Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc47G40 Aethionema arabicum HOM05D007751 ORTHO05D009813 9.3e-93 343.6 181 100.0
AL8G24030 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 4.5e-63 245.0 182 71.4
AT5G50030 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 1.0e-62 243.8 182 70.3
CARHR258630 Cardamine hirsuta HOM05D007751 ORTHO05D009813 2.1e-60 236.1 180 67.2
Thhalv10014776m.g Eutrema salsugineum HOM05D007751 ORTHO05D009813 2.7e-60 235.7 180 66.7
Sp6g11860 Schrenkiella parvula HOM05D007751 ORTHO05D009813 5.2e-59 231.5 180 66.7
A10p08560 Brassica napus HOM05D007751 ORTHO05D009813 1.5e-58 229.9 181 65.2
BraSC37t46147Z Brassica rapa HOM05D007751 ORTHO05D009813 3.3e-58 228.8 181 64.6
Carub.0008s0994 Capsella rubella HOM05D007751 ORTHO05D009813 5.3e-56 221.5 182 66.5
Carub.0007s1642 Capsella rubella HOM05D007751 ORTHO05D009813 1.6e-44 183.3 173 56.1
AL7G28560 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 1.4e-43 180.3 173 54.9
Carub.0008s1007 Capsella rubella HOM05D007751 ORTHO05D009813 1.4e-43 180.3 174 56.3
BolC9t56709H Brassica oleracea HOM05D007751 ORTHO05D009813 4.0e-43 178.7 162 58.0
AT4G24640 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 2.6e-42 176.0 173 54.3
Thhalv10026329m.g Eutrema salsugineum HOM05D007751 ORTHO05D009813 2.6e-42 176.0 173 54.9
AL8G24070 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 3.4e-42 175.6 179 54.2
Sp7g22630 Schrenkiella parvula HOM05D007751 ORTHO05D009813 4.1e-40 168.7 173 51.4
CARHR232030 Cardamine hirsuta HOM05D007751 ORTHO05D009813 5.4e-40 168.3 173 50.9
Sp6g11910 Schrenkiella parvula HOM05D007751 ORTHO05D009813 7.8e-39 164.5 174 52.9
AL8G24050 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 1.7e-38 163.3 164 53.7
Carub.0008s1001 Capsella rubella HOM05D007751 ORTHO05D009813 3.9e-38 162.2 174 50.0
A04p13370 Brassica napus HOM05D007751 ORTHO05D009813 5.0e-38 161.8 176 52.8
BcaNung04957 Brassica carinata HOM05D007751 ORTHO05D009813 1.9e-37 159.8 173 50.9
Thhalv10015309m.g Eutrema salsugineum HOM05D007751 ORTHO05D009813 1.9e-37 159.8 176 52.3
BraA04t16992Z Brassica rapa HOM05D007751 ORTHO05D009813 2.5e-37 159.5 176 51.7
C04p47120 Brassica napus HOM05D007751 ORTHO05D009813 7.3e-37 157.9 176 51.7
Sp6g11920 Schrenkiella parvula HOM05D007751 ORTHO05D009813 7.3e-37 157.9 172 48.3
BolC4t26306H Brassica oleracea HOM05D007751 ORTHO05D009813 1.2e-36 157.1 176 51.1
CARHR257930 Cardamine hirsuta HOM05D007751 ORTHO05D009813 1.6e-36 156.8 173 52.6
BraA03t10746Z Brassica rapa HOM05D007751 ORTHO05D009813 2.8e-36 156.0 174 51.1
BcaB01g04307 Brassica carinata HOM05D007751 ORTHO05D009813 6.1e-36 154.8 173 50.3
BcaC01g06316 Brassica carinata HOM05D007751 ORTHO05D009813 6.1e-36 154.8 173 50.3
A03p14510 Brassica napus HOM05D007751 ORTHO05D009813 6.1e-36 154.8 173 50.9
BolC3t14109H Brassica oleracea HOM05D007751 ORTHO05D009813 6.1e-36 154.8 173 50.3
C03p33340 Brassica napus HOM05D007751 ORTHO05D009813 8.0e-36 154.5 178 50.6
BcaC01g04833 Brassica carinata HOM05D007751 ORTHO05D009813 1.0e-35 154.1 178 50.6
THA.LOC104799810 Tarenaya hassleriana HOM05D007751 ORTHO05D009813 1.0e-35 154.1 184 50.0
C03p16960 Brassica napus HOM05D007751 ORTHO05D009813 1.4e-35 153.7 173 49.7
Sp6g11880 Schrenkiella parvula HOM05D007751 ORTHO05D009813 1.4e-35 153.7 174 50.6
C09p38520 Brassica napus HOM05D007751 ORTHO05D009813 2.3e-35 152.9 171 50.3
C01p19970 Brassica napus HOM05D007751 ORTHO05D009813 3.1e-35 152.5 173 49.7
BolC1t01925H Brassica oleracea HOM05D007751 ORTHO05D009813 4.0e-35 152.1 173 49.7
BcaC09g50845 Brassica carinata HOM05D007751 ORTHO05D009813 6.8e-35 151.4 173 49.1
A01p15990 Brassica napus HOM05D007751 ORTHO05D009813 6.8e-35 151.4 173 49.7
BraA01t01533Z Brassica rapa HOM05D007751 ORTHO05D009813 6.8e-35 151.4 173 49.7
Carub.0008s1000 Capsella rubella HOM05D007751 ORTHO05D009813 2.0e-34 149.8 175 48.6
AT5G50040 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 2.6e-34 149.4 168 51.8
AT5G50060 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 4.4e-34 148.7 164 48.8
THA.LOC104800050 Tarenaya hassleriana HOM05D007751 ORTHO05D009813 4.4e-34 148.7 181 48.1
Carub.0008s0995 Capsella rubella HOM05D007751 ORTHO05D009813 7.5e-34 147.9 178 50.6
AL8G24060 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 9.8e-34 147.5 179 50.3
Aa31sc47G80 Aethionema arabicum HOM05D007751 ORTHO05D009813 2.2e-33 146.4 151 49.7
CARHR258610 Cardamine hirsuta HOM05D007751 ORTHO05D009813 3.7e-33 145.6 174 48.9
Carub.0008s0998 Capsella rubella HOM05D007751 ORTHO05D009813 6.4e-33 144.8 176 48.9
AL8G24040 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 1.1e-32 144.1 180 50.0
AT1G54980 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 1.4e-32 143.7 167 47.9
AT5G50070 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 3.2e-32 142.5 179 49.2
Carub.0002s0822 Capsella rubella HOM05D007751 ORTHO05D009813 9.2e-32 141.0 178 45.5
Carub.0008s0999 Capsella rubella HOM05D007751 ORTHO05D009813 1.2e-31 140.6 176 47.2
Carub.0008s1002 Capsella rubella HOM05D007751 ORTHO05D009813 3.5e-31 139.0 179 49.2
Carub.0008s0997 Capsella rubella HOM05D007751 ORTHO05D009813 1.3e-30 137.1 175 46.9
Carub.0008s0996 Capsella rubella HOM05D007751 ORTHO05D009813 6.6e-30 134.8 176 46.0
BraA02t06621Z Brassica rapa HOM05D007751 ORTHO05D009813 4.7e-28 128.6 179 42.5
AL1G65530 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 8.0e-28 127.9 138 49.3
Aa31LG4G9710 Aethionema arabicum HOM05D007751 ORTHO05D009813 3.1e-27 125.9 120 55.0
CARHR284460 Cardamine hirsuta HOM05D007751 ORTHO05D009813 3.1e-27 125.9 174 42.5
C02p25780 Brassica napus HOM05D007751 ORTHO05D009813 5.2e-27 125.2 179 41.9
Aa31sc47G50 Aethionema arabicum HOM05D007751 ORTHO05D009813 4.4e-26 122.1 176 43.2
BcaC07g38163 Brassica carinata HOM05D007751 ORTHO05D009813 1.7e-25 120.2 113 56.6
AT5G50050 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 3.7e-25 119.0 177 43.5
BolC2t08647H Brassica oleracea HOM05D007751 ORTHO05D009813 1.4e-24 117.1 153 42.5
A02p15670 Brassica napus HOM05D007751 ORTHO05D009813 9.2e-24 114.4 184 39.7
BraA01t01929Z Brassica rapa HOM05D007751 ORTHO05D009813 9.2e-24 114.4 184 39.1
BraA02t06629Z Brassica rapa HOM05D007751 ORTHO05D009813 9.2e-24 114.4 184 39.7
BolC2t08679H Brassica oleracea HOM05D007751 ORTHO05D009813 1.2e-23 114.0 184 39.1
Carub.0002s0821 Capsella rubella HOM05D007751 ORTHO05D009813 1.6e-23 113.6 177 40.7
A08p21410 Brassica napus HOM05D007751 ORTHO05D009813 2.7e-23 112.8 111 56.8
C02p26100 Brassica napus HOM05D007751 ORTHO05D009813 3.5e-23 112.5 184 38.6
A01p20050 Brassica napus HOM05D007751 ORTHO05D009813 6.0e-23 111.7 184 38.0
BolC8t48582H Brassica oleracea HOM05D007751 ORTHO05D009813 2.3e-22 109.8 116 53.4
BcaC03g15060 Brassica carinata HOM05D007751 ORTHO05D009813 1.9e-21 106.7 163 38.7
CARHR258620 Cardamine hirsuta HOM05D007751 ORTHO05D009813 5.6e-21 105.1 176 41.5
Carub.0008s1006 Capsella rubella HOM05D007751 ORTHO05D009813 9.9e-18 94.4 179 40.2
Carub.0008s1005 Capsella rubella HOM05D007751 ORTHO05D009813 2.9e-17 92.8 179 40.2
Carub.0002s0820 Capsella rubella HOM05D007751 ORTHO05D009813 1.7e-14 83.6 124 37.1
A02p15600 Brassica napus HOM05D007751 ORTHO05D009813 5.6e-13 78.6 124 39.5
MD10G1032600 Malus domestica HOM05D004894 ORTHO05D005689 6.2e-12 75.1 130 32.3
Prupe.8G038100 Prunus persica HOM05D004894 ORTHO05D005689 1.4e-11 73.9 133 32.3
Carub.0008s1003 Capsella rubella HOM05D007751 ORTHO05D009813 1.8e-11 73.6 181 36.5
BcaB01g02924 Brassica carinata HOM05D007751 ORTHO05D009813 3.1e-11 72.8 60 55.0
SHI09078 Sapria himalayana HOM05D004894 ORTHO05D005689 1.7e-09 67.0 126 31.7
MD10G1032700 Malus domestica HOM05D004894 ORTHO05D005689 4.9e-09 65.5 138 28.3
Cpa.g.sc49.91 Carica papaya HOM05D007679 ORTHO05D009560 1.1e-08 64.3 153 28.1
Haze_17777 Corylus avellana HOM05D004894 ORTHO05D005689 1.9e-08 63.5 129 33.3
RcHm_v2.0_Chr6g0274541 Rosa chinensis HOM05D004894 ORTHO05D009560 5.4e-08 62.0 142 29.6
Carub.0008s1004 Capsella rubella HOM05D007751 ORTHO05D009813 7.1e-08 61.6 140 32.9
Cpa.g.sc49.90 Carica papaya HOM05D007679 ORTHO05D009560 1.2e-07 60.8 156 26.9
Cfa018299 Carpinus fangiana HOM05D004894 ORTHO05D005689 1.6e-07 60.5 144 31.2
Gohir.A13G213100 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.6e-07 60.5 138 34.8
Gohir.A13G213133 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.6e-07 60.5 138 34.8
Gohir.A13G213166 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.6e-07 60.5 138 34.8
Gohir.A13G213199 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.6e-07 60.5 138 34.8
Gohir.A13G213232 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.6e-07 60.5 138 34.8
TWI34G1211 Tripterygium wilfordii HOM05D004894 ORTHO05D005689 1.6e-07 60.5 123 31.7
Haze_17792 Corylus avellana HOM05D004894 ORTHO05D005689 2.1e-07 60.1 129 31.8
Gorai.009G256400 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.7e-07 59.7 138 34.1
Gorai.009G256000 Gossypium raimondii HOM05D007679 ORTHO05D009560 3.5e-07 59.3 138 34.8
Gorai.009G257300 Gossypium raimondii HOM05D007679 ORTHO05D009560 3.5e-07 59.3 138 34.8
Gorai.009G255800 Gossypium raimondii HOM05D007679 ORTHO05D009560 4.6e-07 58.9 138 34.8
Gorai.009G256900 Gossypium raimondii HOM05D007679 ORTHO05D009560 4.6e-07 58.9 138 34.1
Gorai.009G257000 Gossypium raimondii HOM05D007679 ORTHO05D009560 4.6e-07 58.9 138 34.1
Gorai.009G257100 Gossypium raimondii HOM05D007679 ORTHO05D009560 4.6e-07 58.9 138 34.1
Cfa018298 Carpinus fangiana HOM05D004894 ORTHO05D005689 6.0e-07 58.5 129 31.8
Gorai.009G256100 Gossypium raimondii HOM05D007679 ORTHO05D009560 6.0e-07 58.5 138 33.3
Gorai.N024500 Gossypium raimondii HOM05D007679 ORTHO05D009560 7.8e-07 58.2 138 33.3
Gorai.009G256800 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.0e-06 57.8 138 34.1
Gohir.1Z049488 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.7e-06 57.0 111 32.4
Gohir.A05G245251 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.7e-06 57.0 111 32.4
Gohir.D05G245700 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.7e-06 57.0 138 33.3
Gohir.D05G246900 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.7e-06 57.0 138 34.1
Gorai.009G257500 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.7e-06 57.0 138 33.3
Psat6g191360 Pisum sativum HOM05D004894 ORTHO05D005689 1.7e-06 57.0 120 34.2
Glyma.20G168700 Glycine max HOM05D004894 ORTHO05D005689 2.3e-06 56.6 109 35.8
CiPaw.16G009500 Carya illinoinensis HOM05D004894 ORTHO05D005689 3.0e-06 56.2 138 29.7
Gohir.A05G245318 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.0e-06 56.2 138 31.9
Gohir.D05G245800 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.0e-06 56.2 191 27.7
CSS0042410 Camellia sinensis var. sinensis HOM05D007679 ORTHO05D009560 3.9e-06 55.8 123 28.5
Glyma.10G223000 Glycine max HOM05D004894 ORTHO05D005689 3.9e-06 55.8 149 30.9
VMungo0720G1196 Vigna mungo HOM05D004894 ORTHO05D005689 3.9e-06 55.8 136 34.6
Gohir.A05G245150 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.1e-06 55.5 138 34.1
Gohir.A05G245201 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.1e-06 55.5 138 34.1
Gorai.009G256200 Gossypium raimondii HOM05D007679 ORTHO05D009560 5.1e-06 55.5 140 33.6
arahy.Tifrunner.gnm1.ann1.P5DTJP Arachis hypogaea HOM05D004894 ORTHO05D005689 6.6e-06 55.1 142 28.9
Gohir.A05G245300 Gossypium hirsutum HOM05D007679 ORTHO05D009560 6.6e-06 55.1 108 33.3
Gohir.1Z049388 Gossypium hirsutum HOM05D007679 ORTHO05D009560 8.7e-06 54.7 138 31.9


User provided reference genes

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