Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc48G30 Aethionema arabicum HOM05D010720 ORTHO05D009355 2.2e-140 502.3 259 100.0
AL2G26210 Arabidopsis lyrata HOM05D010720 ORTHO05D009355 1.1e-75 287.3 253 62.1
Thhalv10019017m.g Eutrema salsugineum HOM05D010720 ORTHO05D009355 5.6e-75 285.0 259 60.6
AT1G67540 Arabidopsis thaliana HOM05D010720 ORTHO05D009355 5.8e-72 275.0 248 61.7
CARHR060110 Cardamine hirsuta HOM05D010720 ORTHO05D009355 2.3e-68 263.1 268 58.2
Sp5g22550 Schrenkiella parvula HOM05D010720 ORTHO05D009355 4.8e-66 255.4 221 63.3
BcaB05g24293 Brassica carinata HOM05D010720 ORTHO05D009355 8.2e-66 254.6 242 58.7
BolC2t08453H Brassica oleracea HOM05D010720 ORTHO05D009355 4.5e-64 248.8 256 57.0
Carub.0002s1388 Capsella rubella HOM05D010720 ORTHO05D009355 7.6e-64 248.1 233 60.5
BcaC03g14845 Brassica carinata HOM05D010720 ORTHO05D009355 2.2e-63 246.5 242 57.9
C02p23110 Brassica napus HOM05D010720 ORTHO05D009355 3.8e-63 245.7 256 56.2
A02p14300 Brassica napus HOM05D010720 ORTHO05D009355 1.1e-62 244.2 242 57.0
BraA02t06491Z Brassica rapa HOM05D010720 ORTHO05D009355 1.1e-62 244.2 242 57.0
BcaNung05070 Brassica carinata HOM05D010720 ORTHO05D009355 1.9e-62 243.4 245 54.7
A07p34090 Brassica napus HOM05D010720 ORTHO05D009355 7.1e-62 241.5 245 55.1
C06p42700 Brassica napus HOM05D010720 ORTHO05D009355 1.8e-60 236.9 245 54.7
BolC6t39169H Brassica oleracea HOM05D010720 ORTHO05D009355 1.8e-60 236.9 245 54.7
BraA07t31035Z Brassica rapa HOM05D010720 ORTHO05D009355 6.7e-60 235.0 245 53.9
BcaB03g15187 Brassica carinata HOM05D010720 ORTHO05D009355 1.4e-57 227.3 245 52.2
THA.LOC104807888 Tarenaya hassleriana HOM05D010720 ORTHO05D009355 3.8e-47 192.6 245 46.9
Dinv10979 Davidia involucrata HOM05D007857 ORTHO05D009355 4.7e-21 105.9 164 37.2
Dinv14814 Davidia involucrata HOM05D007857 ORTHO05D009355 4.4e-19 99.4 186 34.9
Thecc.02G276200 Theobroma cacao HOM05D007857 ORTHO05D009355 1.7e-18 97.4 176 38.6
Atru.chr11.2290 Acer truncatum HOM05D007857 ORTHO05D009355 2.2e-18 97.1 208 34.6
Potri.008G177300 Populus trichocarpa HOM05D007857 ORTHO05D009355 3.7e-18 96.3 169 39.1
Sabra10G0047600 Salix brachista HOM05D007857 ORTHO05D009355 4.8e-18 95.9 156 39.1
CSS0005757 Camellia sinensis var. sinensis HOM05D007857 ORTHO05D009355 8.3e-18 95.1 250 29.2
TWI36G0032 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 1.1e-17 94.7 166 38.0
TWI36G1497 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 1.1e-17 94.7 166 38.0
TWI75G0924 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 1.4e-17 94.4 290 30.7
Actinidia20693 Actinidia chinensis HOM05D007857 ORTHO05D009355 2.4e-17 93.6 168 35.1
COL.COLO4_20347 Corchorus olitorius HOM05D007857 ORTHO05D009355 4.1e-17 92.8 277 31.0
Hma1.2p1_1239F.1_g269420 Hydrangea macrophylla HOM05D007857 ORTHO05D009355 5.4e-17 92.4 156 36.5
MD16G1115600 Malus domestica HOM05D007857 ORTHO05D009355 1.2e-16 91.3 273 31.5
QL03p054319 Quercus lobata HOM05D007857 ORTHO05D009355 2.7e-16 90.1 294 28.6
Ciclev10033758m.g Citrus clementina HOM05D007857 ORTHO05D009355 5.9e-16 89.0 317 27.8
Lalb_Chr07g0187361 Lupinus albus HOM05D007857 ORTHO05D009355 1.0e-15 88.2 303 27.7
Potri.010G057800 Populus trichocarpa HOM05D007857 ORTHO05D009355 2.9e-15 86.7 241 31.5
CiPaw.06G100500 Carya illinoinensis HOM05D007857 ORTHO05D009355 3.8e-15 86.3 214 31.3
MD13G1115600 Malus domestica HOM05D007857 ORTHO05D009355 5.0e-15 85.9 269 29.0
Haze_12382 Corylus avellana HOM05D007857 ORTHO05D009355 6.6e-15 85.5 252 27.0
Glyma.05G146200 Glycine max HOM05D007857 ORTHO05D009355 1.1e-14 84.7 154 35.1
Sc04g0010010 Simmondsia chinensis HOM05D007857 ORTHO05D009355 1.5e-14 84.3 209 32.1
Gohir.A03G127600 Gossypium hirsutum HOM05D007857 ORTHO05D009355 2.5e-14 83.6 157 35.7
TAR374G0584 Trochodendron aralioides HOM05D007857 ORTHO05D009355 2.5e-14 83.6 308 28.2
Prupe.1G231500 Prunus persica HOM05D007857 ORTHO05D009355 5.5e-14 82.4 300 28.3
Gohir.D02G151200 Gossypium hirsutum HOM05D007857 ORTHO05D009355 7.2e-14 82.0 157 35.7
Gorai.005G169600 Gossypium raimondii HOM05D007857 ORTHO05D009355 7.2e-14 82.0 157 35.7
PSO063G0898 Papaver somniferum HOM05D007857 ORTHO05D009355 7.2e-14 82.0 151 35.8
Eucgr.H04657 Eucalyptus grandis HOM05D007857 ORTHO05D009355 2.1e-13 80.5 265 26.4
Solyc04g045390.1 Solanum lycopersicum HOM05D007857 ORTHO05D009355 6.1e-13 79.0 153 33.3
PSO782G1056 Papaver somniferum HOM05D007857 ORTHO05D009355 8.0e-13 78.6 202 30.2
Phvul.002G175100 Phaseolus vulgaris HOM05D007857 ORTHO05D009355 1.8e-12 77.4 208 29.3
Rhsim12G0103100 Rhododendron simsii HOM05D007857 ORTHO05D009355 4.0e-12 76.3 153 34.6
Cfa009341 Carpinus fangiana HOM05D007857 ORTHO05D009355 5.2e-12 75.9 262 27.1
PSO357G0688 Papaver somniferum HOM05D007857 ORTHO05D009355 6.8e-12 75.5 150 36.0
TAR622G0135 Trochodendron aralioides HOM05D007857 ORTHO05D009355 1.5e-11 74.3 180 35.0
CsaV3_2G025390 Cucumis sativus L. HOM05D007857 ORTHO05D009355 2.0e-11 73.9 214 27.1
FAN07G0728 Fragaria x ananassa HOM05D007857 ORTHO05D009355 4.4e-11 72.8 173 33.5
SalBow2G3021 Salvia bowleyana HOM05D007857 ORTHO05D009355 4.4e-11 72.8 208 33.7
arahy.Tifrunner.gnm1.ann1.32T9N9 Arachis hypogaea HOM05D007857 ORTHO05D009355 5.7e-11 72.4 172 32.0
arahy.Tifrunner.gnm1.ann1.ZB6N55 Arachis hypogaea HOM05D007857 ORTHO05D009355 5.7e-11 72.4 172 32.0
RcHm_v2.0_Chr4g0430861 Rosa chinensis HOM05D007857 ORTHO05D009355 7.5e-11 72.0 161 34.8
Manes.13G017400 Manihot esculenta HOM05D007857 ORTHO05D009355 9.8e-11 71.6 190 30.5
Glyma.19G186500 Glycine max HOM05D007857 ORTHO05D009355 1.7e-10 70.9 208 29.3
arahy.Tifrunner.gnm1.ann1.AFM6H1 Arachis hypogaea HOM05D007857 ORTHO05D009355 3.7e-10 69.7 249 28.5
FvH4_4g24090 Fragaria vesca HOM05D007857 ORTHO05D009355 4.9e-10 69.3 176 33.0
FAN12G2990 Fragaria x ananassa HOM05D007857 ORTHO05D009355 6.3e-10 68.9 176 33.0
Sabra08G0135300 Salix brachista HOM05D007857 ORTHO05D009355 2.4e-09 67.0 161 32.9
Cpa.g.sc43.26 Carica papaya HOM05D007857 ORTHO05D009355 2.0e-08 63.9 273 28.2
Sed0006532 Sechium edule HOM05D007857 ORTHO05D009355 3.5e-08 63.2 209 28.2
Ca_18058_v3 Cicer arietinum L. HOM05D007857 ORTHO05D009355 1.0e-07 61.6 276 25.7
SGA_v2.0_scaffold9G04766 Striga asiatica HOM05D007857 ORTHO05D009355 1.0e-07 61.6 212 29.2
Psat7g078480 Pisum sativum HOM05D007857 ORTHO05D009355 1.3e-07 61.2 286 25.5
Aqoxy5G03443 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 2.3e-07 60.5 178 30.3
PGSC0003DMG400017971 Solanum tuberosum HOM05D007857 ORTHO05D009355 6.6e-07 58.9 176 26.7
Aqoxy3G01489 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 8.6e-07 58.5 220 26.4
Nn4g22377 Nelumbo nucifera HOM05D007857 ORTHO05D009355 1.1e-06 58.2 152 31.6
Sopen04g010360 Solanum pennellii HOM05D007857 ORTHO05D009355 2.5e-06 57.0 82 37.8
VMungo0251G2942 Vigna mungo HOM05D007857 ORTHO05D009355 2.5e-06 57.0 201 28.4
Cc11_g16750 Coffea canephora HOM05D007857 ORTHO05D009355 9.5e-06 55.1 99 35.4


User provided reference genes

Program Settings