Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 6.3e-45 183.7 92 100.0
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 4.2e-25 117.9 92 65.2
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 4.2e-25 117.9 92 65.2
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 4.2e-25 117.9 92 65.2
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 4.2e-25 117.9 92 65.2
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 4.2e-25 117.9 92 65.2
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 5.5e-25 117.5 92 65.2
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 8.8e-23 110.2 86 66.3
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.3e-21 106.3 86 64.0
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 6.3e-21 104.0 97 63.9
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 1.6e-19 99.4 78 61.5
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 1.5e-17 92.8 83 62.7
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 1.9e-17 92.4 74 63.5
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 3.2e-17 91.7 81 64.2
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 5.5e-17 90.9 74 62.2
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 5.5e-17 90.9 74 62.2
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 7.2e-17 90.5 78 61.5
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 9.5e-17 90.1 74 62.2
BcaC01g01656 Brassica carinata HOM05D007247 ORTHO05D009208 1.6e-16 89.4 74 62.2
BolC3t19629H Brassica oleracea HOM05D007247 ORTHO05D009208 1.6e-16 89.4 74 62.2
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 8.0e-16 87.0 85 52.9
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 1.0e-15 86.7 57 73.7
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 1.0e-15 86.7 78 64.1
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 2.3e-15 85.5 67 62.7
AL1G40330 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 3.0e-15 85.1 58 67.2
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 3.0e-15 85.1 80 55.0
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 4.0e-15 84.7 95 49.5
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 8.8e-15 83.6 80 52.5
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 2.0e-14 82.4 82 51.2
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 2.0e-14 82.4 74 58.1
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 2.0e-14 82.4 91 50.5
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 3.4e-14 81.6 84 53.6
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 4.4e-14 81.3 77 55.8
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 4.4e-14 81.3 77 55.8
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 4.4e-14 81.3 75 57.3
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 4.4e-14 81.3 75 57.3
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 5.7e-14 80.9 61 67.2
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 5.7e-14 80.9 75 57.3
AT1G24577 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 7.5e-14 80.5 52 71.2
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 7.5e-14 80.5 81 54.3
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 7.5e-14 80.5 77 53.2
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 7.5e-14 80.5 59 62.7
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 1.3e-13 79.7 78 55.1
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 1.3e-13 79.7 77 54.5
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 1.3e-13 79.7 77 51.9
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 2.8e-13 78.6 71 57.7
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 3.7e-13 78.2 90 46.7
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 6.3e-13 77.4 71 56.3
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 8.3e-13 77.0 73 53.4
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 8.3e-13 77.0 52 67.3
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 1.1e-12 76.6 76 53.9
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 1.8e-12 75.9 82 53.7
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 2.4e-12 75.5 61 62.3
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 2.4e-12 75.5 77 49.4
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 2.4e-12 75.5 69 56.5
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 4.1e-12 74.7 89 47.2
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 5.4e-12 74.3 87 44.8
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 5.4e-12 74.3 87 48.3
DCAR_026511 Daucus carota HOM05D007247 ORTHO05D009208 5.4e-12 74.3 93 46.2
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 5.4e-12 74.3 75 53.3
Actinidia15099 Actinidia chinensis HOM05D000233 ORTHO05D000020 7.0e-12 73.9 79 48.1
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 7.0e-12 73.9 93 44.1
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 7.0e-12 73.9 91 47.3
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 7.0e-12 73.9 101 43.6
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 9.2e-12 73.6 81 50.6
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 9.2e-12 73.6 85 50.6
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 1.2e-11 73.2 85 51.8
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 1.6e-11 72.8 98 42.9
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 2.0e-11 72.4 84 45.2
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 2.7e-11 72.0 95 48.4
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 2.7e-11 72.0 76 50.0
TPR.G17749 Trifolium pratense HOM05D007247 ORTHO05D009208 3.5e-11 71.6 79 55.7
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 3.5e-11 71.6 86 47.7
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 4.5e-11 71.2 65 58.5
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 7.8e-11 70.5 65 53.8
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 7.8e-11 70.5 66 57.6
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 1.7e-10 69.3 43 74.4
HanXRQChr17g0569581 Helianthus annuus HOM05D007247 ORTHO05D009208 2.9e-10 68.6 65 56.9
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 5.0e-10 67.8 74 59.5
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 5.0e-10 67.8 72 52.8
Rhsim12G0040300 Rhododendron simsii HOM05D007247 ORTHO05D009208 1.9e-09 65.9 64 57.8
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 1.9e-09 65.9 72 51.4
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 1.9e-09 65.9 65 52.3
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 2.5e-09 65.5 51 62.7
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 3.3e-09 65.1 40 75.0
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 4.3e-09 64.7 51 60.8
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 5.6e-09 64.3 65 58.5
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 5.6e-09 64.3 71 53.5
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 5.6e-09 64.3 42 66.7
AUR62005467 Chenopodium quinoa HOM05D007247 ORTHO05D009208 9.5e-09 63.5 63 55.6
Manes.13G023600 Manihot esculenta HOM05D007247 ORTHO05D009208 1.2e-08 63.2 86 39.5
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 1.2e-08 63.2 87 42.5
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 2.8e-08 62.0 43 72.1
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 2.8e-08 62.0 43 72.1
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 2.8e-08 62.0 63 54.0
RcHm_v2.0_Chr4g0433081 Rosa chinensis HOM05D007247 ORTHO05D009208 2.8e-08 62.0 81 45.7
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 2.8e-08 62.0 72 47.2
FAN22G0007 Fragaria x ananassa HOM05D007247 ORTHO05D009208 3.6e-08 61.6 75 45.3
FAN22G1782 Fragaria x ananassa HOM05D007247 ORTHO05D009208 3.6e-08 61.6 75 45.3
FvH4_4g25640 Fragaria vesca HOM05D007247 ORTHO05D009208 4.7e-08 61.2 78 44.9
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 4.7e-08 61.2 66 53.0
ECA234G3809 Erigeron canadensis HOM05D007247 ORTHO05D009208 8.0e-08 60.5 59 61.0
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 8.0e-08 60.5 78 44.9
TAR636G3342 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.0e-07 60.1 67 50.7
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 1.4e-07 59.7 85 45.9
FAN17G2797 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.8e-07 59.3 79 41.8
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 1.8e-07 59.3 50 58.0
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 2.3e-07 58.9 62 54.8
FAN07G0181 Fragaria x ananassa HOM05D007247 ORTHO05D009208 3.0e-07 58.5 52 53.8
PSO063G6114 Papaver somniferum HOM05D007247 ORTHO05D009208 3.0e-07 58.5 48 66.7
Sc04g0009510 Simmondsia chinensis HOM05D007247 ORTHO05D009208 3.0e-07 58.5 99 42.4
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 4.0e-07 58.2 69 49.3
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 4.0e-07 58.2 60 50.0
PSO754G0004 Papaver somniferum HOM05D007247 ORTHO05D009208 4.0e-07 58.2 78 47.4
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 4.0e-07 58.2 55 56.4
unitig_22.g5530 Utricularia gibba HOM05D007247 ORTHO05D009208 4.0e-07 58.2 51 58.8
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 5.2e-07 57.8 55 60.0
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 5.2e-07 57.8 58 48.3
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 5.2e-07 57.8 67 47.8
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 5.2e-07 57.8 49 59.2
TAR636G3092 Trochodendron aralioides HOM05D007247 ORTHO05D009208 5.2e-07 57.8 77 39.0
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 6.8e-07 57.4 57 49.1
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 6.8e-07 57.4 49 59.2
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 8.9e-07 57.0 58 51.7
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 8.9e-07 57.0 87 37.9
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 1.2e-06 56.6 73 46.6
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 1.2e-06 56.6 66 47.0
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 1.2e-06 56.6 72 44.4
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 1.2e-06 56.6 69 43.5
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 1.5e-06 56.2 47 57.4
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 2.0e-06 55.8 67 50.7
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 2.0e-06 55.8 83 45.8
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 2.6e-06 55.5 69 46.4
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.6e-06 55.5 58 50.0
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.6e-06 55.5 58 50.0
Lsat_1_v5_gn_9_89061 Lactuca sativa HOM05D007247 ORTHO05D009208 2.6e-06 55.5 53 52.8
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 2.6e-06 55.5 70 47.1
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 2.6e-06 55.5 70 47.1
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 3.4e-06 55.1 74 41.9
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 4.4e-06 54.7 111 35.1
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 4.4e-06 54.7 58 55.2
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 4.4e-06 54.7 77 41.6
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 4.4e-06 54.7 88 39.8
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 5.7e-06 54.3 58 50.0
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 5.7e-06 54.3 49 55.1
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 5.7e-06 54.3 66 48.5
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 7.5e-06 53.9 52 57.7
Sed0018286 Sechium edule HOM05D008067 ORTHO05D010226 7.5e-06 53.9 77 42.9
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 9.8e-06 53.5 59 49.2
Peaxi162Scf01069g00212 Petunia axillaris HOM05D020786 ORTHO05D020320 9.8e-06 53.5 53 45.3


User provided reference genes

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