Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 2.6e-83 312.0 156 100.0
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 1.1e-81 306.6 155 98.1
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 4.1e-81 304.7 155 96.8
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 1.6e-80 302.8 155 96.1
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 2.1e-80 302.4 155 96.1
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 4.6e-80 301.2 155 95.5
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 7.8e-80 300.4 155 95.5
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 7.8e-80 300.4 155 95.5
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 1.3e-79 299.7 155 94.8
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 4.3e-78 294.7 152 94.7
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 9.5e-78 293.5 152 94.1
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 1.2e-77 293.1 152 94.7
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 1.2e-77 293.1 152 94.7
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 2.8e-77 292.0 152 94.1
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 4.7e-77 291.2 151 94.7
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 6.2e-77 290.8 155 89.7
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.8e-76 289.3 151 93.4
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 2.7e-72 275.4 155 86.5
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 3.5e-72 275.0 155 87.7
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.0e-71 273.5 155 86.5
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 1.7e-71 272.7 155 85.2
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.7e-71 272.7 155 87.1
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.7e-71 272.7 155 87.1
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 6.6e-71 270.8 155 85.8
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 6.6e-71 270.8 155 85.8
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 8.7e-71 270.4 155 86.5
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 8.7e-71 270.4 155 86.5
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 8.7e-71 270.4 155 84.5
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 1.1e-70 270.0 156 83.3
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.1e-70 270.0 155 85.2
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.1e-70 270.0 155 85.8
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 1.5e-70 269.6 155 85.2
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 1.5e-70 269.6 155 84.5
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 1.9e-70 269.2 155 85.2
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 2.5e-70 268.9 155 85.2
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 2.5e-70 268.9 155 85.8
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 3.3e-70 268.5 155 85.2
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 4.3e-70 268.1 155 85.2
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 4.3e-70 268.1 155 85.8
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 5.6e-70 267.7 155 83.2
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 5.6e-70 267.7 155 85.2
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 5.6e-70 267.7 155 84.5
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 7.3e-70 267.3 155 83.9
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 9.6e-70 266.9 155 84.5
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 9.6e-70 266.9 155 84.5
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 1.2e-69 266.5 155 84.5
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 1.2e-69 266.5 155 83.2
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 1.6e-69 266.2 155 83.9
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 1.6e-69 266.2 155 83.9
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 1.6e-69 266.2 155 83.9
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 2.1e-69 265.8 155 83.2
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 2.1e-69 265.8 155 83.9
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.1e-69 265.8 155 84.5
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 2.1e-69 265.8 155 84.5
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 2.1e-69 265.8 155 86.5
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 2.1e-69 265.8 155 86.5
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 2.1e-69 265.8 155 83.9
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 2.1e-69 265.8 155 83.9
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 3.6e-69 265.0 155 84.5
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 3.6e-69 265.0 155 83.2
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 3.6e-69 265.0 155 83.2
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 4.7e-69 264.6 151 86.1
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 4.7e-69 264.6 155 83.9
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 4.7e-69 264.6 155 83.2
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 4.7e-69 264.6 155 83.2
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 6.2e-69 264.2 155 83.9
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 8.1e-69 263.8 155 83.9
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 8.1e-69 263.8 155 83.2
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 8.1e-69 263.8 155 83.9
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 1.1e-68 263.5 151 85.4
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.4e-68 263.1 155 83.2
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 1.8e-68 262.7 155 81.9
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.8e-68 262.7 155 81.9
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 1.8e-68 262.7 155 83.9
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 4.0e-68 261.5 155 82.6
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 5.2e-68 261.2 152 84.2
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 5.2e-68 261.2 155 81.9
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 5.2e-68 261.2 154 82.5
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 6.9e-68 260.8 156 85.9
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 6.9e-68 260.8 152 83.6
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 9.0e-68 260.4 155 82.6
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 9.0e-68 260.4 152 83.6
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 1.5e-67 259.6 152 85.5
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.5e-67 259.6 155 81.3
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 2.0e-67 259.2 155 81.3
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 2.0e-67 259.2 152 83.6
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 3.4e-67 258.5 151 82.8
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 3.4e-67 258.5 152 84.2
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 4.4e-67 258.1 155 83.9
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 5.8e-67 257.7 167 79.0
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 9.9e-67 256.9 155 80.0
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 9.9e-67 256.9 150 83.3
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 1.3e-66 256.5 172 76.2
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 1.4e-65 253.1 155 82.6
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 1.4e-65 253.1 155 79.4
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 9.3e-65 250.4 155 77.4
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 1.3e-63 246.5 175 72.0
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 1.4e-60 236.5 151 80.1
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 1.5e-59 233.0 181 68.5
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 4.5e-59 231.5 117 94.0
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 9.9e-59 230.3 155 77.4
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 4.2e-57 224.9 126 84.1
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.2e-56 223.4 132 82.6
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.6e-56 223.0 132 82.6
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 6.7e-55 217.6 125 81.6
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 2.8e-53 212.2 155 68.4
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 2.4e-52 209.1 122 81.1
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 1.2e-51 206.8 154 68.8
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 1.9e-49 199.5 154 68.8
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 1.9e-46 189.5 164 64.0
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 1.6e-45 186.4 103 87.4
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 3.1e-44 182.2 101 85.1
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 2.0e-43 179.5 100 84.0
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 5.8e-43 177.9 157 55.4
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 5.5e-41 171.4 156 53.2
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 3.5e-40 168.7 176 56.2
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 1.3e-39 166.8 159 52.8
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 4.3e-38 161.8 153 57.5
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 5.5e-33 144.8 127 59.1
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.2e-32 143.7 78 87.2
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 4.6e-32 141.7 78 87.2
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 1.4e-31 140.2 78 85.9
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 3.9e-31 138.7 78 84.6
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 3.1e-28 129.0 65 93.8
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 4.5e-27 125.2 73 82.2
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 2.2e-26 122.9 87 71.3
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 3.2e-25 119.0 68 80.9
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 7.9e-24 114.4 65 84.6
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.3e-23 112.8 65 83.1
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 1.5e-22 110.2 77 75.3
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.0e-19 99.8 70 71.4
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 1.5e-14 83.6 45 86.7
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 5.7e-14 81.6 65 67.7
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 7.7e-11 71.2 49 75.5
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 3.2e-09 65.9 159 29.6
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 4.2e-09 65.5 159 30.2
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 4.2e-09 65.5 157 30.6
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.6e-08 63.5 159 29.6
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 2.1e-08 63.2 159 28.3
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 1.4e-07 60.5 158 30.4
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 7.5e-06 54.7 159 27.0


User provided reference genes

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