Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 1.8e-45 185.7 99 100.0
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 1.0e-32 143.3 105 75.2
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 3.6e-30 134.8 105 74.3
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 1.8e-29 132.5 100 75.0
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 5.2e-29 131.0 106 69.8
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 6.8e-29 130.6 106 67.9
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 5.7e-28 127.5 101 71.3
BolC9t59818H Brassica oleracea HOM05D008756 ORTHO05D003415 1.3e-27 126.3 106 66.0
BcaC06g32356 Brassica carinata HOM05D008756 ORTHO05D003415 1.0e-24 116.7 106 66.0
A10p30210 Brassica napus HOM05D008756 ORTHO05D003415 3.3e-23 111.7 106 60.4
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.1e-21 106.7 100 59.0
C09p70620 Brassica napus HOM05D008756 ORTHO05D003415 3.4e-20 101.7 106 56.6
BraA10t45059Z Brassica rapa HOM05D008756 ORTHO05D003415 3.4e-20 101.7 106 56.6
BolC9t59806H Brassica oleracea HOM05D008756 ORTHO05D003415 6.4e-19 97.4 79 67.1
BolC9t59816H Brassica oleracea HOM05D008756 ORTHO05D003415 3.2e-18 95.1 79 65.8
BolC9t59813H Brassica oleracea HOM05D008756 ORTHO05D003415 9.2e-18 93.6 79 64.6
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 1.6e-17 92.8 104 51.9
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 2.7e-17 92.0 107 49.5
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 4.6e-17 91.3 104 51.9
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 4.6e-17 91.3 107 49.5
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 7.8e-17 90.5 107 50.5
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 1.3e-16 89.7 100 51.0
A10p09330 Brassica napus HOM05D008756 ORTHO05D003415 1.7e-16 89.4 62 71.0
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 2.3e-16 89.0 101 49.5
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.9e-16 88.2 107 48.6
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 3.9e-16 88.2 107 51.4
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 8.6e-16 87.0 102 52.9
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.1e-15 86.7 107 48.6
BolC9t59804H Brassica oleracea HOM05D008756 ORTHO05D003415 1.5e-15 86.3 81 60.5
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 1.5e-15 86.3 102 51.0
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.5e-15 86.3 103 48.5
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 1.9e-15 85.9 107 45.8
BraA10t43000Z Brassica rapa HOM05D008756 ORTHO05D003415 3.3e-15 85.1 64 70.3
BraA10t43004Z Brassica rapa HOM05D008756 ORTHO05D003415 3.3e-15 85.1 64 70.3
A10p09270 Brassica napus HOM05D008756 ORTHO05D003415 4.3e-15 84.7 64 68.8
BraA10t45055Z Brassica rapa HOM05D008756 ORTHO05D003415 9.5e-15 83.6 68 66.2
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 9.5e-15 83.6 105 46.7
BraA10t43008Z Brassica rapa HOM05D008756 ORTHO05D003415 1.2e-14 83.2 64 68.8
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 1.6e-14 82.8 102 48.0
BolC9t59814H Brassica oleracea HOM05D008756 ORTHO05D003415 1.6e-14 82.8 57 73.7
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 1.6e-14 82.8 101 50.5
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 1.6e-14 82.8 102 47.1
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 1.6e-14 82.8 102 47.1
A10p09190 Brassica napus HOM05D008756 ORTHO05D003415 2.1e-14 82.4 64 67.2
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 2.1e-14 82.4 102 49.0
A10p30190 Brassica napus HOM05D008756 ORTHO05D003415 3.6e-14 81.6 64 65.6
C09p70600 Brassica napus HOM05D008756 ORTHO05D003415 3.6e-14 81.6 64 65.6
BraA10t45057Z Brassica rapa HOM05D008756 ORTHO05D003415 3.6e-14 81.6 64 65.6
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 3.6e-14 81.6 95 48.4
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 3.6e-14 81.6 95 48.4
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 3.6e-14 81.6 95 48.4
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 4.7e-14 81.3 100 48.0
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 6.2e-14 80.9 102 47.1
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 8.1e-14 80.5 107 47.7
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.1e-13 80.1 87 54.0
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 1.4e-13 79.7 102 47.1
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 1.4e-13 79.7 101 48.5
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.0e-13 78.2 107 43.9
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.0e-13 78.2 107 43.9
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 4.0e-13 78.2 107 43.9
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 4.0e-13 78.2 83 55.4
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 4.0e-13 78.2 102 45.1
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 5.2e-13 77.8 102 44.1
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 6.8e-13 77.4 107 44.9
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 8.9e-13 77.0 102 47.1
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 8.9e-13 77.0 102 43.1
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 1.2e-12 76.6 102 46.1
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 1.5e-12 76.3 97 43.3
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 1.5e-12 76.3 102 44.1
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.5e-12 76.3 84 52.4
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 2.6e-12 75.5 86 46.5
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.6e-12 75.5 103 46.6
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.6e-12 75.5 103 46.6
A10p09210 Brassica napus HOM05D008756 ORTHO05D003415 3.4e-12 75.1 65 63.1
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 3.4e-12 75.1 104 42.3
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 4.4e-12 74.7 86 47.7
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 5.8e-12 74.3 83 51.8
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 5.8e-12 74.3 102 42.2
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 5.8e-12 74.3 83 49.4
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 7.5e-12 73.9 100 45.0
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 9.9e-12 73.6 84 48.8
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 9.9e-12 73.6 102 42.2
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 9.9e-12 73.6 83 48.2
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 1.7e-11 72.8 102 43.1
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 2.2e-11 72.4 102 43.1
A10p09290 Brassica napus HOM05D008756 ORTHO05D003415 3.7e-11 71.6 65 61.5
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 3.7e-11 71.6 92 43.5
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.7e-11 71.6 102 40.2
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 3.7e-11 71.6 102 42.2
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 4.9e-11 71.2 102 41.2
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 6.4e-11 70.9 101 43.6
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 6.4e-11 70.9 102 39.2
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 6.4e-11 70.9 127 40.2
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 6.4e-11 70.9 83 49.4
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 8.3e-11 70.5 98 41.8
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 8.3e-11 70.5 102 43.1
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 1.1e-10 70.1 102 43.1
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 1.1e-10 70.1 83 45.8
BcaNung05843 Brassica carinata HOM05D008756 ORTHO05D003415 1.4e-10 69.7 57 64.9
BcaNung05844 Brassica carinata HOM05D008756 ORTHO05D003415 1.4e-10 69.7 57 64.9
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.4e-10 69.7 91 42.9
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.4e-10 69.7 92 42.4
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 1.4e-10 69.7 99 39.4
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.9e-10 69.3 102 40.2
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 2.4e-10 68.9 82 52.4
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 2.4e-10 68.9 102 42.2
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 2.4e-10 68.9 88 45.5
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 2.4e-10 68.9 88 45.5
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 3.2e-10 68.6 83 44.6
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 3.2e-10 68.6 94 40.4
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 3.2e-10 68.6 104 43.3
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 5.4e-10 67.8 113 40.7
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 7.1e-10 67.4 83 44.6
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 7.1e-10 67.4 99 41.4
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 7.1e-10 67.4 86 43.0
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 9.2e-10 67.0 102 38.2
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 9.2e-10 67.0 102 38.2
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 1.2e-09 66.6 86 46.5
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 1.2e-09 66.6 94 44.7
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 1.6e-09 66.2 102 42.2
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 1.6e-09 66.2 82 46.3
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 1.6e-09 66.2 97 41.2
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 2.1e-09 65.9 83 45.8
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 2.7e-09 65.5 102 38.2
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 2.7e-09 65.5 97 43.3
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 2.7e-09 65.5 96 38.5
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 3.5e-09 65.1 83 43.4
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 4.6e-09 64.7 96 40.6
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 4.6e-09 64.7 85 43.5
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 4.6e-09 64.7 97 39.2
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 6.0e-09 64.3 83 43.4
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 6.0e-09 64.3 96 40.6
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 6.0e-09 64.3 81 49.4
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 6.0e-09 64.3 83 45.8
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 7.8e-09 63.9 83 43.4
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 7.8e-09 63.9 96 39.6
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 7.8e-09 63.9 83 47.0
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 1.0e-08 63.5 96 42.7
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 1.0e-08 63.5 96 42.7
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 1.0e-08 63.5 96 39.6
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 1.0e-08 63.5 84 42.9
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 1.0e-08 63.5 102 36.3
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.0e-08 63.5 82 45.1
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.3e-08 63.2 83 43.4
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 1.3e-08 63.2 96 42.7
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 1.3e-08 63.2 96 42.7
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.3e-08 63.2 83 43.4
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 1.3e-08 63.2 88 46.6
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 1.7e-08 62.8 75 48.0
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 1.7e-08 62.8 96 41.7
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 1.7e-08 62.8 82 45.1
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 2.3e-08 62.4 96 39.6
C09p70580 Brassica napus HOM05D008756 ORTHO05D000925 2.3e-08 62.4 71 53.5
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 3.0e-08 62.0 96 40.6
A10p30170 Brassica napus HOM05D008756 ORTHO05D000925 3.0e-08 62.0 75 52.0
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 3.0e-08 62.0 86 41.9
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.9e-08 61.6 81 46.9
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.9e-08 61.6 81 46.9
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 3.9e-08 61.6 90 42.2
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 5.1e-08 61.2 83 42.2
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 8.6e-08 60.5 96 40.6
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 1.1e-07 60.1 105 42.9
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.1e-07 60.1 82 46.3
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.1e-07 60.1 95 41.1
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 1.5e-07 59.7 91 38.5
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 1.9e-07 59.3 83 41.0
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 1.9e-07 59.3 95 36.8
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 1.9e-07 59.3 102 34.3
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.9e-07 59.3 102 34.3
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.9e-07 59.3 102 34.3
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 1.9e-07 59.3 112 41.1
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 1.9e-07 59.3 118 34.7
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.9e-07 59.3 83 41.0
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 3.3e-07 58.5 84 44.0
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.3e-07 58.2 98 39.8
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 4.3e-07 58.2 89 44.9
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 5.6e-07 57.8 82 43.9
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 5.6e-07 57.8 93 41.9
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 9.5e-07 57.0 96 38.5
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 1.2e-06 56.6 90 40.0
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 1.6e-06 56.2 101 36.6
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 3.6e-06 55.1 100 38.0
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 3.6e-06 55.1 83 42.2


User provided reference genes

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