Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc352G20 Aethionema arabicum HOM05D003863 ORTHO05D004372 6.7e-64 247.3 133 100.0
Aa31LG5G24190 Aethionema arabicum HOM05D003863 ORTHO05D004372 4.7e-49 198.0 182 67.0
Carub.0130s0002 Capsella rubella HOM05D003863 ORTHO05D004372 1.4e-40 169.9 182 57.1
Thhalv10014343m.g Eutrema salsugineum HOM05D003863 ORTHO05D004372 1.4e-40 169.9 181 57.5
Carub.0006s0583 Capsella rubella HOM05D003863 ORTHO05D004372 1.8e-40 169.5 184 58.2
Thhalv10021344m.g Eutrema salsugineum HOM05D003863 ORTHO05D004372 2.2e-38 162.5 182 55.5
CARHR206240 Cardamine hirsuta HOM05D003863 ORTHO05D004372 4.8e-38 161.4 182 54.4
AL6G17060 Arabidopsis lyrata HOM05D003863 ORTHO05D004372 1.8e-37 159.5 184 55.4
Sp3g10410 Schrenkiella parvula HOM05D003863 ORTHO05D004372 1.8e-37 159.5 182 54.4
AL3G23850 Arabidopsis lyrata HOM05D003863 ORTHO05D004372 1.2e-36 156.8 182 53.8
CARHR086750 Cardamine hirsuta HOM05D003863 ORTHO05D004372 5.9e-36 154.5 182 52.7
AT3G12170 Arabidopsis thaliana HOM05D003863 ORTHO05D004372 1.3e-35 153.3 182 52.7
Carub.0003s1154 Capsella rubella HOM05D003863 ORTHO05D004372 6.5e-35 151.0 182 51.6
AT5G06910 Arabidopsis thaliana HOM05D003863 ORTHO05D004372 1.1e-34 150.2 186 51.6
BolC1t05258H Brassica oleracea HOM05D003863 ORTHO05D004372 5.5e-34 147.9 183 53.6
BcaC05g29275 Brassica carinata HOM05D003863 ORTHO05D004372 1.2e-33 146.7 173 52.0
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 1.2e-33 146.7 173 52.0
BolC5t34225H Brassica oleracea HOM05D003863 ORTHO05D004372 1.2e-33 146.7 173 52.0
Thecc.05G164500 Theobroma cacao HOM05D003863 ORTHO05D004372 1.2e-33 146.7 182 51.1
BcaC09g48222 Brassica carinata HOM05D003863 ORTHO05D004372 1.6e-33 146.4 181 51.9
C01p53120 Brassica napus HOM05D003863 ORTHO05D004372 1.6e-33 146.4 181 51.9
COL.COLO4_30158 Corchorus olitorius HOM05D003863 ORTHO05D004372 1.6e-33 146.4 182 48.9
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 4.7e-33 144.8 173 51.4
Medtr1g052110 Medicago truncatula HOM05D003863 ORTHO05D004372 6.1e-33 144.4 182 50.5
Phvul.007G256000 Phaseolus vulgaris HOM05D003863 ORTHO05D004372 6.1e-33 144.4 183 50.3
Manes.09G030000 Manihot esculenta HOM05D003863 ORTHO05D004372 1.0e-32 143.7 181 48.6
THA.LOC104819593 Tarenaya hassleriana HOM05D003863 ORTHO05D004372 1.0e-32 143.7 185 51.9
Glyma.02G179900 Glycine max HOM05D003863 ORTHO05D004372 1.4e-32 143.3 183 51.9
Gohir.A01G135100 Gossypium hirsutum HOM05D003863 ORTHO05D004372 1.4e-32 143.3 181 48.1
TPR.G22785 Trifolium pratense HOM05D003863 ORTHO05D004372 1.4e-32 143.3 181 50.8
BcaB04g21091 Brassica carinata HOM05D003863 ORTHO05D004372 1.8e-32 142.9 181 51.9
Duzib093G1809 Durio zibethinus HOM05D003863 ORTHO05D004372 2.3e-32 142.5 182 49.5
Duzib128G1292 Durio zibethinus HOM05D003863 ORTHO05D004372 2.3e-32 142.5 183 48.6
Lalb_Chr25g0287491 Lupinus albus HOM05D003863 ORTHO05D004372 2.3e-32 142.5 181 49.2
Haze_19919 Corylus avellana HOM05D003863 ORTHO05D004372 3.0e-32 142.1 184 48.9
CsaV3_3G039120 Cucumis sativus L. HOM05D003863 ORTHO05D004372 3.0e-32 142.1 182 48.4
VMungo0720G1655 Vigna mungo HOM05D003863 ORTHO05D004372 3.0e-32 142.1 183 49.2
arahy.Tifrunner.gnm1.ann1.C9C50Y Arachis hypogaea HOM05D003863 ORTHO05D004372 4.0e-32 141.7 182 50.0
Cfa016873 Carpinus fangiana HOM05D003863 ORTHO05D004372 4.0e-32 141.7 184 48.9
Psat6g089000 Pisum sativum HOM05D003863 ORTHO05D004372 4.0e-32 141.7 182 50.5
QL07p021922 Quercus lobata HOM05D003863 ORTHO05D004372 5.2e-32 141.4 181 48.6
Gorai.002G153200 Gossypium raimondii HOM05D003863 ORTHO05D004372 6.8e-32 141.0 181 47.5
Aa31sc947G20 Aethionema arabicum HOM05D003863 ORTHO05D004372 1.2e-31 140.2 122 66.4
arahy.Tifrunner.gnm1.ann1.8Q4A0R Arachis hypogaea HOM05D003863 ORTHO05D004372 1.5e-31 139.8 182 49.5
Gohir.D01G122300 Gossypium hirsutum HOM05D003863 ORTHO05D004372 1.5e-31 139.8 181 47.0
Sed0012159 Sechium edule HOM05D003863 ORTHO05D004372 1.5e-31 139.8 182 48.4
Nitab4.5_0011629g0010 Nicotiana tabacum HOM05D003863 ORTHO05D004372 3.4e-31 138.7 179 49.2
THA.LOC104807339 Tarenaya hassleriana HOM05D003863 ORTHO05D004372 3.4e-31 138.7 183 49.7
Ca_25740_v3 Cicer arietinum L. HOM05D003863 ORTHO05D004372 4.4e-31 138.3 177 49.2
COL.COLO4_28711 Corchorus olitorius HOM05D003863 ORTHO05D004372 4.4e-31 138.3 202 44.6
Glyma.10G094400 Glycine max HOM05D003863 ORTHO05D004372 4.4e-31 138.3 183 51.4
RcHm_v2.0_Chr3g0480921 Rosa chinensis HOM05D003863 ORTHO05D004372 4.4e-31 138.3 183 48.1
FvH4_5g27800 Fragaria vesca HOM05D003863 ORTHO05D004372 5.7e-31 137.9 183 48.1
Gorai.002G229300 Gossypium raimondii HOM05D003863 ORTHO05D004372 5.7e-31 137.9 182 47.8
Lj5g0011357 Lotus japonicus HOM05D003863 ORTHO05D004372 7.5e-31 137.5 179 50.8
Atru.chr1.998 Acer truncatum HOM05D003863 ORTHO05D004372 9.7e-31 137.1 183 47.5
Gohir.A01G195500 Gossypium hirsutum HOM05D003863 ORTHO05D004372 9.7e-31 137.1 182 47.3
MD14G1065200 Malus domestica HOM05D003863 ORTHO05D004372 1.3e-30 136.7 182 49.5
Atru.chr1.970 Acer truncatum HOM05D003863 ORTHO05D004372 2.2e-30 136.0 183 47.0
Cpa.g.sc92.2 Carica papaya HOM05D003863 ORTHO05D004372 2.2e-30 136.0 182 49.5
FAN08G1264 Fragaria x ananassa HOM05D003863 ORTHO05D004372 3.7e-30 135.2 183 47.5
Medtr7g092380 Medicago truncatula HOM05D003863 ORTHO05D004372 3.7e-30 135.2 180 48.3
ECA247G0427 Erigeron canadensis HOM05D003863 ORTHO05D004372 4.8e-30 134.8 182 47.3
Migut.J01791 Erythranthe guttata HOM05D003863 ORTHO05D004372 4.8e-30 134.8 177 48.0
FAN04G3058 Fragaria x ananassa HOM05D003863 ORTHO05D004372 4.8e-30 134.8 181 48.1
DCAR_017002 Daucus carota HOM05D003863 ORTHO05D004372 8.3e-30 134.0 180 46.7
Lalb_Chr20g0110941 Lupinus albus HOM05D003863 ORTHO05D004372 8.3e-30 134.0 184 49.5
MD12G1065200 Malus domestica HOM05D003863 ORTHO05D004372 1.4e-29 133.3 180 48.3
Ciclev10005578m.g Citrus clementina HOM05D003863 ORTHO05D004372 2.4e-29 132.5 183 47.5
Hma1.2p1_1995F.1_g310320 Hydrangea macrophylla HOM05D003863 ORTHO05D004372 2.4e-29 132.5 180 47.2
Nitab4.5_0000608g0040 Nicotiana tabacum HOM05D003863 ORTHO05D004372 2.4e-29 132.5 177 47.5
Hma1.2p1_0621F.1_g190590 Hydrangea macrophylla HOM05D003863 ORTHO05D004372 3.1e-29 132.1 182 46.2
Lj1g0028028 Lotus japonicus HOM05D003863 ORTHO05D004372 4.1e-29 131.7 180 46.7
arahy.Tifrunner.gnm1.ann1.C9GWT5 Arachis hypogaea HOM05D003863 ORTHO05D004372 5.3e-29 131.3 180 47.2
arahy.Tifrunner.gnm1.ann1.S1RWR6 Arachis hypogaea HOM05D003863 ORTHO05D004372 5.3e-29 131.3 180 47.2
Nitab4.5_0000452g0120 Nicotiana tabacum HOM05D003863 ORTHO05D004372 5.3e-29 131.3 179 47.5
Nitab4.5_0000991g0120 Nicotiana tabacum HOM05D003863 ORTHO05D004372 5.3e-29 131.3 177 47.5
HanXRQChr05g0132211 Helianthus annuus HOM05D003863 ORTHO05D004372 7.0e-29 131.0 180 46.1
Lsat_1_v5_gn_8_80000 Lactuca sativa HOM05D003863 ORTHO05D004372 7.0e-29 131.0 180 45.0
Rhsim04G0099400 Rhododendron simsii HOM05D003863 ORTHO05D004372 7.0e-29 131.0 183 45.4
CAN.G1161.3 Capsicum annuum HOM05D003863 ORTHO05D004372 9.1e-29 130.6 177 46.9
ECA236G3425 Erigeron canadensis HOM05D003863 ORTHO05D004372 9.1e-29 130.6 180 44.4
TPR.G3845 Trifolium pratense HOM05D003863 ORTHO05D004372 1.2e-28 130.2 180 46.1
Sed0023590 Sechium edule HOM05D003863 ORTHO05D004372 1.6e-28 129.8 183 45.9
SGA_v2.0_scaffold105G30458 Striga asiatica HOM05D003863 ORTHO05D004372 2.0e-28 129.4 177 46.9
GSVIVG01033339001 Vitis vinifera HOM05D003863 ORTHO05D004372 2.7e-28 129.0 183 44.8
Cc06_g16500 Coffea canephora HOM05D003863 ORTHO05D004372 4.5e-28 128.3 180 45.6
Peaxi162Scf00003g04127 Petunia axillaris HOM05D003863 ORTHO05D004372 4.5e-28 128.3 177 47.5
Sc13g0002010 Simmondsia chinensis HOM05D003863 ORTHO05D004372 4.5e-28 128.3 182 43.4
CiPaw.10G030300 Carya illinoinensis HOM05D003863 ORTHO05D004372 5.9e-28 127.9 184 45.7
Glyma.19G143100 Glycine max HOM05D003863 ORTHO05D004372 7.7e-28 127.5 180 44.4
Potri.016G051800 Populus trichocarpa HOM05D003863 ORTHO05D004372 7.7e-28 127.5 184 47.3
Sopen10g029730 Solanum pennellii HOM05D003863 ORTHO05D004372 7.7e-28 127.5 177 44.6
Solyc10g079090.3 Solanum lycopersicum HOM05D003863 ORTHO05D004372 1.3e-27 126.7 177 44.6
TWI74G1121 Tripterygium wilfordii HOM05D003863 ORTHO05D004372 1.3e-27 126.7 183 46.4
Psat3g071000 Pisum sativum HOM05D003863 ORTHO05D004372 2.2e-27 125.9 185 47.0
VMungo1383G0990 Vigna mungo HOM05D003863 ORTHO05D004372 2.2e-27 125.9 179 43.6
Nn7g36178 Nelumbo nucifera HOM05D003863 ORTHO05D004372 2.9e-27 125.6 183 44.8
Actinidia09364 Actinidia chinensis HOM05D003863 ORTHO05D004372 6.5e-27 124.4 182 44.0
Potri.006G056400 Populus trichocarpa HOM05D003863 ORTHO05D004372 6.5e-27 124.4 184 47.3
SGA_v2.0_scaffold69G23092 Striga asiatica HOM05D003863 ORTHO05D004372 6.5e-27 124.4 177 45.8
TWI77G0762 Tripterygium wilfordii HOM05D003863 ORTHO05D004372 8.5e-27 124.0 183 44.8
unitig_736.g22293 Utricularia gibba HOM05D003863 ORTHO05D004372 1.1e-26 123.6 178 43.8
Hund19171 Selenicereus undatus HOM05D003863 ORTHO05D004372 1.9e-26 122.9 181 41.4
vmacro07872 Vaccinium macrocarpon HOM05D003863 ORTHO05D004372 1.9e-26 122.9 182 44.5
AUR62024384 Chenopodium quinoa HOM05D003863 ORTHO05D004372 2.5e-26 122.5 182 43.4
Lsat_1_v5_gn_9_27640 Lactuca sativa HOM05D003863 ORTHO05D004372 3.2e-26 122.1 181 44.8
PGSC0003DMG400008182 Solanum tuberosum HOM05D003863 ORTHO05D004372 3.2e-26 122.1 177 44.6
Lj7A597G67 Lonicera japonica HOM05D003863 ORTHO05D004372 4.2e-26 121.7 184 46.2
CSS0033131 Camellia sinensis var. sinensis HOM05D003863 ORTHO05D004372 9.4e-26 120.6 181 43.1
Eucgr.A02407 Eucalyptus grandis HOM05D003863 ORTHO05D004372 1.2e-25 120.2 181 43.6
Sabra06G0039800 Salix brachista HOM05D000738 ORTHO05D004372 1.6e-25 119.8 183 45.9
vmacro09095 Vaccinium macrocarpon HOM05D003863 ORTHO05D004372 1.6e-25 119.8 211 41.2
DCAR_013574 Daucus carota HOM05D000738 ORTHO05D000675 3.6e-25 118.6 182 46.2
Sabra16G0055500 Salix brachista HOM05D000738 ORTHO05D004372 3.6e-25 118.6 173 43.9
Oeu033773.1 Olea europaea HOM05D003863 ORTHO05D004372 6.1e-25 117.9 179 41.9
ClCG10G017290 Citrullus lanatus HOM05D003863 ORTHO05D004372 1.4e-24 116.7 259 35.5
PGR004G2357 Punica granatum HOM05D003863 ORTHO05D004372 2.3e-24 115.9 184 42.4
MBI04_g13619_MAGBIO Magnolia biondii HOM05D003863 ORTHO05D004372 5.2e-24 114.8 183 41.5
TAR369G0992 Trochodendron aralioides HOM05D003863 ORTHO05D004372 2.0e-23 112.8 182 39.6
Eucgr.D01662 Eucalyptus grandis HOM05D003863 ORTHO05D004372 2.6e-23 112.5 171 42.7
Rhsim03G0011600 Rhododendron simsii HOM05D003863 ORTHO05D004372 3.4e-23 112.1 183 42.1
Aqoxy1G03653 Aquilegia oxysepala HOM05D003863 ORTHO05D004372 5.7e-23 111.3 183 39.9
Nn2g15421 Nelumbo nucifera HOM05D003863 ORTHO05D004372 3.7e-22 108.6 183 41.5
Prupe.7G068800 Prunus persica HOM05D003863 ORTHO05D004372 3.7e-22 108.6 162 47.5
Dinv24118 Davidia involucrata HOM05D000738 ORTHO05D000675 4.8e-22 108.2 149 43.0
Eucgr.H04357 Eucalyptus grandis HOM05D003863 ORTHO05D004372 4.8e-22 108.2 182 40.1
TAR623G1565 Trochodendron aralioides HOM05D003863 ORTHO05D004372 8.3e-22 107.5 184 39.1
AUR62025971 Chenopodium quinoa HOM05D003863 ORTHO05D004372 2.4e-21 105.9 159 41.5
CDE05G1286 Ceratophyllum demersum HOM05D003863 ORTHO05D004372 4.1e-21 105.1 184 41.3
Eucgr.D00166 Eucalyptus grandis HOM05D003863 ORTHO05D004372 7.0e-21 104.4 182 39.0
TAR623G1571 Trochodendron aralioides HOM05D003863 ORTHO05D004372 4.5e-20 101.7 182 37.9
CSS0001798 Camellia sinensis var. sinensis HOM05D003863 ORTHO05D004372 7.7e-20 100.9 184 37.0
Os02g0195800 Oryza sativa ssp. japonica HOM05D003863 ORTHO05D004372 1.0e-19 100.5 180 38.9
HPP92_027547 Vanilla planifolia HOM05D003863 ORTHO05D004372 1.3e-19 100.1 179 36.9
Aa31sc1365G20 Aethionema arabicum HOM05D003863 ORTHO05D004372 3.8e-19 98.6 133 50.4
Lj4C258T4 Lonicera japonica HOM05D003863 ORTHO05D004372 1.5e-18 96.7 153 45.1
Actinidia17250 Actinidia chinensis HOM05D003863 ORTHO05D004372 3.3e-18 95.5 136 40.4
Zm00001eb236340 Zea mays HOM05D003863 ORTHO05D004372 5.5e-18 94.7 178 37.1
Dinv36281 Davidia involucrata HOM05D003863 ORTHO05D004372 9.5e-18 94.0 173 39.9
MSTRG.26104 Avicennia marina HOM05D003863 ORTHO05D004372 1.2e-17 93.6 133 42.1
Hma1.2p1_0247F.1_g101930 Hydrangea macrophylla HOM05D003863 ORTHO05D004372 1.2e-17 93.6 107 48.6
Phvul.001G137200 Phaseolus vulgaris HOM05D003863 ORTHO05D004372 1.6e-17 93.2 122 41.8
HPP92_003009 Vanilla planifolia HOM05D003863 ORTHO05D004372 2.1e-17 92.8 186 34.4
HanXRQChr15g0491301 Helianthus annuus HOM05D003863 ORTHO05D004372 2.8e-17 92.4 185 36.8
unitig_899.g15083 Utricularia gibba HOM05D003863 ORTHO05D004372 2.8e-17 92.4 157 38.9
SEGI_03407 Sequoiadendron giganteum HOM05D003863 ORTHO05D004372 3.6e-17 92.0 183 37.2
PSO384G3404 Papaver somniferum HOM05D003863 ORTHO05D004372 1.0e-16 90.5 187 34.8
Gohir.D01G185900 Gossypium hirsutum HOM05D003863 ORTHO05D004372 1.8e-16 89.7 122 43.4
MELO3C000540.2 Cucumis melo HOM05D003863 ORTHO05D004372 3.0e-16 89.0 99 52.5
PSO339G0957 Papaver somniferum HOM05D003863 ORTHO05D004372 6.8e-16 87.8 187 33.7
EL10Ac3g06991 Beta vulgaris HOM05D003863 ORTHO05D004372 8.9e-16 87.4 183 36.6
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 2.2e-14 82.8 130 38.5
Zm00001eb139200 Zea mays HOM05D003863 ORTHO05D004372 3.7e-14 82.0 130 38.5
Zm00001eb205970 Zea mays HOM05D003863 ORTHO05D004372 4.9e-14 81.6 130 38.5
Ca_10136_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009773 5.4e-13 78.2 54 70.4
Ca_30624_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009773 5.4e-13 78.2 54 70.4
MELO3C009655.2 Cucumis melo HOM05D003863 ORTHO05D004372 9.2e-13 77.4 54 68.5
Dinv18093 Davidia involucrata HOM05D003863 ORTHO05D004372 1.7e-11 73.2 114 44.7
SMO140G0044 Selaginella moellendorffii HOM05D003863 ORTHO05D004372 1.7e-11 73.2 176 32.4
arahy.Tifrunner.gnm1.ann1.GXA4WU Arachis hypogaea HOM05D003863 ORTHO05D004372 8.6e-11 70.9 48 70.8
arahy.Tifrunner.gnm1.ann1.83FBL0 Arachis hypogaea HOM05D003863 ORTHO05D004372 4.3e-10 68.6 81 51.9
arahy.Tifrunner.gnm1.ann1.PHL73A Arachis hypogaea HOM05D003863 ORTHO05D004372 4.3e-10 68.6 81 51.9
HanXRQChr14g0439201 Helianthus annuus HOM05D003863 ORTHO05D004372 4.3e-10 68.6 88 48.9
AagrBONN_evm.TU.Sc2ySwM_117.632 Anthoceros agrestis HOM05D003863 ORTHO05D004372 1.6e-09 66.6 168 32.1
Zm00001eb185180 Zea mays HOM05D003863 ORTHO05D004372 3.6e-09 65.5 56 57.1
ATR0432G001 Amborella trichopoda HOM05D003863 ORTHO05D004372 4.7e-09 65.1 54 59.3
Nn5g29748 Nelumbo nucifera HOM05D003863 ORTHO05D004372 4.7e-09 65.1 100 43.0
MSTRG.10828 Avicennia marina HOM05D003863 ORTHO05D004372 1.4e-08 63.5 92 46.7
ATR0436G001 Amborella trichopoda HOM05D003863 ORTHO05D004372 3.1e-08 62.4 54 57.4
Mapoly0005s0205 Marchantia polymorpha HOM05D003863 ORTHO05D004372 3.1e-08 62.4 188 28.7
Pp3c11_26050 Physcomitrium patens HOM05D003863 ORTHO05D004372 6.8e-08 61.2 179 29.1
Nn4g24599 Nelumbo nucifera HOM05D003863 ORTHO05D004372 2.6e-07 59.3 97 37.1
Zm00001eb028880 Zea mays HOM05D003863 ORTHO05D004372 2.6e-07 59.3 50 58.0
Actinidia38567 Actinidia chinensis HOM05D004736 ORTHO05D006424 3.4e-07 58.9 87 43.7
ATR0912G002 Amborella trichopoda HOM05D003863 ORTHO05D004372 3.4e-07 58.9 100 40.0
arahy.Tifrunner.gnm1.ann1.8E43EG Arachis hypogaea HOM05D003863 ORTHO05D004372 5.8e-07 58.2 37 70.3
arahy.Tifrunner.gnm1.ann1.F7NR6L Arachis hypogaea HOM05D000530 ORTHO05D000621 1.3e-06 57.0 78 44.9


User provided reference genes

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