Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 0.0e+00 1744.2 895 100.0
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 0.0e+00 1333.9 900 76.9
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 0.0e+00 1332.4 897 77.5
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 0.0e+00 1317.4 899 75.8
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 0.0e+00 1301.2 899 75.5
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 0.0e+00 1238.0 898 71.8
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 0.0e+00 1234.9 898 73.5
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 0.0e+00 1225.7 904 70.9
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 0.0e+00 1222.6 904 70.8
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 0.0e+00 1209.9 902 70.3
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 0.0e+00 1209.1 902 70.3
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 0.0e+00 1205.7 902 70.0
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 0.0e+00 1202.6 905 70.4
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 0.0e+00 1190.3 898 71.0
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 0.0e+00 1127.9 892 66.8
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.9e-309 1064.7 905 66.0
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 5.4e-250 868.2 905 51.9
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.2e-249 867.1 902 52.7
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 5.6e-247 858.2 894 52.6
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 8.3e-243 844.3 897 51.5
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.1e-242 844.0 900 51.2
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.1e-241 839.7 559 77.1
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.1e-241 839.7 897 51.3
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 3.5e-241 839.0 897 51.3
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 6.0e-241 838.2 926 55.0
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.1e-237 825.9 900 50.3
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 4.9e-235 818.5 905 50.3
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.4e-234 817.0 905 50.5
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.5e-231 807.0 899 50.1
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.9e-231 806.6 901 50.3
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.5e-231 806.2 898 50.1
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.3e-231 805.4 903 49.6
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 5.6e-231 805.1 877 52.5
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 6.2e-230 801.6 912 49.3
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 6.2e-230 801.6 896 49.7
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 6.2e-230 801.6 903 49.2
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.2e-228 797.3 898 50.1
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 2.0e-228 796.6 900 49.2
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.4e-228 795.8 898 50.1
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.3e-227 793.9 903 49.1
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.9e-227 792.0 903 48.9
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.1e-226 790.8 946 47.5
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 7.8e-225 784.6 912 47.4
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 1.9e-223 780.0 771 55.3
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 2.5e-223 779.6 907 49.4
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 1.1e-221 774.2 903 49.2
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 9.0e-221 771.2 907 48.6
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 2.0e-220 770.0 903 47.4
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 7.6e-220 768.1 906 47.7
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 2.2e-219 766.5 905 47.4
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 6.4e-219 765.0 906 47.4
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 2.1e-217 760.0 903 48.2
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 3.5e-217 759.2 903 48.1
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 4.6e-217 758.8 904 48.3
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 6.6e-216 755.0 911 46.9
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 1.1e-215 754.2 903 48.0
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 7.3e-215 751.5 901 47.8
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.2e-212 744.2 918 47.1
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 4.5e-212 742.3 851 48.4
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 1.3e-211 740.7 771 52.7
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.7e-211 740.3 900 48.4
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 2.4e-210 736.5 931 47.0
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 5.4e-210 735.3 907 46.3
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 8.7e-208 728.0 896 45.1
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 9.6e-207 724.5 900 46.4
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 1.8e-205 720.3 903 46.1
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 9.0e-205 718.0 952 45.9
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 9.0e-205 718.0 907 45.2
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 5.8e-204 715.3 885 45.6
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 6.4e-203 711.8 897 44.9
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 2.5e-199 699.9 886 46.3
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 1.8e-197 693.7 904 44.8
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 1.2e-196 691.0 900 45.4
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 1.2e-196 691.0 906 43.3
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 2.9e-195 686.4 908 43.3
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 1.4e-194 684.1 904 43.7
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 5.5e-194 682.2 967 42.3
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.2e-193 681.0 874 46.7
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.6e-190 670.6 876 45.4
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 1.0e-187 661.4 725 49.0
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.1e-186 657.9 909 42.5
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.1e-186 657.9 908 43.3
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 2.3e-184 650.2 901 42.6
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 4.3e-183 646.0 875 42.7
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 2.8e-182 643.3 734 46.7
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 4.8e-182 642.5 914 42.1
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 9.1e-181 638.3 845 43.8
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 4.5e-180 636.0 970 39.8
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.0e-176 624.8 904 41.0
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 3.1e-173 613.2 908 40.6
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.5e-172 610.9 716 47.1
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 1.3e-171 607.8 675 50.8
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 6.5e-171 605.5 902 41.7
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 6.5e-171 605.5 716 46.8
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 3.2e-170 603.2 910 40.8
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 5.5e-170 602.4 928 39.7
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 4.7e-169 599.4 830 43.3
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.2e-162 576.6 873 39.9
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 7.5e-159 565.5 957 37.4
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 9.1e-157 558.5 722 45.3
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.0e-155 555.1 902 40.1
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 7.0e-149 532.3 670 44.9
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.5e-146 524.6 629 45.3
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 4.7e-145 519.6 696 44.1
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 2.6e-143 513.8 904 36.1
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 4.6e-140 503.1 568 53.2
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 1.4e-136 491.5 722 42.1
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.3e-134 485.0 697 43.9
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 4.4e-127 459.9 554 46.8
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.0e-123 448.7 744 38.2
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 3.6e-121 440.3 888 33.0
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 2.6e-119 434.1 637 39.6
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 4.9e-110 403.3 790 33.3
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 7.1e-109 399.4 694 36.0
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 9.6e-106 389.0 260 80.4
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 3.8e-94 350.5 777 33.3
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.5e-85 321.2 279 62.4
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 9.6e-82 309.3 260 63.8
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 4.1e-80 303.9 969 27.1
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.6e-79 301.2 248 65.7
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.2e-78 298.1 975 27.8
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.2e-78 298.1 975 27.8
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 6.1e-76 290.0 831 29.5
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 9.7e-74 282.7 596 33.4
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 3.7e-73 280.8 214 65.0
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 1.5e-71 275.4 725 27.9
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 2.2e-65 255.0 214 65.9
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 2.2e-62 245.0 518 31.1
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 3.8e-62 244.2 224 57.1
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 1.1e-61 242.7 213 63.8
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 6.3e-57 226.9 214 57.9
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 3.8e-54 217.6 355 37.2
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.9e-53 215.3 336 38.1
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 4.7e-52 210.7 761 26.8
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 2.3e-51 208.4 432 37.0
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 9.1e-48 196.4 334 39.5
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 5.2e-43 180.6 143 68.5
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 3.5e-39 167.9 350 33.1
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 4.5e-39 167.5 230 42.6
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.2e-38 165.2 234 39.7
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.2e-37 160.2 188 50.5
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 1.0e-35 156.4 187 47.1
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.2e-34 152.9 202 41.6
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 3.7e-33 147.9 139 60.4
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.5e-31 141.0 235 38.3
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 5.9e-31 140.6 114 63.2
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 1.0e-30 139.8 84 88.1
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 2.3e-30 138.7 211 37.9
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 3.6e-28 131.3 129 57.4
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 4.0e-27 127.9 171 46.8
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 8.9e-27 126.7 246 35.8
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.2e-26 126.3 190 37.4
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 8.3e-25 120.2 90 73.3
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 5.4e-24 117.5 406 26.1
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 4.3e-21 107.8 100 58.0
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 3.1e-19 101.7 92 50.0
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 4.0e-19 101.3 91 50.5
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 6.4e-17 94.0 128 41.4
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 3.0e-14 85.1 145 36.6
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.9e-13 82.4 108 44.4
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 2.1e-07 62.4 50 58.0
BcaC07g36816 Brassica carinata HOM05D004248 ORTHO05D004978 2.3e-06 58.9 49 65.3
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 3.0e-06 58.5 68 48.5


User provided reference genes

Program Settings