Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 2.3e-57 225.3 111 100.0
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 1.4e-19 99.8 95 62.1
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 1.9e-19 99.4 107 54.2
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 2.1e-18 95.9 109 55.0
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 2.1e-18 95.9 109 56.9
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 2.7e-18 95.5 107 54.2
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 1.0e-17 93.6 109 56.0
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 1.0e-17 93.6 107 53.3
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 3.9e-17 91.7 103 50.5
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 1.9e-16 89.4 103 50.5
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 1.9e-16 89.4 103 50.5
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 9.7e-16 87.0 103 49.5
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 9.7e-16 87.0 103 49.5
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 9.7e-16 87.0 103 49.5
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 2.0e-13 79.3 117 41.9
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 3.4e-13 78.6 106 44.3
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 7.6e-13 77.4 106 44.3
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 1.0e-12 77.0 114 42.1
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 1.4e-11 73.2 115 41.7
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 1.9e-11 72.8 126 37.3
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 3.2e-11 72.0 141 33.3
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 3.2e-11 72.0 114 38.6
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 4.2e-11 71.6 117 38.5
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 4.2e-11 71.6 114 39.5
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 4.2e-11 71.6 118 39.0
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 5.5e-11 71.2 129 37.2
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 5.5e-11 71.2 129 35.7
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 5.5e-11 71.2 106 40.6
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 9.4e-11 70.5 106 38.7
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 1.2e-10 70.1 125 34.4
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 1.6e-10 69.7 125 36.0
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 2.1e-10 69.3 117 35.9
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 2.1e-10 69.3 114 36.8
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 2.7e-10 68.9 101 42.6
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 2.7e-10 68.9 122 38.5
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 2.7e-10 68.9 130 34.6
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 3.6e-10 68.6 98 39.8
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 3.6e-10 68.6 114 36.8
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 4.6e-10 68.2 106 37.7
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 4.6e-10 68.2 114 36.8
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 4.6e-10 68.2 114 37.7
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 4.6e-10 68.2 117 39.3
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 6.1e-10 67.8 126 34.9
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 7.9e-10 67.4 117 35.0
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 1.0e-09 67.0 116 37.1
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 1.0e-09 67.0 115 39.1
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 1.0e-09 67.0 115 39.1
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 1.4e-09 66.6 98 40.8
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 1.8e-09 66.2 122 36.9
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 1.8e-09 66.2 117 35.9
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 1.8e-09 66.2 117 35.9
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 1.8e-09 66.2 123 35.8
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 2.3e-09 65.9 134 34.3
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 2.3e-09 65.9 126 34.9
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 3.0e-09 65.5 134 36.6
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 3.0e-09 65.5 134 36.6
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 3.9e-09 65.1 125 36.0
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 5.1e-09 64.7 134 33.6
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 8.8e-09 63.9 123 35.0
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 8.8e-09 63.9 106 40.6
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 1.1e-08 63.5 117 33.3
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 1.1e-08 63.5 117 35.0
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.5e-08 63.2 117 34.2
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.5e-08 63.2 117 35.0
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 1.9e-08 62.8 117 34.2
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 1.9e-08 62.8 129 33.3
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 2.5e-08 62.4 114 36.0
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 2.5e-08 62.4 116 36.2
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 3.3e-08 62.0 110 39.1
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 3.3e-08 62.0 98 36.7
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 5.7e-08 61.2 106 38.7
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 5.7e-08 61.2 106 37.7
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 5.7e-08 61.2 115 33.9
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 5.7e-08 61.2 106 37.7
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 7.4e-08 60.8 106 36.8
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 7.4e-08 60.8 106 36.8
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 7.4e-08 60.8 126 33.3
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 9.7e-08 60.5 115 32.2
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 9.7e-08 60.5 106 35.8
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 1.3e-07 60.1 106 36.8
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 1.3e-07 60.1 106 36.8
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 2.8e-07 58.9 113 34.5
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 2.8e-07 58.9 128 32.8
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 2.8e-07 58.9 106 34.9
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 6.3e-07 57.8 98 38.8
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 1.4e-06 56.6 108 36.1
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 1.4e-06 56.6 105 33.3
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 5.3e-06 54.7 121 30.6
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 6.9e-06 54.3 94 34.0
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 9.1e-06 53.9 93 35.5


User provided reference genes

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