Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 1.1e-182 643.3 347 100.0
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 1.4e-84 317.4 414 53.9
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 3.4e-83 312.8 415 52.8
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 1.9e-81 307.0 415 52.8
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 1.9e-81 307.0 415 52.8
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 1.9e-81 307.0 415 52.8
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 1.5e-75 287.3 415 50.8
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 8.6e-71 271.6 416 49.8
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 2.4e-68 263.5 415 46.3
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 4.4e-67 259.2 417 49.2
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 2.5e-62 243.4 367 51.0
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 7.1e-49 198.7 323 47.7
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 6.2e-45 185.7 392 38.5
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.4e-44 184.5 418 41.6
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.9e-42 176.8 350 39.4
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 2.9e-42 176.8 390 37.2
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 3.8e-42 176.4 401 36.9
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 6.5e-42 175.6 421 37.3
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 1.2e-40 171.4 378 40.7
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 2.7e-40 170.2 444 39.9
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.3e-39 167.2 338 40.5
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 6.2e-37 159.1 432 35.9
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 1.8e-36 157.5 418 37.1
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 4.1e-36 156.4 374 40.4
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 6.9e-36 155.6 388 36.9
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 9.3e-33 145.2 363 39.1
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 4.6e-32 142.9 428 36.2
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 6.1e-32 142.5 382 36.4
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 2.3e-31 140.6 442 32.8
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.1e-30 138.3 410 34.4
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 1.5e-30 137.9 392 33.9
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 1.5e-30 137.9 471 34.8
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 7.4e-30 135.6 426 37.8
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.3e-29 134.8 344 35.8
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 2.2e-29 134.0 383 35.5
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 2.8e-29 133.7 344 35.8
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 3.7e-29 133.3 352 35.2
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 4.8e-29 132.9 457 32.8
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 8.2e-29 132.1 461 31.9
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.8e-28 131.0 415 33.7
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 2.4e-28 130.6 415 33.7
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 2.4e-28 130.6 476 33.2
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 3.1e-28 130.2 421 35.2
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 6.9e-28 129.0 369 37.1
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 9.0e-28 128.6 362 36.2
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.5e-27 127.9 347 34.9
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.5e-27 126.3 396 33.8
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 1.0e-26 125.2 365 34.0
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.3e-26 124.8 360 35.0
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 1.7e-26 124.4 258 41.1
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.2e-26 124.0 439 31.2
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 3.8e-26 123.2 389 33.4
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 8.5e-26 122.1 197 47.2
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 8.5e-26 122.1 331 36.6
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 1.1e-25 121.7 386 37.3
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 1.4e-25 121.3 345 33.0
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 1.9e-25 120.9 249 43.0
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.9e-25 120.9 353 34.6
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 3.2e-25 120.2 263 38.0
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 4.2e-25 119.8 138 50.0
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 4.2e-25 119.8 253 37.9
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 5.5e-25 119.4 120 59.2
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 9.4e-25 118.6 130 51.5
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 1.2e-24 118.2 383 32.6
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 1.2e-24 118.2 433 32.8
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.2e-24 118.2 382 33.8
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.2e-24 118.2 438 30.6
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 1.2e-24 118.2 209 40.7
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 1.2e-24 118.2 209 40.7
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 1.6e-24 117.9 426 32.6
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 2.1e-24 117.5 134 50.0
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.7e-24 117.1 379 36.7
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 1.0e-23 115.2 438 35.8
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 1.4e-23 114.8 259 35.5
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.4e-23 114.8 438 30.1
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.8e-23 114.4 383 35.0
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 2.3e-23 114.0 434 32.7
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 2.3e-23 114.0 387 35.1
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 3.0e-23 113.6 447 35.1
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 6.7e-23 112.5 256 39.1
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 1.1e-22 111.7 135 48.1
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.0e-22 110.9 189 46.0
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 2.5e-22 110.5 402 31.3
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 3.3e-22 110.2 435 32.0
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 5.7e-22 109.4 370 31.6
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 1.7e-21 107.8 127 48.0
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 1.7e-21 107.8 369 32.8
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.7e-21 107.8 137 51.1
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 2.2e-21 107.5 258 34.9
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 3.7e-21 106.7 138 52.2
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 4.8e-21 106.3 227 38.3
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 1.4e-20 104.8 130 53.1
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 3.1e-20 103.6 476 31.3
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 4.1e-20 103.2 368 33.7
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 5.3e-20 102.8 180 46.1
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 1.2e-19 101.7 377 31.3
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 1.2e-19 101.7 414 32.9
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 1.2e-19 101.7 146 47.3
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 1.5e-19 101.3 217 41.9
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.5e-19 101.3 217 41.9
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 5.9e-19 99.4 233 39.1
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 5.9e-19 99.4 108 50.0
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 1.3e-18 98.2 476 28.8
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 1.7e-18 97.8 470 30.0
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.2e-18 97.4 568 27.8
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 3.8e-18 96.7 435 29.9
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.0e-18 96.3 126 44.4
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 6.5e-18 95.9 121 52.9
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.1e-17 95.1 377 32.9
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 7.2e-17 92.4 130 51.5
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 2.7e-16 90.5 373 29.5
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.7e-16 90.5 215 33.0
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.6e-16 90.1 393 31.0
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.6e-16 90.1 393 31.0
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 7.9e-16 89.0 386 32.9
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 1.0e-15 88.6 357 29.1
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 3.3e-14 83.6 347 31.4
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 4.4e-14 83.2 275 35.3
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 5.7e-14 82.8 146 37.7
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 7.4e-14 82.4 148 36.5
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 2.2e-13 80.9 126 41.3
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 6.3e-13 79.3 146 41.8
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 2.4e-12 77.4 100 47.0
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 3.5e-11 73.6 351 29.6
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 1.3e-10 71.6 106 47.2
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.5e-09 68.2 351 25.6
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.2e-09 67.0 354 32.8
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 4.2e-09 66.6 195 33.8
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 5.5e-09 66.2 136 45.6
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 1.6e-08 64.7 240 35.0
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 1.0e-07 62.0 46 63.0
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 6.7e-07 59.3 349 26.6
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 2.0e-06 57.8 135 40.7
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 2.6e-06 57.4 336 26.8


User provided reference genes

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