Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 5.7e-46 187.2 93 100.0
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 7.8e-27 123.6 96 66.7
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 1.3e-26 122.9 96 68.8
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 1.3e-26 122.9 96 68.8
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.3e-26 122.9 96 67.7
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 5.1e-26 120.9 96 65.6
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 6.6e-26 120.6 96 67.7
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 1.1e-25 119.8 96 66.7
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.1e-25 119.8 103 63.1
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.5e-25 118.6 108 63.0
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 4.3e-25 117.9 96 65.6
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 4.3e-25 117.9 96 65.6
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.1e-24 115.5 101 63.4
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 1.4e-23 112.8 100 61.0
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 1.8e-23 112.5 103 61.2
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 1.8e-23 112.5 103 61.2
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.8e-23 112.5 96 62.5
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 3.1e-23 111.7 100 61.0
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 4.0e-23 111.3 100 61.0
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 5.2e-23 110.9 103 61.2
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.6e-22 108.6 97 60.8
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 4.4e-22 107.8 112 56.2
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.2e-21 105.5 97 61.9
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 1.4e-20 102.8 95 63.2
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 9.2e-20 100.1 93 59.1
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.9e-18 94.7 99 51.5
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.9e-18 94.7 99 51.5
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 5.1e-18 94.4 91 51.6
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 6.6e-18 94.0 102 54.9
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 4.3e-17 91.3 111 45.9
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 5.6e-17 90.9 112 46.4
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 5.6e-17 90.9 107 45.8
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 5.6e-17 90.9 107 45.8
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 5.6e-17 90.9 108 48.1
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 2.1e-16 89.0 97 51.5
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.8e-16 88.6 99 48.5
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 3.6e-16 88.2 106 45.3
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 3.6e-16 88.2 97 51.5
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 4.7e-16 87.8 95 47.4
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 6.2e-16 87.4 105 44.8
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 8.1e-16 87.0 95 45.3
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 1.8e-15 85.9 122 45.9
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 1.8e-15 85.9 100 46.0
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 3.1e-15 85.1 98 50.0
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 3.1e-15 85.1 98 50.0
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 5.2e-15 84.3 112 43.8
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 5.2e-15 84.3 105 43.8
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 6.8e-15 84.0 106 44.3
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 8.9e-15 83.6 104 47.1
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 1.2e-14 83.2 106 43.4
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 1.2e-14 83.2 105 43.8
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 1.5e-14 82.8 107 43.0
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.5e-14 82.8 107 42.1
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.0e-14 82.4 104 46.2
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.6e-14 82.0 96 45.8
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 3.4e-14 81.6 96 43.8
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 3.4e-14 81.6 95 44.2
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 5.8e-14 80.9 110 39.1
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 7.6e-14 80.5 96 42.7
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 7.6e-14 80.5 95 46.3
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 9.9e-14 80.1 113 45.1
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 9.9e-14 80.1 113 45.1
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 9.9e-14 80.1 113 45.1
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 1.7e-13 79.3 104 47.1
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 1.7e-13 79.3 92 43.5
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.2e-13 79.0 106 45.3
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 2.9e-13 78.6 123 40.7
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.9e-13 78.6 102 44.1
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 3.8e-13 78.2 96 42.7
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 4.9e-13 77.8 102 40.2
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 4.9e-13 77.8 104 41.3
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 1.1e-12 76.6 120 40.0
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.4e-12 76.3 95 47.4
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 1.4e-12 76.3 92 42.4
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.9e-12 75.9 99 42.4
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 1.9e-12 75.9 95 44.2
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 1.9e-12 75.9 91 41.8
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 2.4e-12 75.5 91 42.9
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.4e-12 75.5 110 43.6
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 2.4e-12 75.5 96 42.7
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 4.2e-12 74.7 104 41.3
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 5.4e-12 74.3 109 44.0
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 5.4e-12 74.3 95 43.2
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 9.3e-12 73.6 106 37.7
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 9.3e-12 73.6 97 37.1
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 1.2e-11 73.2 50 56.0
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.2e-11 73.2 105 41.0
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.6e-11 72.8 114 42.1
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.1e-11 72.4 108 40.7
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.1e-11 72.4 108 40.7
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 2.1e-11 72.4 100 39.0
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 2.7e-11 72.0 98 43.9
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.5e-11 71.6 116 39.7
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 3.5e-11 71.6 93 43.0
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 4.6e-11 71.2 90 42.2
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 4.6e-11 71.2 110 39.1
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 4.6e-11 71.2 98 42.9
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 4.6e-11 71.2 95 40.0
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 4.6e-11 71.2 97 37.1
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 6.0e-11 70.9 96 42.7
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 6.0e-11 70.9 109 37.6
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 6.0e-11 70.9 110 39.1
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 7.8e-11 70.5 94 42.6
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 7.8e-11 70.5 94 42.6
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 7.8e-11 70.5 111 42.3
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.0e-10 70.1 111 43.2
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.0e-10 70.1 108 37.0
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.7e-10 69.3 91 42.9
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 1.7e-10 69.3 103 40.8
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.0e-10 68.6 117 39.3
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.0e-10 68.6 117 39.3
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 3.0e-10 68.6 110 38.2
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 3.0e-10 68.6 105 39.0
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.0e-10 68.6 114 39.5
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 3.9e-10 68.2 88 38.6
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 6.6e-10 67.4 116 36.2
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 8.7e-10 67.0 93 40.9
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 8.7e-10 67.0 93 38.7
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.5e-09 66.2 93 39.8
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.5e-09 66.2 108 38.9
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.9e-09 65.9 108 40.7
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.5e-09 65.5 95 37.9
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 2.5e-09 65.5 94 43.6
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.5e-09 65.5 108 39.8
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 7.3e-09 63.9 106 41.5
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 7.3e-09 63.9 96 38.5
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 1.6e-08 62.8 101 34.7
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 2.1e-08 62.4 97 38.1
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 3.6e-08 61.6 98 41.8
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.8e-08 61.2 95 42.1
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 4.8e-08 61.2 97 40.2
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 8.1e-08 60.5 102 39.2
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 1.8e-07 59.3 86 37.2
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 1.8e-07 59.3 38 55.3
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 2.4e-07 58.9 102 37.3
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 1.2e-06 56.6 75 36.0
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 2.6e-06 55.5 93 39.8
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 2.6e-06 55.5 90 33.3
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 5.8e-06 54.3 108 34.3


User provided reference genes

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