Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc508G10 Aethionema arabicum HOM05D004310 ORTHO05D005403 3.7e-94 348.2 177 100.0
Sp1g00950 Schrenkiella parvula HOM05D004310 ORTHO05D005403 2.2e-62 242.7 151 80.8
Sp6g01150 Schrenkiella parvula HOM05D004310 ORTHO05D005403 1.4e-61 240.0 155 78.7
THA.LOC104817053 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 4.1e-61 238.4 153 79.7
Thhalv10028668m.g Eutrema salsugineum HOM05D004310 ORTHO05D005403 1.6e-60 236.5 150 80.7
THA.LOC104801375 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 2.1e-60 236.1 151 79.5
Aa31LG5G960 Aethionema arabicum HOM05D004310 ORTHO05D005403 4.6e-60 235.0 153 79.1
A03p31750 Brassica napus HOM05D004310 ORTHO05D005403 6.6e-59 231.1 153 76.5
Carub.0006s3602 Capsella rubella HOM05D004310 ORTHO05D005403 6.6e-59 231.1 150 78.0
AL6G52400 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 9.5e-58 227.3 150 78.0
BraA03t12352Z Brassica rapa HOM05D004310 ORTHO05D005403 9.5e-58 227.3 150 76.7
C03p38780 Brassica napus HOM05D004310 ORTHO05D005403 1.2e-57 226.9 150 76.7
BcaC01g06834 Brassica carinata HOM05D004310 ORTHO05D005403 3.6e-57 225.3 150 76.0
BolC3t16153H Brassica oleracea HOM05D004310 ORTHO05D005403 1.4e-56 223.4 150 75.3
BcaB01g02305 Brassica carinata HOM05D004310 ORTHO05D005403 8.9e-56 220.7 153 73.9
A09p00270 Brassica napus HOM05D004310 ORTHO05D005403 3.4e-55 218.8 153 73.2
AT4G01000 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 7.6e-55 217.6 150 74.7
BraA09t35754Z Brassica rapa HOM05D004310 ORTHO05D005403 1.3e-54 216.9 153 72.5
BolC9t53025H Brassica oleracea HOM05D004310 ORTHO05D005403 2.9e-54 215.7 153 72.5
C09p00900 Brassica napus HOM05D004310 ORTHO05D005403 4.9e-54 214.9 153 72.5
CARHR249360 Cardamine hirsuta HOM05D004310 ORTHO05D005403 1.4e-53 213.4 150 74.0
Cpa.g.sc96.7 Carica papaya HOM05D004310 ORTHO05D005403 2.1e-52 209.5 153 68.0
Atru.chr5.660 Acer truncatum HOM05D004310 ORTHO05D005403 3.0e-51 205.7 153 66.7
Ciclev10020037m.g Citrus clementina HOM05D004310 ORTHO05D005403 1.5e-50 203.4 153 68.0
Cpa.g.sc148.40 Carica papaya HOM05D004310 ORTHO05D005403 8.1e-49 197.6 153 62.7
Potri.014G098100 Populus trichocarpa HOM05D004310 ORTHO05D005403 1.5e-47 193.4 154 63.6
Aa31LG1G10680 Aethionema arabicum HOM05D004310 ORTHO05D005403 2.0e-47 193.0 108 90.7
Sabra02G0142100 Salix brachista HOM05D004310 ORTHO05D005403 4.9e-46 188.3 154 61.7
TWI59G1199 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 4.9e-46 188.3 148 63.5
TWI14G0601 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 1.4e-45 186.8 150 63.3
Potri.002G170200 Populus trichocarpa HOM05D004310 ORTHO05D005403 2.4e-45 186.0 154 60.4
PGR042G3601 Punica granatum HOM05D004310 ORTHO05D005403 2.1e-44 183.0 148 63.5
Sabra14G0071900 Salix brachista HOM05D004310 ORTHO05D005403 6.0e-44 181.4 148 62.2
CiPaw.02G040300 Carya illinoinensis HOM05D004310 ORTHO05D005403 3.3e-42 175.6 154 61.7
ClCG06G001190 Citrullus lanatus HOM05D004310 ORTHO05D005403 4.3e-42 175.3 149 62.4
Duzib138G0762 Durio zibethinus HOM05D004310 ORTHO05D005403 7.3e-42 174.5 153 61.4
Manes.05G023500 Manihot esculenta HOM05D004310 ORTHO05D005403 7.3e-42 174.5 138 64.5
Thecc.01G343300 Theobroma cacao HOM05D004310 ORTHO05D005403 9.6e-42 174.1 153 60.1
Gohir.D12G115400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 1.3e-41 173.7 153 60.1
Gorai.008G124900 Gossypium raimondii HOM05D004310 ORTHO05D005403 1.3e-41 173.7 153 60.1
Cfa003806 Carpinus fangiana HOM05D004310 ORTHO05D005403 2.1e-41 172.9 158 59.5
Dinv35111 Davidia involucrata HOM05D004310 ORTHO05D005403 2.1e-41 172.9 153 60.1
Haze_15649 Corylus avellana HOM05D004310 ORTHO05D005403 2.8e-41 172.6 158 60.1
CsaV3_6G007120 Cucumis sativus L. HOM05D004310 ORTHO05D005403 2.8e-41 172.6 152 60.5
arahy.Tifrunner.gnm1.ann1.Z66XJ9 Arachis hypogaea HOM05D004310 ORTHO05D005403 4.8e-41 171.8 154 60.4
COL.COLO4_06292 Corchorus olitorius HOM05D004310 ORTHO05D005403 8.1e-41 171.0 151 60.9
MELO3C022416.2 Cucumis melo HOM05D004310 ORTHO05D005403 8.1e-41 171.0 152 60.5
arahy.Tifrunner.gnm1.ann1.BIP3BJ Arachis hypogaea HOM05D004310 ORTHO05D005403 1.1e-40 170.6 154 59.7
Eucgr.D02370 Eucalyptus grandis HOM05D004310 ORTHO05D005403 3.1e-40 169.1 134 63.4
Gorai.004G152000 Gossypium raimondii HOM05D004310 ORTHO05D005403 4.0e-40 168.7 153 58.8
Duzib133G1258 Durio zibethinus HOM05D004310 ORTHO05D005403 5.3e-40 168.3 153 59.5
Gohir.A08G125500 Gossypium hirsutum HOM05D004310 ORTHO05D005403 5.3e-40 168.3 153 58.8
Dinv32582 Davidia involucrata HOM05D004310 ORTHO05D005403 2.0e-39 166.4 153 57.5
Gohir.D08G146400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 2.6e-39 166.0 153 58.2
Sed0010710 Sechium edule HOM05D004310 ORTHO05D005403 2.6e-39 166.0 152 60.5
Lj1g0027458 Lotus japonicus HOM05D004310 ORTHO05D005403 3.4e-39 165.6 152 59.2
Glyma.19G255600 Glycine max HOM05D004310 ORTHO05D005403 7.6e-39 164.5 148 60.1
TAR375G0608 Trochodendron aralioides HOM05D004310 ORTHO05D005403 7.6e-39 164.5 143 60.8
Glyma.03G257300 Glycine max HOM05D004310 ORTHO05D005403 6.4e-38 161.4 148 58.8
TPR.G4733 Trifolium pratense HOM05D004310 ORTHO05D005403 1.4e-37 160.2 149 57.7
Lalb_Chr18g0044401 Lupinus albus HOM05D004310 ORTHO05D005403 3.2e-37 159.1 155 57.4
Prupe.2G187300 Prunus persica HOM05D004310 ORTHO05D005403 3.2e-37 159.1 151 57.6
QL04p061163 Quercus lobata HOM05D004310 ORTHO05D005403 3.2e-37 159.1 154 59.1
VMungo0540G1382 Vigna mungo HOM05D004310 ORTHO05D005403 3.2e-37 159.1 141 60.3
CANSAT56G1285 Cannabis sativa HOM05D004310 ORTHO05D005403 4.2e-37 158.7 158 55.7
Ca_09504_v3 Cicer arietinum L. HOM05D004310 ORTHO05D005403 5.4e-37 158.3 147 57.8
Phvul.006G112400 Phaseolus vulgaris HOM05D004310 ORTHO05D005403 9.3e-37 157.5 148 58.8
Aqoxy7G00105 Aquilegia oxysepala HOM05D004310 ORTHO05D005403 1.6e-36 156.8 141 57.4
MD07G1148800 Malus domestica HOM05D004310 ORTHO05D005403 2.1e-36 156.4 152 55.3
Lj7A501T50 Lonicera japonica HOM05D004310 ORTHO05D005403 6.0e-36 154.8 144 54.9
Lalb_Chr04g0261561 Lupinus albus HOM05D004310 ORTHO05D005403 6.0e-36 154.8 157 54.8
ATR0213G003 Amborella trichopoda HOM05D004310 ORTHO05D005403 7.9e-36 154.5 152 57.9
Medtr7g117320 Medicago truncatula HOM05D004310 ORTHO05D005403 7.9e-36 154.5 167 52.1
FvH4_7g16340 Fragaria vesca HOM05D004310 ORTHO05D005403 1.0e-35 154.1 155 54.8
FAN06G2059 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.0e-35 154.1 155 54.8
Psat3g002680 Pisum sativum HOM05D004310 ORTHO05D005403 1.3e-35 153.7 170 51.8
MD01G1080000 Malus domestica HOM05D004310 ORTHO05D005403 3.0e-35 152.5 152 53.9
FAN10G0275 Fragaria x ananassa HOM05D004310 ORTHO05D005403 3.9e-35 152.1 150 56.0
FAN10G2670 Fragaria x ananassa HOM05D004310 ORTHO05D005403 3.9e-35 152.1 150 56.0
FAN01G1347 Fragaria x ananassa HOM05D004310 ORTHO05D005403 5.1e-35 151.8 150 56.0
CDE10G0591 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 8.7e-35 151.0 143 55.9
CDE10G1323 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 8.7e-35 151.0 143 55.2
PSO384G0413 Papaver somniferum HOM05D004310 ORTHO05D005403 8.7e-35 151.0 149 56.4
FAN03G3179 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.9e-34 149.8 150 55.3
Actinidia10134 Actinidia chinensis HOM05D004310 ORTHO05D005403 2.5e-34 149.4 154 55.2
HanXRQChr06g0170681 Helianthus annuus HOM05D004310 ORTHO05D005403 2.5e-34 149.4 150 55.3
CSS0029608 Camellia sinensis var. sinensis HOM05D004310 ORTHO05D005403 4.3e-34 148.7 141 56.7
PSO339G6050 Papaver somniferum HOM05D004310 ORTHO05D005403 4.3e-34 148.7 148 56.1
Rhsim07G0004600 Rhododendron simsii HOM05D004310 ORTHO05D005403 7.3e-34 147.9 151 53.0
vmacro13157 Vaccinium macrocarpon HOM05D004310 ORTHO05D005403 7.3e-34 147.9 143 55.9
Sc01g0002750 Simmondsia chinensis HOM05D004310 ORTHO05D005403 9.6e-34 147.5 156 51.9
SGA_v2.0_scaffold43G16367 Striga asiatica HOM05D004310 ORTHO05D005403 1.6e-33 146.7 173 50.9
AUR62004485 Chenopodium quinoa HOM05D004310 ORTHO05D005403 2.1e-33 146.4 150 56.0
Hund27201 Selenicereus undatus HOM05D004310 ORTHO05D005403 4.8e-33 145.2 148 54.7
Lsat_1_v5_gn_7_1281 Lactuca sativa HOM05D004310 ORTHO05D005403 6.2e-33 144.8 157 51.6
CAN.G986.11 Capsicum annuum HOM05D004310 ORTHO05D005403 8.1e-33 144.4 148 55.4
EL10Ac1g00277 Beta vulgaris HOM05D004310 ORTHO05D005403 1.1e-32 144.1 150 54.7
MBI06_g08458_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 1.1e-32 144.1 157 51.0
Peaxi162Scf00786g00321 Petunia axillaris HOM05D004310 ORTHO05D005403 1.1e-32 144.1 147 54.4
Ah.05g179620 Amaranthus hybridus HOM05D004310 ORTHO05D005403 1.4e-32 143.7 150 54.0
RcHm_v2.0_Chr1g0359351 Rosa chinensis HOM05D004310 ORTHO05D005403 1.4e-32 143.7 158 51.3
Eucgr.L00085 Eucalyptus grandis HOM05D004310 ORTHO05D005403 2.4e-32 142.9 128 60.2
Nitab4.5_0004999g0060 Nicotiana tabacum HOM05D004310 ORTHO05D005403 2.4e-32 142.9 144 55.6
Nitab4.5_0000838g0210 Nicotiana tabacum HOM05D004310 ORTHO05D005403 6.9e-32 141.4 147 54.4
Cc02_g39270 Coffea canephora HOM05D004310 ORTHO05D005403 1.2e-31 140.6 175 46.9
Sopen01g039540 Solanum pennellii HOM05D004310 ORTHO05D005403 2.0e-31 139.8 176 48.9
SalBow3G2754 Salvia bowleyana HOM05D004310 ORTHO05D005403 2.6e-31 139.4 187 47.6
Solyc01g095790.4 Solanum lycopersicum HOM05D004310 ORTHO05D005403 2.6e-31 139.4 176 48.9
PGSC0003DMG400000104 Solanum tuberosum HOM05D004310 ORTHO05D005403 2.6e-31 139.4 176 48.3
Migut.N01550 Erythranthe guttata HOM05D004310 ORTHO05D005403 4.5e-31 138.7 162 48.8
Migut.O00903 Erythranthe guttata HOM05D004310 ORTHO05D005403 4.5e-31 138.7 162 48.8
AagrBONN_evm.TU.Sc2ySwM_344.4433 Anthoceros agrestis HOM05D004310 ORTHO05D005403 5.8e-31 138.3 154 51.3
DCAR_025250 Daucus carota HOM05D004310 ORTHO05D005403 9.9e-31 137.5 147 50.3
Mapoly0080s0014 Marchantia polymorpha HOM05D004310 ORTHO05D005403 9.9e-31 137.5 152 48.7
MSTRG.20902 Avicennia marina HOM05D004310 ORTHO05D005403 1.4e-29 133.7 187 44.4
SMO270G0076 Selaginella moellendorffii HOM05D004310 ORTHO05D005403 1.4e-29 133.7 144 50.7
AT3G06455 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 1.9e-29 133.3 125 56.0
MSTRG.17338 Avicennia marina HOM05D004310 ORTHO05D005403 2.4e-29 132.9 186 44.6
Zm00001eb156640 Zea mays HOM05D004310 ORTHO05D005403 2.1e-28 129.8 151 44.4
Pp3c22_11010 Physcomitrium patens HOM05D004310 ORTHO05D005403 4.6e-28 128.6 152 49.3
Zm00001eb360440 Zea mays HOM05D004310 ORTHO05D005403 4.6e-28 128.6 150 44.0
Os01g0681600 Oryza sativa ssp. japonica HOM05D004310 ORTHO05D005403 1.0e-27 127.5 149 45.0
Oeu008696.1 Olea europaea HOM05D004310 ORTHO05D005403 2.3e-27 126.3 198 40.9
unitig_62.g23796 Utricularia gibba HOM05D004310 ORTHO05D005403 2.3e-27 126.3 175 45.1
ECA236G2788 Erigeron canadensis HOM05D004310 ORTHO05D005403 1.5e-26 123.6 107 61.7
Nn1g01876 Nelumbo nucifera HOM05D004310 ORTHO05D005403 2.5e-26 122.9 78 78.2
MBI13_g41011_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 4.3e-26 122.1 153 46.4
Oeu004945.1 Olea europaea HOM05D004310 ORTHO05D005403 4.8e-25 118.6 89 68.5
CBR_g29554 Chara braunii HOM05D004310 ORTHO05D005403 6.2e-25 118.2 170 41.2
MCO02G408 Micromonas commoda HOM05D004310 ORTHO05D005403 1.6e-17 93.6 158 38.0
Lsat_1_v5_gn_8_60321 Lactuca sativa HOM05D004310 ORTHO05D005403 4.8e-17 92.0 60 75.0
Cre07.g322100 Chlamydomonas reinhardtii HOM05D000218 ORTHO05D000125 2.0e-15 86.7 141 39.0
arahy.Tifrunner.gnm1.ann1.FB4WK1 Arachis hypogaea HOM05D004310 ORTHO05D005403 1.3e-11 73.9 57 66.7
AUR62023468 Chenopodium quinoa HOM05D004310 ORTHO05D005403 2.2e-09 66.6 45 75.6
ATR1116G001 Amborella trichopoda HOM05D004310 ORTHO05D005403 6.3e-09 65.1 47 74.5
Actinidia20238 Actinidia chinensis HOM05D004310 ORTHO05D005403 3.1e-08 62.8 49 65.3
HPP92_024432 Vanilla planifolia HOM05D004310 ORTHO05D005403 9.0e-08 61.2 48 64.6
Aa31sc12G190 Aethionema arabicum HOM05D004310 ORTHO05D005403 7.7e-07 58.2 34 88.2


User provided reference genes

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