Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 3.1e-176 621.7 317 100.0
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 7.0e-144 514.2 315 82.2
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 1.2e-143 513.5 307 85.7
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 3.5e-143 511.9 308 85.7
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 5.9e-143 511.1 315 82.9
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 1.0e-142 510.4 315 82.2
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 1.3e-142 510.0 315 81.9
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 8.5e-142 507.3 315 81.9
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 1.5e-141 506.5 316 81.0
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 1.3e-137 493.4 314 80.6
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 1.1e-136 490.3 313 81.8
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 7.7e-135 484.2 309 82.2
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 3.6e-124 448.7 308 73.1
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 8.0e-124 447.6 311 72.3
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.0e-123 447.2 311 72.3
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 3.1e-123 445.7 276 81.5
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 7.5e-122 441.0 308 71.4
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 9.8e-122 440.7 307 74.6
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 9.8e-122 440.7 311 70.4
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 6.4e-121 438.0 316 68.0
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 1.9e-120 436.4 314 70.7
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 9.2e-120 434.1 314 68.5
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 2.3e-118 429.5 314 68.5
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 3.0e-118 429.1 317 68.5
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 3.9e-118 428.7 322 66.1
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 5.0e-118 428.3 314 67.5
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 6.6e-118 427.9 320 70.6
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 1.1e-117 427.2 308 68.8
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.1e-117 427.2 324 67.6
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 2.5e-117 426.0 310 68.7
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 3.3e-117 425.6 319 68.3
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 5.6e-117 424.9 317 67.2
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 5.6e-117 424.9 306 69.3
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 7.3e-117 424.5 317 67.5
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.2e-116 423.7 318 68.6
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 1.6e-116 423.3 308 69.2
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 1.6e-116 423.3 311 68.2
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.8e-116 422.5 318 68.2
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.8e-116 422.5 318 68.2
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 2.8e-116 422.5 316 68.7
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 3.6e-116 422.2 311 68.8
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 4.7e-116 421.8 314 68.8
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 4.7e-116 421.8 317 66.2
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 6.2e-116 421.4 314 68.8
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 6.2e-116 421.4 311 67.8
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 1.1e-115 420.6 313 67.7
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 1.1e-115 420.6 308 67.9
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 1.1e-115 420.6 314 68.8
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 1.4e-115 420.2 311 66.9
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 1.8e-115 419.9 318 67.0
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 2.3e-115 419.5 311 66.9
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 4.0e-115 418.7 312 67.9
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 4.0e-115 418.7 318 67.6
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 5.2e-115 418.3 311 67.2
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 6.8e-115 417.9 313 68.4
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 6.8e-115 417.9 322 68.0
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 6.8e-115 417.9 327 64.2
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 8.9e-115 417.5 321 67.0
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 8.9e-115 417.5 321 67.0
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 1.2e-114 417.2 311 68.2
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 1.2e-114 417.2 312 67.9
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 1.5e-114 416.8 307 68.4
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 1.5e-114 416.8 312 67.9
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 1.5e-114 416.8 314 68.2
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 2.6e-114 416.0 296 70.3
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 5.8e-114 414.8 309 68.9
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 7.5e-114 414.5 314 67.8
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 9.8e-114 414.1 321 66.7
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 9.8e-114 414.1 315 66.0
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 1.3e-113 413.7 311 66.9
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 2.2e-113 412.9 301 69.8
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 2.2e-113 412.9 310 67.4
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 2.2e-113 412.9 311 66.9
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 2.4e-112 409.5 298 68.1
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 9.2e-112 407.5 312 65.4
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 1.6e-111 406.8 321 65.4
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 2.1e-111 406.4 305 68.5
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 2.7e-111 406.0 311 67.5
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 3.5e-111 405.6 307 67.4
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 1.3e-110 403.7 311 64.3
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 6.6e-110 401.4 336 61.3
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 6.6e-110 401.4 309 66.3
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 1.9e-109 399.8 314 65.3
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 7.3e-109 397.9 310 65.5
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 1.4e-107 393.7 339 61.1
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 4.0e-107 392.1 311 65.0
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 5.2e-107 391.7 282 68.4
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 3.4e-106 389.0 306 63.7
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 1.7e-105 386.7 313 64.9
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 3.8e-105 385.6 304 63.8
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 2.4e-104 382.9 318 62.9
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 9.2e-104 380.9 304 63.2
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 6.0e-103 378.3 323 60.7
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 1.3e-97 360.5 308 61.0
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 5.4e-96 355.1 328 56.7
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.7e-94 350.1 375 52.3
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.9e-94 349.0 303 59.7
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 1.8e-91 340.1 302 58.6
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 5.8e-90 335.1 306 57.5
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.4e-88 329.7 230 71.7
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.6e-87 327.0 301 54.2
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 3.0e-86 322.8 302 55.0
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 8.7e-86 321.2 230 68.3
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 1.5e-82 310.5 300 56.0
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 2.2e-81 306.6 229 65.9
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 1.9e-80 303.5 351 48.1
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.2e-74 284.3 276 57.6
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 8.4e-73 278.1 233 60.5
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 6.0e-71 271.9 340 48.2
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 4.8e-68 262.3 197 63.5
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 3.6e-63 246.1 187 65.2
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 4.6e-63 245.7 187 66.8
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.8e-57 226.1 206 58.3
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 8.8e-54 214.9 217 53.5
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 3.9e-46 189.5 153 60.1
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.1e-43 181.4 160 56.2
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 4.1e-43 179.5 287 41.1
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 5.5e-40 169.1 230 47.4
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.5e-37 161.0 210 47.6
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 5.7e-37 159.1 329 34.7
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 9.1e-35 151.8 102 72.5
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 3.0e-30 136.7 124 58.9
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 1.7e-28 131.0 302 34.4
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 1.1e-24 118.2 121 56.2
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 3.6e-23 113.2 169 44.4
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 2.2e-20 104.0 121 54.5
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.6e-18 97.8 145 38.6
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 5.9e-18 95.9 62 74.2
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.3e-17 94.0 82 57.3
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 8.6e-17 92.0 70 62.9
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 5.6e-16 89.4 73 63.0
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 7.3e-16 89.0 118 44.9
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 9.5e-16 88.6 65 61.5
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 3.0e-14 83.6 89 49.4
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 9.8e-13 78.6 107 42.1
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 1.8e-11 74.3 70 60.0
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.8e-11 74.3 85 49.4
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 7.0e-11 72.4 83 48.2
A02p37740 Brassica napus HOM05D026193 ORTHO05D028104 1.6e-10 71.2 164 34.8
BraA02t08756Z Brassica rapa HOM05D026193 ORTHO05D028104 1.6e-10 71.2 164 34.8
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.7e-09 67.8 60 55.0
C02p56830 Brassica napus HOM05D026193 ORTHO05D028104 4.3e-08 63.2 120 36.7
Actinidia30088 Actinidia chinensis HOM05D005470 ORTHO05D057321 8.9e-06 55.5 44 65.9
BolC2t11752H Brassica oleracea HOM05D026193 ORTHO05D028104 8.9e-06 55.5 120 35.0


User provided reference genes

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