Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1540.8 839 100.0
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1364.0 835 90.2
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1348.2 834 88.6
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 0.0e+00 1344.3 835 87.5
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1338.2 836 87.3
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1328.2 836 86.6
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1325.1 833 87.2
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 0.0e+00 1324.7 837 86.5
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 0.0e+00 1322.4 836 87.0
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1318.9 831 86.4
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1315.8 833 86.4
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1311.6 831 86.2
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1310.4 831 86.0
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1271.1 829 85.2
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1263.4 787 86.0
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 0.0e+00 1239.9 733 88.7
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1177.5 690 87.5
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1170.6 835 75.0
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1159.8 835 73.2
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1153.3 833 74.8
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1145.6 846 73.8
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1140.2 791 76.0
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1139.8 790 74.9
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1136.3 836 72.2
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1135.2 831 75.1
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1133.2 839 71.8
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1132.9 798 75.9
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1131.3 835 74.1
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1127.1 794 75.7
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1120.9 833 69.9
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1118.2 827 73.9
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1117.8 838 73.7
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1114.4 826 69.6
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1114.0 835 73.4
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1114.0 827 70.9
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1113.6 841 70.0
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1112.4 832 72.2
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1111.7 826 70.0
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1109.7 835 73.4
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1109.4 833 69.1
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1109.0 834 70.3
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 0.0e+00 1108.2 625 90.4
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1108.2 828 72.5
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1107.4 834 70.5
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1107.0 839 70.1
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1105.1 839 70.0
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1103.6 833 68.8
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1103.2 842 70.3
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1100.1 839 69.7
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1098.2 839 69.5
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1096.6 827 70.6
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1095.1 836 70.0
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1094.7 839 69.2
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1094.3 837 68.9
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1094.3 827 70.0
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1092.0 827 70.3
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1091.6 825 72.5
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1089.3 833 69.3
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1088.9 833 68.9
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1087.0 951 63.6
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1085.1 833 69.0
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1080.1 827 71.3
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1079.7 836 70.3
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1078.9 810 70.7
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1078.5 851 68.5
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1076.6 825 68.0
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1076.6 826 69.7
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1076.2 755 73.0
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1076.2 763 72.2
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 5.7e-312 1074.7 835 67.3
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 5.7e-312 1074.7 851 68.3
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 1.1e-311 1072.8 866 69.2
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 2.3e-311 1072.0 827 71.3
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 3.3e-310 1068.1 761 71.7
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 6.3e-309 1063.9 823 67.6
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.4e-308 1062.8 764 72.8
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 1.8e-308 1062.4 823 67.6
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 2.4e-308 1062.0 832 68.8
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 1.2e-307 1059.7 826 68.3
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.0e-307 1058.9 757 72.8
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 2.0e-307 1058.9 835 69.8
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 3.8e-306 1054.7 836 68.2
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 6.5e-306 1053.9 830 69.5
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 1.9e-305 1052.4 830 68.0
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 7.9e-304 1047.0 829 66.5
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 5.1e-303 1044.3 837 68.2
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 1.7e-301 1039.3 833 66.4
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 6.3e-301 1037.3 842 65.9
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 1.8e-300 1035.8 822 64.5
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 3.1e-300 1035.0 889 64.6
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 5.0e-298 1027.7 834 65.5
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 1.4e-295 1019.6 834 64.9
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 8.5e-290 1000.3 828 64.7
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 1.8e-287 992.6 906 61.3
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 6.3e-285 984.2 667 73.2
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 1.1e-284 983.4 832 64.2
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 8.3e-277 957.2 760 68.3
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 3.5e-275 951.8 833 61.1
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 2.9e-274 948.7 648 73.8
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 9.5e-273 943.7 648 73.5
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 9.5e-273 943.7 826 59.8
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 6.8e-271 937.6 932 58.9
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 9.8e-270 933.7 826 61.7
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 1.2e-267 926.8 832 59.4
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 1.7e-261 906.4 640 72.2
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 3.0e-258 895.6 832 59.7
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 2.8e-256 889.0 831 55.6
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 2.6e-246 855.9 568 73.9
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 7.1e-244 847.8 824 53.3
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.0e-242 844.0 832 52.6
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 9.0e-231 804.3 789 53.0
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 3.1e-223 779.2 824 56.6
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 2.7e-219 766.1 783 50.8
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.1e-211 740.0 843 53.4
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 3.0e-194 682.9 426 79.6
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 1.4e-154 551.2 478 62.6
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.8e-151 540.8 449 65.7
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 3.2e-135 486.9 322 77.6
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 2.0e-121 441.0 367 74.1
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 2.0e-121 441.0 799 33.8
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 2.6e-121 440.7 312 68.6
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 2.4e-119 434.1 787 34.3
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.4e-114 418.3 285 73.0
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 9.0e-106 389.0 384 56.5
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 6.0e-94 349.7 878 30.9
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.3e-77 294.7 278 59.0
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 7.0e-66 256.5 378 47.4
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 5.5e-63 246.9 312 49.7
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 1.7e-56 225.3 131 87.0
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 2.1e-46 191.8 140 70.0
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 2.7e-41 174.9 125 70.4
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 5.9e-41 173.7 142 67.6
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 1.1e-34 152.9 121 68.6
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.3e-32 146.0 157 49.0
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.7e-32 145.6 157 49.0
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 6.6e-32 143.7 156 54.5
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 6.8e-21 107.1 70 81.4
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 6.0e-09 67.4 133 39.8
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 5.1e-08 64.3 115 37.4


User provided reference genes

Program Settings