selenicereus undatus HOM05D005333 ORTHO05D005776 1.0e-09 67.0 45 71.1
Atru.chr1.953 Acer truncatum HOM05D005333 ORTHO05D005776 1.3e-09 66.6 43 69.8
CiPaw.03G244900 Carya illinoinensis HOM05D005333 ORTHO05D005776 1.3e-09 66.6 104 48.1
CDE04G2910 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.3e-09 66.6 43 74.4
Actinidia40477 Actinidia chinensis HOM05D001011 ORTHO05D000851 2.3e-09 65.9 52 63.5
C03p11490 Brassica napus HOM05D005333 ORTHO05D005776 2.3e-09 65.9 101 45.5
Duzib168G0900 Durio zibethinus HOM05D005333 ORTHO05D005776 2.3e-09 65.9 47 68.1
Potri.018G131000 Populus trichocarpa HOM05D005333 ORTHO05D005776 2.3e-09 65.9 71 53.5
ClCG06G011210 Citrullus lanatus HOM05D005333 ORTHO05D005776 3.0e-09 65.5 73 52.1
SGA_v2.0_scaffold109G31056 Striga asiatica HOM05D005333 ORTHO05D005776 3.0e-09 65.5 59 61.0
vmacro20565 Vaccinium macrocarpon HOM05D005333 ORTHO05D005776 3.0e-09 65.5 106 47.2
VMungo1215G0455 Vigna mungo HOM05D005333 ORTHO05D005776 3.0e-09 65.5 106 41.5
FAN23G1698 Fragaria x ananassa HOM05D005333 ORTHO05D005776 3.9e-09 65.1 114 43.9
Potri.006G069000 Populus trichocarpa HOM05D005333 ORTHO05D005776 3.9e-09 65.1 61 60.7
Mapoly0008s0076 Marchantia polymorpha HOM05D005333 ORTHO05D005776 5.0e-09 64.7 103 46.6
EL10Ac8g18671 Beta vulgaris HOM05D005333 ORTHO05D005776 6.6e-09 64.3 45 68.9
COL.COLO4_35113 Corchorus olitorius HOM05D005333 ORTHO05D005776 6.6e-09 64.3 73 50.7
Dinv41504 Davidia involucrata HOM05D005333 ORTHO05D005776 6.6e-09 64.3 57 59.6
Prupe.7G066500 Prunus persica HOM05D005333 ORTHO05D005776 6.6e-09 64.3 108 44.4
Prupe.7G244000 Prunus persica HOM05D005333 ORTHO05D005776 6.6e-09 64.3 108 44.4
Cc06_g08400 Coffea canephora HOM05D005333 ORTHO05D005776 8.6e-09 63.9 106 48.1
ECA246G0448 Erigeron canadensis HOM05D005333 ORTHO05D005776 8.6e-09 63.9 41 73.2
Glyma.13G166400 Glycine max HOM05D005333 ORTHO05D005776 8.6e-09 63.9 106 41.5
Phvul.003G165300 Phaseolus vulgaris HOM05D005333 ORTHO05D005776 8.6e-09 63.9 104 40.4
PGR102G2059 Punica granatum HOM05D005333 ORTHO05D005776 8.6e-09 63.9 114 43.0
Sed0012264 Sechium edule HOM05D005333 ORTHO05D005776 8.6e-09 63.9 102 47.1
Cpa.g.sc46.7 Carica papaya HOM05D005333 ORTHO05D005776 1.1e-08 63.5 101 46.5
SMO116G0310 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 1.1e-08 63.5 62 58.1
Thecc.09G127500 Theobroma cacao HOM05D005333 ORTHO05D005776 1.1e-08 63.5 75 52.0
AT5G20180 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 1.5e-08 63.2 103 45.6
Hma1.2p1_0931F.1_g238060 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 1.5e-08 63.2 60 63.3
Lsat_1_v5_gn_5_31321 Lactuca sativa HOM05D005333 ORTHO05D005776 1.5e-08 63.2 49 61.2
RcHm_v2.0_Chr2g0088271 Rosa chinensis HOM05D005333 ORTHO05D005776 1.5e-08 63.2 99 44.4
Ciclev10010320m.g Citrus clementina HOM05D005333 ORTHO05D005776 1.9e-08 62.8 45 62.2
CsaV3_1G030220 Cucumis sativus L. HOM05D005333 ORTHO05D005776 1.9e-08 62.8 101 43.6
Lalb_Chr07g0179001 Lupinus albus HOM05D005333 ORTHO05D005776 1.9e-08 62.8 101 45.5
Thhalv10015097m.g Eutrema salsugineum HOM05D005333 ORTHO05D005776 2.5e-08 62.4 103 42.7
Lj4g0022056 Lotus japonicus HOM05D005333 ORTHO05D005776 2.5e-08 62.4 99 43.4
MD15G1172100 Malus domestica HOM05D005333 ORTHO05D005776 2.5e-08 62.4 50 60.0
QL02p088661 Quercus lobata HOM05D005333 ORTHO05D005776 2.5e-08 62.4 61 52.5
SGA_v2.0_scaffold49G18402 Striga asiatica HOM05D005333 ORTHO05D005776 2.5e-08 62.4 73 54.8
MELO3C010337.2 Cucumis melo HOM05D005333 ORTHO05D005776 3.3e-08 62.0 73 47.9
TWI34G1084 Tripterygium wilfordii HOM05D005333 ORTHO05D005776 3.3e-08 62.0 103 47.6
Zm00001eb212180 Zea mays HOM05D005333 ORTHO05D005776 3.3e-08 62.0 55 63.6
Cfa003386 Carpinus fangiana HOM05D005333 ORTHO05D005776 4.3e-08 61.6 99 43.4
MBI01_g15682_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 4.3e-08 61.6 75 52.0
Aa31LG1G14430 Aethionema arabicum HOM05D005333 ORTHO05D005776 5.6e-08 61.2 77 49.4
Sp6g24220 Schrenkiella parvula HOM05D005333 ORTHO05D005776 5.6e-08 61.2 101 43.6
unitig_748.g8609 Utricularia gibba HOM05D005333 ORTHO05D005776 5.6e-08 61.2 74 52.7
Aqoxy7G03689 Aquilegia oxysepala HOM05D005333 ORTHO05D005776 7.3e-08 60.8 101 45.5
CDE10G0227 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 7.3e-08 60.8 78 51.3
AUR62013349 Chenopodium quinoa HOM05D005333 ORTHO05D005776 7.3e-08 60.8 76 53.9
Glyma.17G114100 Glycine max HOM05D005333 ORTHO05D005776 7.3e-08 60.8 104 40.4
MBI01_g45309_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 7.3e-08 60.8 75 52.0
Pp3c15_5230 Physcomitrium patens HOM05D005333 ORTHO05D005776 9.5e-08 60.5 105 44.8
THA.LOC104799642 Tarenaya hassleriana HOM05D005333 ORTHO05D005776 9.5e-08 60.5 102 45.1
A03p09910 Brassica napus HOM05D005333 ORTHO05D005776 1.2e-07 60.1 106 43.4
CBR_g19308 Chara braunii HOM05D005333 ORTHO05D005776 1.6e-07 59.7 116 43.1
Zm00001eb103590 Zea mays HOM05D001170 ORTHO05D006602 1.6e-07 59.7 109 39.4
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 2.1e-07 59.3 50 58.0
Eucgr.C01530 Eucalyptus grandis HOM05D005333 ORTHO05D005776 2.8e-07 58.9 104 40.4
DCAR_020918 Daucus carota HOM05D005333 ORTHO05D005776 3.6e-07 58.5 99 46.5
Lj4g0001981 Lotus japonicus HOM05D005333 ORTHO05D005776 3.6e-07 58.5 99 42.4
Eucgr.C01196 Eucalyptus grandis HOM05D005333 ORTHO05D005776 4.7e-07 58.2 102 40.2
MD02G1030500 Malus domestica HOM05D005333 ORTHO05D005776 4.7e-07 58.2 101 41.6
BraA02t05559Z Brassica rapa HOM05D005333 ORTHO05D005776 8.0e-07 57.4 47 57.4
AUR62011139 Chenopodium quinoa HOM05D005333 ORTHO05D005776 8.0e-07 57.4 76 52.6
Rhsim03G0248400 Rhododendron simsii HOM05D005333 ORTHO05D005776 1.1e-06 57.0 78 51.3
Zm00001eb091680 Zea mays HOM05D001170 ORTHO05D006602 1.1e-06 57.0 109 39.4
Zm00001eb091690 Zea mays HOM05D001170 ORTHO05D006602 1.1e-06 57.0 109 39.4
BcaB05g22866 Brassica carinata HOM05D005333 ORTHO05D005776 1.4e-06 56.6 47 55.3
BcaC03g13741 Brassica carinata HOM05D005333 ORTHO05D005776 1.8e-06 56.2 47 55.3
BolC2t07023H Brassica oleracea HOM05D005333 ORTHO05D005776 1.8e-06 56.2 47 55.3
SMO197G0073 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 1.8e-06 56.2 47 59.6
A02p06080 Brassica napus HOM05D005333 ORTHO05D005776 2.3e-06 55.8 47 53.2
BNapus_Darmor_BZH_scaffold_38p01760 Brassica napus HOM05D005333 ORTHO05D005776 2.3e-06 55.8 47 53.2
CDE10G0631 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 2.3e-06 55.8 78 51.3
Os03g0811800 Oryza sativa ssp. japonica HOM05D005333 ORTHO05D005776 5.2e-06 54.7 99 42.4
PRCOL_00005826 Prasinoderma coloniale HOM05D005333 ORTHO05D005776 6.8e-06 54.3 82 45.1


User provided reference genes

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