Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc386G20 Aethionema arabicum HOM05D000036 ORTHO05D016457 1.9e-53 212.2 104 100.0
CARHR241260 Cardamine hirsuta HOM05D000036 ORTHO05D000095 1.1e-34 149.8 97 75.3
Sp7g30960 Schrenkiella parvula HOM05D000036 ORTHO05D000095 7.4e-34 147.1 97 74.2
A01p04960 Brassica napus HOM05D000036 ORTHO05D000095 1.2e-31 139.8 95 70.5
BraA01t00478Z Brassica rapa HOM05D000036 ORTHO05D000095 1.2e-31 139.8 95 70.5
BcaC09g52133 Brassica carinata HOM05D000036 ORTHO05D016457 4.5e-31 137.9 98 67.3
BraA08t33723Z Brassica rapa HOM05D000036 ORTHO05D000095 5.8e-31 137.5 97 69.1
BcaC01g01001 Brassica carinata HOM05D000036 ORTHO05D000095 7.6e-31 137.1 97 69.1
BolC3t20972H Brassica oleracea HOM05D000036 ORTHO05D000095 7.6e-31 137.1 97 69.1
BcaB03g12810 Brassica carinata HOM05D000036 ORTHO05D000095 1.0e-30 136.7 97 69.1
Thhalv10024900m.g Eutrema salsugineum HOM05D000036 ORTHO05D000095 1.0e-30 136.7 97 70.1
C03p86780 Brassica napus HOM05D000036 ORTHO05D000095 1.7e-30 136.0 97 68.0
AT4G33220 Arabidopsis thaliana HOM05D000036 ORTHO05D000095 2.2e-30 135.6 97 72.2
A08p17730 Brassica napus HOM05D000036 ORTHO05D000095 2.9e-30 135.2 97 68.0
Carub.0007s0724 Capsella rubella HOM05D000036 ORTHO05D000095 1.1e-29 133.3 98 70.4
C01p05410 Brassica napus HOM05D000036 ORTHO05D000095 2.5e-29 132.1 96 68.8
BolC1t00521H Brassica oleracea HOM05D000036 ORTHO05D000095 2.5e-29 132.1 96 68.8
AL7G18340 Arabidopsis lyrata HOM05D000036 ORTHO05D000095 3.2e-29 131.7 97 70.1
THA.LOC104803701 Tarenaya hassleriana HOM05D000036 ORTHO05D000095 7.4e-26 120.6 88 70.5
BcaC09g52134 Brassica carinata HOM05D000036 ORTHO05D000095 1.4e-21 106.3 70 74.3
Duzib168G0496 Durio zibethinus HOM05D000036 ORTHO05D000095 5.7e-18 94.4 94 52.1
Thecc.09G068500 Theobroma cacao HOM05D000036 ORTHO05D000095 1.6e-17 92.8 93 48.4
Lalb_Chr08g0232921 Lupinus albus HOM05D000036 ORTHO05D000095 2.2e-17 92.4 98 46.9
Ciclev10007993m.g Citrus clementina HOM05D000036 ORTHO05D000095 4.8e-17 91.3 92 51.1
Peaxi162Scf00452g00008 Petunia axillaris HOM05D000036 ORTHO05D000095 6.3e-17 90.9 95 48.4
Psat1g139160 Pisum sativum HOM05D000036 ORTHO05D000095 8.2e-17 90.5 92 47.8
CANSAT40G0001 Cannabis sativa HOM05D000036 ORTHO05D000095 1.8e-16 89.4 90 52.2
Medtr2g044880 Medicago truncatula HOM05D000036 ORTHO05D000095 2.4e-16 89.0 91 45.1
Gohir.D06G081500 Gossypium hirsutum HOM05D000036 ORTHO05D000095 3.1e-16 88.6 92 43.5
Dinv25496 Davidia involucrata HOM05D000036 ORTHO05D000095 4.1e-16 88.2 93 45.2
Gorai.010G094800 Gossypium raimondii HOM05D000036 ORTHO05D000095 4.1e-16 88.2 92 43.5
Nitab4.5_0003016g0020 Nicotiana tabacum HOM05D000036 ORTHO05D000095 4.1e-16 88.2 72 54.2
Gohir.A06G084600 Gossypium hirsutum HOM05D000036 ORTHO05D000095 5.3e-16 87.8 92 43.5
Manes.16G089100 Manihot esculenta HOM05D000036 ORTHO05D000095 5.3e-16 87.8 96 45.8
Gorai.001G018300 Gossypium raimondii HOM05D000036 ORTHO05D000095 6.9e-16 87.4 97 45.4
QL11p003386 Quercus lobata HOM05D000036 ORTHO05D000095 6.9e-16 87.4 88 46.6
Sabra06G0105600 Salix brachista HOM05D000036 ORTHO05D000095 6.9e-16 87.4 80 53.8
Atru.chr7.1794 Acer truncatum HOM05D000036 ORTHO05D000095 1.5e-15 86.3 94 44.7
Cfa002930 Carpinus fangiana HOM05D000036 ORTHO05D000095 1.5e-15 86.3 95 45.3
COL.COLO4_21186 Corchorus olitorius HOM05D000036 ORTHO05D000095 1.5e-15 86.3 68 58.8
Glyma.15G184400 Glycine max HOM05D000036 ORTHO05D000095 1.5e-15 86.3 91 46.2
Haze_26079 Corylus avellana HOM05D000036 ORTHO05D000095 2.0e-15 85.9 93 45.2
SalBow5G0574 Salvia bowleyana HOM05D000036 ORTHO05D000095 2.0e-15 85.9 76 50.0
Gohir.A07G017800 Gossypium hirsutum HOM05D000036 ORTHO05D000095 2.6e-15 85.5 94 45.7
Gohir.D07G017600 Gossypium hirsutum HOM05D000036 ORTHO05D000095 2.6e-15 85.5 94 45.7
Sopen07g006400 Solanum pennellii HOM05D000036 ORTHO05D000095 2.6e-15 85.5 97 39.2
PGSC0003DMG400015933 Solanum tuberosum HOM05D000036 ORTHO05D000095 2.6e-15 85.5 93 43.0
Cpa.g.sc344.2 Carica papaya HOM05D000036 ORTHO05D000095 3.4e-15 85.1 70 58.6
Duzib150G1315 Durio zibethinus HOM05D000036 ORTHO05D000095 4.5e-15 84.7 68 58.8
MD15G1224900 Malus domestica HOM05D000036 ORTHO05D000095 7.7e-15 84.0 68 57.4
Manes.03G054300 Manihot esculenta HOM05D000036 ORTHO05D000095 1.0e-14 83.6 94 46.8
PGR044G1560 Punica granatum HOM05D000036 ORTHO05D000095 1.3e-14 83.2 71 54.9
Solyc07g017600.3 Solanum lycopersicum HOM05D000036 ORTHO05D000095 1.7e-14 82.8 97 38.1
Lj6g0016820 Lotus japonicus HOM05D000036 ORTHO05D000095 2.2e-14 82.4 71 57.7
Lalb_Chr13g0299141 Lupinus albus HOM05D000036 ORTHO05D000095 2.2e-14 82.4 95 43.2
MD02G1104600 Malus domestica HOM05D000036 ORTHO05D000095 2.2e-14 82.4 98 45.9
Ciclev10017007m.g Citrus clementina HOM05D000036 ORTHO05D016457 2.9e-14 82.0 90 50.0
Ca_13960_v3 Cicer arietinum L. HOM05D000036 ORTHO05D016457 3.8e-14 81.6 73 52.1
CAN.G1553.2 Capsicum annuum HOM05D000036 ORTHO05D000095 5.0e-14 81.3 95 43.2
VMungo1309G1894 Vigna mungo HOM05D000036 ORTHO05D000095 5.0e-14 81.3 91 45.1
Dinv42437 Davidia involucrata HOM05D000036 ORTHO05D000095 8.5e-14 80.5 68 55.9
Glyma.09G077100 Glycine max HOM05D000036 ORTHO05D000095 8.5e-14 80.5 70 51.4
Prupe.7G190300 Prunus persica HOM05D000036 ORTHO05D000095 8.5e-14 80.5 72 54.2
Cc00_g13760 Coffea canephora HOM05D000036 ORTHO05D000095 1.1e-13 80.1 72 50.0
ECA234G0766 Erigeron canadensis HOM05D000036 ORTHO05D000095 1.4e-13 79.7 68 52.9
Potri.006G134500 Populus trichocarpa HOM05D000036 ORTHO05D000095 1.4e-13 79.7 96 45.8
TPR.G27245 Trifolium pratense HOM05D000036 ORTHO05D000095 1.9e-13 79.3 91 40.7
HanXRQChr10g0319851 Helianthus annuus HOM05D000036 ORTHO05D000095 3.2e-13 78.6 69 52.2
SGA_v2.0_scaffold55G19864 Striga asiatica HOM05D000036 ORTHO05D000095 3.2e-13 78.6 94 42.6
Actinidia33516 Actinidia chinensis HOM05D000036 ORTHO05D000095 4.2e-13 78.2 99 41.4
arahy.Tifrunner.gnm1.ann1.42QIIL Arachis hypogaea HOM05D000036 ORTHO05D000095 4.2e-13 78.2 68 51.5
arahy.Tifrunner.gnm1.ann1.HLP03A Arachis hypogaea HOM05D000036 ORTHO05D000095 4.2e-13 78.2 68 51.5
MSTRG.10484 Avicennia marina HOM05D000036 ORTHO05D000095 5.5e-13 77.8 66 53.0
DCAR_011906 Daucus carota HOM05D000036 ORTHO05D000095 5.5e-13 77.8 90 38.9
Migut.L01602 Erythranthe guttata HOM05D000036 ORTHO05D000095 5.5e-13 77.8 96 45.8
Phvul.009G222100 Phaseolus vulgaris HOM05D000036 ORTHO05D000095 5.5e-13 77.8 71 50.7
Sed0025927 Sechium edule HOM05D000036 ORTHO05D000095 5.5e-13 77.8 88 42.0
arahy.Tifrunner.gnm1.ann1.IFFV7U Arachis hypogaea HOM05D000036 ORTHO05D000095 7.2e-13 77.4 70 54.3
MSTRG.19421 Avicennia marina HOM05D000036 ORTHO05D000095 7.2e-13 77.4 90 43.3
arahy.Tifrunner.gnm1.ann1.HK8QN4 Arachis hypogaea HOM05D000036 ORTHO05D000095 1.6e-12 76.3 70 54.3
CiPaw.03G199400 Carya illinoinensis HOM05D000036 ORTHO05D000095 1.6e-12 76.3 93 40.9
Psat0s1781g0040 Pisum sativum HOM05D000036 ORTHO05D000095 1.6e-12 76.3 93 43.0
ClCG10G000050 Citrullus lanatus HOM05D000036 ORTHO05D000095 2.1e-12 75.9 96 42.7
Lsat_1_v5_gn_5_138261 Lactuca sativa HOM05D000036 ORTHO05D000095 2.1e-12 75.9 67 49.3
EL10Ac8g18956 Beta vulgaris HOM05D000036 ORTHO05D000095 3.6e-12 75.1 90 38.9
Oeu004791.1 Olea europaea HOM05D000036 ORTHO05D000095 3.6e-12 75.1 73 52.1
TAR624G1370 Trochodendron aralioides HOM05D000036 ORTHO05D000095 4.6e-12 74.7 68 48.5
GSVIVG01023135001 Vitis vinifera HOM05D000036 ORTHO05D000095 4.6e-12 74.7 72 48.6
MELO3C013699.2 Cucumis melo HOM05D000036 ORTHO05D000095 6.1e-12 74.3 90 43.3
CsaV3_3G000050 Cucumis sativus L. HOM05D000036 ORTHO05D000095 6.1e-12 74.3 89 41.6
TWI63G0795 Tripterygium wilfordii HOM05D000036 ORTHO05D000095 6.1e-12 74.3 68 52.9
Sp5g17880 Schrenkiella parvula HOM05D000036 ORTHO05D000095 3.0e-11 72.0 95 38.9
TWI32G0294 Tripterygium wilfordii HOM05D000036 ORTHO05D000095 3.0e-11 72.0 73 52.1
AL5G21360 Arabidopsis lyrata HOM05D000036 ORTHO05D000095 3.9e-11 71.6 95 38.9
AT3G43270 Arabidopsis thaliana HOM05D000036 ORTHO05D000095 3.9e-11 71.6 95 36.8
Cc00_g13750 Coffea canephora HOM05D000036 ORTHO05D000095 3.9e-11 71.6 93 40.9
Lalb_Chr12g0200371 Lupinus albus HOM05D000036 ORTHO05D000095 3.9e-11 71.6 95 37.9
Ca_21347_v3 Cicer arietinum L. HOM05D000036 ORTHO05D000095 1.1e-10 70.1 91 40.7
Ca_29805_v3 Cicer arietinum L. HOM05D000036 ORTHO05D000095 1.1e-10 70.1 91 40.7
Lj7C693T29 Lonicera japonica HOM05D000036 ORTHO05D000095 1.1e-10 70.1 68 51.5
CSS0035457 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000095 1.5e-10 69.7 92 37.0
CSS0036537 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000095 1.5e-10 69.7 92 37.0
TPR.G14553 Trifolium pratense HOM05D000036 ORTHO05D000095 2.0e-10 69.3 68 48.5
Aqoxy7G00929 Aquilegia oxysepala HOM05D000036 ORTHO05D000095 2.5e-10 68.9 74 43.2
BolC3t19101H Brassica oleracea HOM05D000036 ORTHO05D000095 2.5e-10 68.9 95 38.9
BraA06t25346Z Brassica rapa HOM05D000036 ORTHO05D000095 2.5e-10 68.9 95 38.9
Sc18g0002920 Simmondsia chinensis HOM05D000036 ORTHO05D000095 2.5e-10 68.9 72 48.6
CARHR054440 Cardamine hirsuta HOM05D000036 ORTHO05D000095 4.3e-10 68.2 97 38.1
AUR62028333 Chenopodium quinoa HOM05D000036 ORTHO05D000095 4.3e-10 68.2 91 39.6
Phvul.003G126500 Phaseolus vulgaris HOM05D000036 ORTHO05D000095 4.3e-10 68.2 68 50.0
FAN19G0660 Fragaria x ananassa HOM05D000036 ORTHO05D000095 5.7e-10 67.8 102 39.2
Glyma.13G115400 Glycine max HOM05D000036 ORTHO05D000095 5.7e-10 67.8 93 39.8
Lj4g0015533 Lotus japonicus HOM05D000036 ORTHO05D000095 5.7e-10 67.8 69 46.4
Ah.09g228860 Amaranthus hybridus HOM05D000036 ORTHO05D000095 7.4e-10 67.4 64 50.0
DCAR_028537 Daucus carota HOM05D000036 ORTHO05D000095 7.4e-10 67.4 79 44.3
BcaB01g01227 Brassica carinata HOM05D000036 ORTHO05D000095 9.7e-10 67.0 95 37.9
Hund08911 Selenicereus undatus HOM05D000036 ORTHO05D000095 9.7e-10 67.0 83 41.0
VMungo1215G0029 Vigna mungo HOM05D000036 ORTHO05D000095 9.7e-10 67.0 68 48.5
A06p22620 Brassica napus HOM05D000036 ORTHO05D000095 1.3e-09 66.6 93 38.7
Glyma.17G044500 Glycine max HOM05D000036 ORTHO05D000095 1.3e-09 66.6 68 47.1
Aqoxy7G04187 Aquilegia oxysepala HOM05D000036 ORTHO05D000095 1.7e-09 66.2 80 37.5
BcaC01g02103 Brassica carinata HOM05D000036 ORTHO05D000095 2.2e-09 65.9 72 44.4
FvH4_1g09610 Fragaria vesca HOM05D000036 ORTHO05D000095 2.2e-09 65.9 102 38.2
FAN26G2413 Fragaria x ananassa HOM05D000036 ORTHO05D000095 2.2e-09 65.9 102 38.2
FAN26G2972 Fragaria x ananassa HOM05D000036 ORTHO05D000095 2.2e-09 65.9 102 38.2
arahy.Tifrunner.gnm1.ann1.18DWCY Arachis hypogaea HOM05D000036 ORTHO05D000095 2.8e-09 65.5 73 50.7
PSO421G0151 Papaver somniferum HOM05D000036 ORTHO05D000095 2.8e-09 65.5 105 36.2
Carub.0005s0914 Capsella rubella HOM05D000036 ORTHO05D000095 3.7e-09 65.1 72 41.7
FAN28G1544 Fragaria x ananassa HOM05D000036 ORTHO05D000095 3.7e-09 65.1 100 39.0
Medtr4g087970 Medicago truncatula HOM05D000036 ORTHO05D000095 3.7e-09 65.1 91 40.7
PSO724G1283 Papaver somniferum HOM05D000036 ORTHO05D000095 3.7e-09 65.1 62 50.0
PSO104G0250 Papaver somniferum HOM05D000036 ORTHO05D000095 4.8e-09 64.7 105 35.2
PSO135G0213 Papaver somniferum HOM05D000036 ORTHO05D000095 4.8e-09 64.7 62 50.0
THA.LOC104799603 Tarenaya hassleriana HOM05D000036 ORTHO05D000095 4.8e-09 64.7 70 45.7
arahy.Tifrunner.gnm1.ann1.GBY2EB Arachis hypogaea HOM05D000036 ORTHO05D000923 6.3e-09 64.3 73 50.7
RcHm_v2.0_Chr2g0096461 Rosa chinensis HOM05D000036 ORTHO05D000095 6.3e-09 64.3 69 46.4
DCAR_024787 Daucus carota HOM05D000036 ORTHO05D000095 1.1e-08 63.5 95 36.8
HPP92_010941 Vanilla planifolia HOM05D000036 ORTHO05D000095 1.1e-08 63.5 58 55.2
Thhalv10002482m.g Eutrema salsugineum HOM05D000036 ORTHO05D000095 1.4e-08 63.2 96 35.4
Ah.14g084650 Amaranthus hybridus HOM05D000036 ORTHO05D000095 2.4e-08 62.4 68 42.6
Lalb_Chr08g0232911 Lupinus albus HOM05D000036 ORTHO05D000095 2.4e-08 62.4 103 37.9
Medtr4g087980 Medicago truncatula HOM05D000036 ORTHO05D000095 2.4e-08 62.4 67 44.8
THA.LOC104815068 Tarenaya hassleriana HOM05D000036 ORTHO05D000095 3.1e-08 62.0 91 37.4
CDE06G0093 Ceratophyllum demersum HOM05D000036 ORTHO05D000095 4.1e-08 61.6 63 46.0
Psat0s1781g0120 Pisum sativum HOM05D000036 ORTHO05D000095 4.1e-08 61.6 68 44.1
arahy.Tifrunner.gnm1.ann1.1YW1H4 Arachis hypogaea HOM05D000036 ORTHO05D000095 6.9e-08 60.8 94 38.3
Psat0s1781g0160 Pisum sativum HOM05D000036 ORTHO05D000095 6.9e-08 60.8 68 47.1
SalBow6G1085 Salvia bowleyana HOM05D000036 ORTHO05D000095 1.2e-07 60.1 96 36.5
arahy.Tifrunner.gnm1.ann1.541QKW Arachis hypogaea HOM05D000036 ORTHO05D000095 2.0e-07 59.3 94 37.2
HanXRQChr12g0354221 Helianthus annuus HOM05D000036 ORTHO05D000095 2.6e-07 58.9 57 45.6
Oeu055316.1 Olea europaea HOM05D000036 ORTHO05D000095 3.4e-07 58.5 90 35.6
CDE05G1772 Ceratophyllum demersum HOM05D000036 ORTHO05D000095 4.5e-07 58.2 78 33.3
CDE07G1988 Ceratophyllum demersum HOM05D000036 ORTHO05D000095 5.9e-07 57.8 60 45.0
arahy.Tifrunner.gnm1.ann1.26ZA59 Arachis hypogaea HOM05D000036 ORTHO05D000095 1.0e-06 57.0 94 36.2
Os08g0450100 Oryza sativa ssp. japonica HOM05D000036 ORTHO05D000095 1.0e-06 57.0 65 46.2
unitig_578.g16401 Utricularia gibba HOM05D000036 ORTHO05D000095 1.0e-06 57.0 89 36.0
Glyma.09G076600 Glycine max HOM05D000036 ORTHO05D000095 1.3e-06 56.6 73 42.5
Zm00001eb177120 Zea mays HOM05D000036 ORTHO05D000095 1.3e-06 56.6 66 43.9
CDE11G0567 Ceratophyllum demersum HOM05D000036 ORTHO05D000095 2.9e-06 55.5 78 32.1
Glyma.15G184300 Glycine max HOM05D000036 ORTHO05D000095 2.9e-06 55.5 70 44.3
Psat0s1781g0080 Pisum sativum HOM05D000036 ORTHO05D000095 2.9e-06 55.5 67 43.3
Lalb_Chr11g0073901 Lupinus albus HOM05D000036 ORTHO05D016457 3.8e-06 55.1 98 35.7
ATR0099G038 Amborella trichopoda HOM05D000036 ORTHO05D000095 5.0e-06 54.7 67 38.8
Phvul.009G222300 Phaseolus vulgaris HOM05D000036 ORTHO05D000095 6.5e-06 54.3 69 42.0
Aa31LG4G12940 Aethionema arabicum HOM05D000036 ORTHO05D000095 8.5e-06 53.9 73 41.1
Migut.J00871 Erythranthe guttata HOM05D000036 ORTHO05D000095 8.5e-06 53.9 95 35.8
PGR142G3119 Punica granatum HOM05D000036 ORTHO05D000095 8.5e-06 53.9 71 39.4


User provided reference genes

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