Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 3.8e-180 634.8 342 100.0
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 2.9e-127 459.1 317 84.2
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 4.9e-127 458.4 289 90.0
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 8.4e-127 457.6 289 89.6
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 1.5e-123 446.8 242 88.0
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.5e-123 446.8 287 87.1
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 2.4e-121 439.5 242 86.8
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 3.1e-121 439.1 287 86.1
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 2.0e-120 436.4 242 87.6
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 4.9e-119 431.8 319 80.6
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 8.4e-119 431.0 319 80.6
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 1.2e-117 427.2 322 79.8
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 2.1e-117 426.4 318 79.9
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 1.0e-116 424.1 320 79.7
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.3e-116 422.9 301 81.1
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 8.7e-116 421.0 286 82.5
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 2.6e-112 409.5 303 75.9
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 9.3e-110 401.0 288 79.9
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 1.8e-108 396.7 334 70.4
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 3.9e-108 395.6 353 70.3
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 3.9e-108 395.6 289 79.2
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 6.7e-108 394.8 356 69.4
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 6.7e-108 394.8 288 77.8
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.5e-107 392.9 286 78.7
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 3.3e-107 392.5 291 82.1
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 4.3e-107 392.1 288 77.1
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 4.8e-106 388.7 296 75.3
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 4.8e-106 388.7 286 78.3
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 3.1e-105 386.0 288 78.1
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 4.0e-105 385.6 327 69.4
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 5.3e-105 385.2 290 77.2
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 6.9e-105 384.8 286 75.5
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 6.9e-105 384.8 287 75.3
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 9.0e-105 384.4 288 75.3
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.2e-104 384.0 286 75.2
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.5e-104 383.6 286 75.5
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 2.6e-104 382.9 288 75.7
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 4.5e-104 382.1 326 68.7
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 5.8e-104 381.7 288 77.1
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 7.6e-104 381.3 287 78.0
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 2.2e-103 379.8 312 70.8
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 2.9e-103 379.4 311 72.7
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.9e-103 379.4 288 76.4
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 6.5e-103 378.3 297 73.7
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.5e-103 378.3 290 74.8
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.1e-102 377.5 288 75.0
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.9e-102 376.7 286 76.6
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.5e-102 376.3 326 70.9
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 2.5e-102 376.3 288 75.7
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 2.5e-102 376.3 288 75.7
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 1.6e-101 373.6 288 75.3
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.6e-101 373.6 303 72.6
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 7.9e-101 371.3 292 72.6
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.0e-100 370.9 288 73.6
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.3e-100 369.8 290 75.5
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 2.3e-100 369.8 310 71.6
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 3.0e-100 369.4 290 73.1
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 5.1e-100 368.6 287 74.2
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 6.7e-100 368.2 288 73.6
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 8.7e-100 367.9 241 73.9
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 1.5e-99 367.1 276 76.4
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 7.4e-99 364.8 289 74.0
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 7.4e-99 364.8 290 74.5
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 9.7e-99 364.4 288 72.2
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.6e-98 363.6 288 71.9
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.6e-98 363.6 337 65.3
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 2.8e-98 362.8 288 73.6
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 8.2e-98 361.3 288 71.9
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 8.2e-98 361.3 288 71.9
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 8.2e-98 361.3 241 71.4
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.4e-97 359.8 288 70.8
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 2.4e-97 359.8 285 73.3
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 5.3e-97 358.6 304 69.7
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 9.0e-97 357.8 286 73.4
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 3.4e-96 355.9 224 75.9
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 1.0e-95 354.4 286 72.4
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 1.3e-95 354.0 290 72.1
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 1.7e-95 353.6 286 72.4
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.2e-95 353.2 288 70.8
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 6.5e-95 351.7 292 71.9
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 6.5e-95 351.7 284 72.5
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.1e-94 350.9 243 71.2
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 1.9e-94 350.1 243 70.0
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.5e-94 349.7 321 68.8
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 7.2e-94 348.2 290 71.4
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 9.3e-94 347.8 260 68.1
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.6e-93 347.1 243 72.0
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.1e-93 346.7 321 67.6
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 4.6e-93 345.5 289 70.2
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 1.8e-92 343.6 360 60.8
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 2.3e-92 343.2 243 70.8
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 1.5e-91 340.5 288 72.2
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 4.3e-91 339.0 288 70.1
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 3.1e-89 332.8 288 69.4
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 2.0e-88 330.1 287 69.7
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 2.6e-88 329.7 288 68.4
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 2.6e-88 329.7 292 68.8
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 4.5e-88 328.9 295 69.5
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.3e-87 327.4 295 69.2
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 8.5e-87 324.7 227 67.8
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.1e-86 324.3 286 68.5
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 2.5e-86 323.2 287 67.6
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 1.2e-85 320.9 211 72.0
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 4.7e-85 318.9 289 66.8
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 4.7e-85 318.9 213 74.2
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 3.9e-84 315.8 292 67.8
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.7e-82 309.3 292 65.1
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 1.2e-80 304.3 240 62.9
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 4.5e-80 302.4 235 65.5
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.0e-79 301.2 278 67.3
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 6.5e-79 298.5 293 63.8
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 8.5e-79 298.1 241 63.5
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 1.1e-78 297.7 225 63.1
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 2.5e-78 296.6 244 64.3
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 2.1e-77 293.5 229 66.8
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.0e-76 291.2 289 64.4
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 1.1e-73 281.2 321 57.6
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 4.5e-72 275.8 245 70.2
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 8.5e-71 271.6 197 69.0
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 1.5e-70 270.8 243 59.7
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.9e-70 270.4 229 72.5
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 4.2e-70 269.2 233 72.5
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.2e-67 261.2 247 57.1
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 5.9e-64 248.8 247 54.7
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 1.7e-63 247.3 200 63.0
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.2e-63 246.9 229 67.2
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 8.5e-63 245.0 241 58.5
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 2.5e-62 243.4 238 58.8
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 3.2e-62 243.0 213 61.5
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 2.6e-59 233.4 202 59.4
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.1e-54 218.0 249 50.6
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 4.9e-42 176.0 157 56.1
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 1.2e-40 171.4 259 54.4
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 6.0e-40 169.1 131 64.1
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 7.0e-33 145.6 240 40.0
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 1.2e-32 144.8 243 41.6
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 3.3e-30 136.7 247 38.1
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 1.5e-27 127.9 253 36.0
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 3.4e-27 126.7 225 38.7
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 2.4e-25 120.6 224 36.6
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 4.1e-25 119.8 222 37.4
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 2.1e-24 117.5 184 44.0
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.1e-24 117.5 227 35.2
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 2.7e-24 117.1 54 98.1
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.3e-23 114.8 237 36.3
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 2.3e-23 114.0 227 34.8
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 3.0e-23 113.6 236 36.4
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 1.9e-22 110.9 234 35.5
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.9e-22 110.9 235 36.6
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.6e-21 107.8 235 35.3
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.6e-21 106.7 236 34.7
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.4e-20 104.8 242 33.9
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 6.8e-20 102.4 230 35.2
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 1.5e-19 101.3 243 35.0
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 5.8e-19 99.4 242 32.6
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.8e-18 96.7 237 32.1
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 4.9e-18 96.3 235 33.2
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 3.2e-17 93.6 56 75.0
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 3.2e-17 93.6 200 36.5
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.1e-16 90.9 251 31.5
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.9e-15 86.7 45 84.4
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 2.1e-13 80.9 168 35.7
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 6.2e-13 79.3 166 35.5
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 8.1e-13 79.0 172 33.1
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 4.0e-12 76.6 51 64.7
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 6.9e-12 75.9 171 35.7
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 2.6e-11 73.9 248 30.2
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 2.9e-10 70.5 162 32.7
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 4.9e-10 69.7 103 41.7
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 3.2e-09 67.0 51 54.9
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 1.6e-08 64.7 48 56.2
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 6.0e-08 62.8 253 25.3
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 3.0e-07 60.5 67 44.8
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.9e-07 60.1 34 61.8
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 5.1e-07 59.7 30 73.3


User provided reference genes

Program Settings