Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 7.0e-306 1053.1 532 100.0
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 7.2e-226 787.3 534 77.5
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 4.4e-215 751.5 535 73.5
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 5.3e-213 744.6 534 74.2
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 4.5e-212 741.5 537 74.5
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 5.9e-212 741.1 535 73.1
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 1.0e-211 740.3 535 73.1
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 2.9e-211 738.8 545 71.6
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 7.2e-210 734.2 535 72.5
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 2.7e-209 732.3 539 73.7
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 3.6e-209 731.9 537 74.1
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 3.6e-209 731.9 538 73.8
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 7.5e-207 724.2 537 73.6
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 1.2e-204 716.8 531 72.1
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 1.2e-204 716.8 531 72.1
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 7.7e-204 714.1 532 72.4
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 6.1e-201 704.5 533 71.7
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 6.8e-200 701.0 537 69.8
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 1.3e-198 696.8 532 71.1
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 8.4e-134 481.5 539 49.5
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 5.7e-130 468.8 537 50.3
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 1.6e-129 467.2 479 52.8
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 3.7e-129 466.1 444 57.0
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 3.7e-129 466.1 444 56.1
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 8.2e-129 464.9 448 56.2
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 2.0e-127 460.3 450 55.8
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 5.8e-127 458.8 537 49.2
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 7.6e-127 458.4 546 48.7
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 1.0e-126 458.0 537 49.0
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 9.3e-125 451.4 533 49.0
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 1.8e-123 447.2 536 47.0
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 3.0e-123 446.4 542 49.1
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 5.7e-122 442.2 534 47.6
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 7.4e-122 441.8 531 46.9
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 9.7e-122 441.4 536 48.5
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 4.8e-121 439.1 537 48.0
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.2e-119 434.5 453 51.4
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 3.4e-119 433.0 459 52.1
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 7.7e-119 431.8 446 52.0
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.0e-118 431.4 546 44.3
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.3e-118 431.0 446 52.0
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 5.0e-118 429.1 539 45.5
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 4.2e-117 426.0 446 52.0
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 4.2e-117 426.0 440 52.5
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 9.4e-117 424.9 531 46.1
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 2.1e-116 423.7 513 48.3
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 2.3e-115 420.2 478 51.0
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 2.3e-115 420.2 444 50.9
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 2.5e-114 416.8 444 50.2
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 9.7e-114 414.8 443 51.7
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 2.8e-113 413.3 492 45.9
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 8.2e-113 411.8 489 46.2
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 8.2e-113 411.8 517 45.1
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 1.1e-112 411.4 481 47.8
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 2.4e-112 410.2 528 46.4
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 2.0e-111 407.1 531 43.5
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 2.6e-111 406.8 444 49.8
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 7.7e-111 405.2 444 49.5
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 7.7e-111 405.2 439 51.3
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 1.0e-110 404.8 511 47.7
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 1.3e-110 404.4 536 45.5
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 2.2e-110 403.7 441 50.1
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.9e-109 400.6 499 46.3
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 1.9e-109 400.6 508 47.0
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 3.2e-109 399.8 442 49.8
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 2.3e-107 393.7 446 48.7
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 3.9e-107 392.9 442 47.1
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.5e-106 391.0 478 47.3
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 3.3e-106 389.8 481 44.9
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 4.4e-106 389.4 457 46.8
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 4.4e-106 389.4 443 47.9
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 4.4e-106 389.4 481 47.6
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 5.7e-106 389.0 482 47.3
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 9.7e-106 388.3 478 46.7
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 1.3e-105 387.9 459 47.5
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 4.8e-105 386.0 521 43.6
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 4.1e-104 382.9 441 47.4
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 5.9e-103 379.0 445 47.2
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 2.9e-102 376.7 507 42.2
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 1.5e-101 374.4 393 51.4
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 5.7e-98 362.5 443 46.3
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 9.7e-98 361.7 488 43.0
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 9.7e-98 361.7 484 42.8
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 8.2e-97 358.6 442 44.6
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 1.4e-96 357.8 506 43.1
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 1.4e-96 357.8 596 39.8
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 5.3e-96 355.9 534 40.1
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 3.5e-95 353.2 516 43.6
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 2.5e-93 347.1 354 50.8
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 3.6e-92 343.2 495 43.0
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 7.5e-90 335.5 370 48.1
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 1.1e-88 331.6 389 46.3
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 1.1e-88 331.6 445 44.9
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 8.0e-84 315.5 377 44.3
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 2.8e-81 307.0 456 41.2
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 1.1e-80 305.1 468 41.5
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.3e-77 293.1 308 51.3
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 7.3e-77 292.4 446 39.7
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 1.5e-74 284.6 373 42.9
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 7.5e-74 282.3 209 68.4
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 9.8e-66 255.4 443 34.5
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 4.6e-55 219.9 499 33.9
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 1.3e-54 218.4 189 59.8
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 2.4e-48 197.6 316 39.9
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 5.4e-48 196.4 245 45.3
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 1.5e-45 188.3 451 30.6
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 3.3e-45 187.2 142 66.9
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 4.0e-43 180.3 468 32.1
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 7.6e-42 176.0 433 31.6
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 4.9e-41 173.3 277 37.2
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 6.0e-39 166.4 309 36.2
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 3.0e-38 164.1 213 42.7
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 5.6e-37 159.8 469 29.0
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 4.8e-36 156.8 156 58.3
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.8e-33 147.1 125 61.6
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 4.9e-33 146.7 118 61.9
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 1.9e-32 144.8 141 51.1
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 4.6e-31 140.2 196 40.3
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 1.6e-28 131.7 230 34.3
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 1.7e-25 121.7 196 36.7
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 7.6e-18 96.3 134 38.8
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 3.3e-13 80.9 133 45.1
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 7.4e-13 79.7 68 51.5
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 9.6e-13 79.3 193 29.5
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 3.8e-09 67.4 205 26.8
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.7e-07 61.2 99 30.3
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 6.1e-07 60.1 67 43.3
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 8.7e-06 56.2 62 43.5


User provided reference genes

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