Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 2.5e-71 271.9 131 100.0
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 2.3e-48 195.7 96 94.8
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 2.3e-48 195.7 96 94.8
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 6.6e-48 194.1 97 93.8
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 2.5e-47 192.2 96 92.7
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 1.2e-46 189.9 110 87.3
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 8.1e-46 187.2 95 91.6
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 8.1e-46 187.2 97 93.8
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 8.9e-45 183.7 95 92.6
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 8.9e-45 183.7 95 92.6
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 8.9e-45 183.7 95 92.6
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 8.9e-45 183.7 95 92.6
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 8.9e-45 183.7 97 92.8
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 2.6e-44 182.2 93 93.5
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 2.6e-44 182.2 93 93.5
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 2.6e-44 182.2 93 93.5
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 7.6e-44 180.6 85 97.6
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 2.9e-43 178.7 96 85.4
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 1.0e-40 170.2 92 81.5
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 2.3e-40 169.1 91 82.4
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 8.7e-40 167.2 97 80.4
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 8.7e-40 167.2 97 80.4
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 2.5e-39 165.6 97 79.4
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 1.3e-38 163.3 96 75.0
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 1.4e-37 159.8 97 74.2
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.8e-37 159.5 97 75.3
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 3.1e-37 158.7 88 79.5
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 4.0e-37 158.3 92 75.0
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 5.3e-37 157.9 88 79.5
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 5.3e-37 157.9 89 75.3
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 6.9e-37 157.5 95 75.8
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 6.9e-37 157.5 87 79.3
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 6.9e-37 157.5 85 81.2
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 6.9e-37 157.5 85 81.2
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 9.0e-37 157.1 87 78.2
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 1.2e-36 156.8 95 73.7
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 1.5e-36 156.4 94 75.5
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 2.0e-36 156.0 87 79.3
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 2.0e-36 156.0 97 73.2
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 2.6e-36 155.6 87 78.2
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 4.4e-36 154.8 95 72.6
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 4.4e-36 154.8 89 76.4
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 4.4e-36 154.8 84 79.8
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 5.8e-36 154.5 86 77.9
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 5.8e-36 154.5 87 78.2
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 5.8e-36 154.5 87 78.2
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 5.8e-36 154.5 87 78.2
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 5.8e-36 154.5 87 78.2
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 5.8e-36 154.5 85 80.0
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 7.6e-36 154.1 89 75.3
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 7.6e-36 154.1 87 77.0
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 7.6e-36 154.1 88 73.9
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 9.9e-36 153.7 93 71.0
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 9.9e-36 153.7 85 77.6
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 9.9e-36 153.7 87 75.9
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 9.9e-36 153.7 95 73.7
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.3e-35 153.3 84 78.6
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.3e-35 153.3 84 78.6
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 1.7e-35 152.9 85 77.6
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 1.7e-35 152.9 87 75.9
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 1.7e-35 152.9 84 77.4
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 2.2e-35 152.5 94 71.3
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 2.2e-35 152.5 89 75.3
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 2.2e-35 152.5 83 79.5
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 2.9e-35 152.1 94 77.7
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 2.9e-35 152.1 89 75.3
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 2.9e-35 152.1 92 73.9
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 3.8e-35 151.8 85 78.8
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 3.8e-35 151.8 94 73.4
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 4.9e-35 151.4 86 76.7
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 4.9e-35 151.4 85 76.5
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 4.9e-35 151.4 88 72.7
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 1.1e-34 150.2 85 77.6
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 1.1e-34 150.2 84 77.4
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 1.4e-34 149.8 86 73.3
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 1.9e-34 149.4 85 75.3
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 1.9e-34 149.4 90 74.4
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 1.9e-34 149.4 94 69.1
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 1.9e-34 149.4 88 77.3
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 1.9e-34 149.4 87 74.7
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 2.4e-34 149.1 84 75.0
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 4.2e-34 148.3 93 72.0
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 7.1e-34 147.5 84 76.2
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 1.6e-33 146.4 83 73.5
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 1.6e-33 146.4 83 79.5
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 1.6e-33 146.4 83 79.5
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 1.6e-33 146.4 84 77.4
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 2.1e-33 146.0 84 75.0
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 2.1e-33 146.0 84 75.0
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 2.1e-33 146.0 84 75.0
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 3.5e-33 145.2 93 73.1
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 4.6e-33 144.8 88 76.1
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 4.6e-33 144.8 96 70.8
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 4.6e-33 144.8 97 70.1
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 4.6e-33 144.8 97 72.2
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 6.0e-33 144.4 81 75.3
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 6.0e-33 144.4 84 73.8
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 6.0e-33 144.4 79 78.5
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 6.0e-33 144.4 91 71.4
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 7.9e-33 144.1 87 70.1
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 1.3e-32 143.3 85 76.5
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 1.3e-32 143.3 86 70.9
Nitab4.5_0000060g0090 Nicotiana tabacum HOM05D005988 ORTHO05D007392 2.3e-32 142.5 81 79.0
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 5.1e-32 141.4 95 68.4
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 6.6e-32 141.0 118 57.6
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 1.1e-31 140.2 94 64.9
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 1.5e-31 139.8 94 69.1
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 5.6e-31 137.9 95 67.4
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 7.4e-31 137.5 84 70.2
MD13G1118900 Malus domestica HOM05D005988 ORTHO05D007392 9.6e-31 137.1 79 74.7
DCAR_024095 Daucus carota HOM05D005988 ORTHO05D007392 1.3e-30 136.7 84 70.2
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 1.3e-30 136.7 93 68.8
SGA_v2.0_scaffold144G35838 Striga asiatica HOM05D005988 ORTHO05D007392 4.5e-28 128.3 86 67.4
Lalb_Chr23g0278041 Lupinus albus HOM05D005988 ORTHO05D007392 2.4e-26 122.5 84 65.5
Lalb_Chr23g0278031 Lupinus albus HOM05D005988 ORTHO05D007392 1.2e-25 120.2 84 63.1
Lsat_1_v5_gn_7_95720 Lactuca sativa HOM05D005988 ORTHO05D007392 1.0e-24 117.1 72 68.1
Migut.G00897 Erythranthe guttata HOM05D005988 ORTHO05D007392 1.1e-23 113.6 70 71.4
Migut.O00848 Erythranthe guttata HOM05D005988 ORTHO05D007392 1.1e-23 113.6 70 71.4
CBR_g8533 Chara braunii HOM05D005988 ORTHO05D007392 1.7e-19 99.8 80 51.2
Nitab4.5_0001404g0080 Nicotiana tabacum HOM05D005988 ORTHO05D007392 3.8e-19 98.6 63 71.4
Pp3c3_5450 Physcomitrium patens HOM05D005988 ORTHO05D007392 3.2e-18 95.5 82 47.6
Mapoly0011s0010 Marchantia polymorpha HOM05D005988 ORTHO05D007392 1.8e-16 89.7 78 50.0
BcaB05g24274 Brassica carinata HOM05D005988 ORTHO05D007392 1.5e-15 86.7 88 60.2
AagrBONN_evm.TU.Sc2ySwM_117.535 Anthoceros agrestis HOM05D005988 ORTHO05D007392 8.2e-14 80.9 85 42.4
SMO356G0160 Selaginella moellendorffii HOM05D005988 ORTHO05D007392 3.4e-12 75.5 85 40.0
TAR629G1917 Trochodendron aralioides HOM05D000133 ORTHO05D002928 3.8e-11 72.0 42 66.7
Actinidia30649 Actinidia chinensis HOM05D005988 ORTHO05D007392 6.1e-09 64.7 41 78.0
Aa31LG3G5740 Aethionema arabicum HOM05D000002 ORTHO05D002065 1.1e-07 60.5 51 64.7
Zm00001eb053260 Zea mays HOM05D005988 ORTHO05D007392 1.9e-07 59.7 36 72.2
Zm00001eb053240 Zea mays HOM05D005988 ORTHO05D007392 3.3e-07 58.9 36 69.4
arahy.Tifrunner.gnm1.ann1.BFR0IC Arachis hypogaea HOM05D005988 ORTHO05D007392 2.8e-06 55.8 56 44.6


User provided reference genes

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