Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 5.2e-145 517.7 263 100.0
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 3.3e-123 445.3 264 88.3
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.4e-121 439.9 264 87.9
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 1.5e-120 436.4 264 87.1
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 6.5e-119 431.0 264 86.0
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 1.1e-118 430.3 264 86.4
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 1.9e-118 429.5 264 86.4
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 7.1e-118 427.6 264 85.6
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 6.0e-117 424.5 265 85.7
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.0e-116 423.7 280 81.8
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 5.1e-116 421.4 265 84.9
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.3e-115 418.7 264 84.1
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.1e-114 416.0 264 83.3
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.8e-114 415.6 264 84.1
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.1e-113 413.7 264 84.5
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.3e-111 406.8 265 83.0
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.3e-111 406.8 264 80.7
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 2.3e-108 396.0 263 81.0
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 2.8e-106 389.0 264 78.0
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.5e-104 381.7 252 79.8
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.0e-103 380.6 264 77.3
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.3e-103 380.2 265 75.5
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 6.5e-103 377.9 262 75.6
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 6.5e-103 377.9 267 74.9
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 8.5e-103 377.5 266 74.8
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 1.4e-102 376.7 264 75.0
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.9e-102 376.3 264 75.4
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 4.2e-102 375.2 266 75.2
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 9.4e-102 374.0 266 74.4
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 9.4e-102 374.0 258 75.6
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 3.6e-101 372.1 264 74.6
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 6.1e-101 371.3 266 74.1
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 7.9e-101 370.9 264 73.5
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 7.9e-101 370.9 259 76.1
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.8e-100 369.8 266 73.3
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.3e-100 369.4 266 73.3
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 3.9e-100 368.6 264 72.7
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 5.1e-100 368.2 265 73.2
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 5.1e-100 368.2 265 75.1
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 8.8e-100 367.5 267 76.8
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 8.8e-100 367.5 265 74.7
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 8.8e-100 367.5 264 75.0
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 8.8e-100 367.5 265 73.6
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.1e-99 367.1 265 74.3
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.3e-99 365.5 266 72.9
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 3.3e-99 365.5 266 72.9
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 4.4e-99 365.2 265 72.5
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 9.7e-99 364.0 264 72.3
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.3e-98 363.6 266 72.6
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.3e-98 363.6 265 72.1
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.7e-98 363.2 265 73.6
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.7e-98 363.2 266 73.3
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 2.8e-98 362.5 264 74.2
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 2.8e-98 362.5 260 73.8
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.7e-98 362.1 265 72.5
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.7e-98 362.1 265 72.1
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 4.8e-98 361.7 265 73.2
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 6.3e-98 361.3 266 71.1
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 6.3e-98 361.3 264 71.6
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.1e-97 360.5 265 74.7
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.4e-97 360.1 264 72.0
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 1.8e-97 359.8 262 73.7
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 1.8e-97 359.8 266 72.9
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 1.8e-97 359.8 272 73.2
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.4e-97 359.4 264 73.1
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.4e-97 359.4 264 73.1
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.4e-97 359.4 264 72.3
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.1e-97 359.0 251 74.9
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 4.1e-97 358.6 264 70.8
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 9.1e-97 357.5 265 71.3
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 9.1e-97 357.5 254 75.6
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 2.0e-96 356.3 264 72.7
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.0e-96 356.3 264 72.0
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 2.0e-96 356.3 265 71.7
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 3.4e-96 355.5 265 72.1
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 3.4e-96 355.5 265 72.5
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 3.4e-96 355.5 265 70.9
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 4.5e-96 355.1 265 72.1
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 5.9e-96 354.8 266 72.9
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 5.9e-96 354.8 265 70.9
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.3e-95 353.6 264 71.6
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 2.2e-95 352.8 287 66.9
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 2.2e-95 352.8 264 72.0
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 2.2e-95 352.8 266 72.2
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 2.2e-95 352.8 265 71.7
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.9e-95 352.4 267 69.7
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 3.8e-95 352.1 255 72.5
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.8e-95 352.1 264 72.7
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 5.0e-95 351.7 261 70.1
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 6.5e-95 351.3 265 71.7
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 6.5e-95 351.3 266 71.4
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.1e-94 350.5 252 73.4
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.1e-94 350.5 264 70.5
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-94 350.5 266 70.7
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.4e-94 350.1 266 71.1
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 1.9e-94 349.7 261 70.1
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.5e-94 349.4 266 70.3
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 3.2e-94 349.0 241 78.8
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 3.2e-94 349.0 266 69.9
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.2e-94 348.6 266 69.9
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 4.2e-94 348.6 265 70.6
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 5.5e-94 348.2 264 72.3
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 5.5e-94 348.2 259 69.1
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 9.4e-94 347.4 264 70.5
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 9.4e-94 347.4 261 69.0
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 1.2e-93 347.1 268 71.3
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.6e-93 346.7 266 69.9
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 4.7e-93 345.1 265 70.6
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 7.9e-93 344.4 265 71.3
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 1.0e-92 344.0 263 69.6
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.0e-92 344.0 253 72.3
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 2.3e-92 342.8 261 70.5
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 2.3e-92 342.8 272 69.9
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 3.9e-92 342.0 259 68.0
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.9e-92 342.0 255 71.4
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 5.2e-92 341.7 264 70.8
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 8.8e-92 340.9 257 70.8
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 2.0e-91 339.7 261 70.1
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 3.3e-91 339.0 260 70.8
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 3.3e-91 339.0 304 63.2
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 4.4e-91 338.6 256 69.9
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 7.4e-91 337.8 266 68.8
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 9.7e-91 337.4 288 66.3
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 1.3e-90 337.0 262 69.1
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 6.3e-90 334.7 248 70.6
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 4.1e-89 332.0 279 65.9
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 4.1e-89 332.0 263 69.2
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 7.7e-88 327.8 262 68.3
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 7.7e-88 327.8 261 67.4
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 7.7e-88 327.8 261 67.4
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.9e-87 325.9 266 66.9
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 6.5e-87 324.7 259 68.0
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 2.7e-85 319.3 259 66.4
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 8.0e-85 317.8 267 65.5
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 1.4e-84 317.0 253 67.6
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 2.3e-84 316.2 314 58.3
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.0e-84 315.8 228 72.8
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.0e-84 315.8 265 63.8
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 2.6e-83 312.8 236 69.9
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 7.5e-83 311.2 268 64.6
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.4e-81 307.0 266 63.5
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 9.1e-81 304.3 255 66.3
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 8.5e-79 297.7 264 62.1
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 1.1e-78 297.4 238 66.4
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.2e-77 293.9 212 73.6
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 2.1e-77 293.1 200 78.5
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 5.2e-76 288.5 273 61.9
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.4e-75 285.8 265 60.4
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 2.7e-72 276.2 214 69.6
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.5e-67 260.4 144 88.2
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.0e-64 250.0 194 68.6
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.9e-44 181.4 173 58.4
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 1.7e-39 167.2 215 45.1
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 2.3e-39 166.8 198 52.5
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 5.2e-36 155.6 205 45.9
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.5e-30 136.7 239 38.9
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.6e-29 134.0 93 72.0
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.4e-28 131.0 74 90.5
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 8.4e-26 121.7 78 78.2
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 6.0e-24 115.5 103 67.0
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 7.8e-24 115.2 226 37.6
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 9.9e-19 98.2 180 37.2
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 4.2e-17 92.8 106 54.7
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 7.9e-16 88.6 128 39.1
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 6.9e-12 75.5 50 70.0
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 9.0e-12 75.1 40 82.5
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 7.6e-11 72.0 40 80.0
BolC1t01166H Brassica oleracea HOM05D003984 ORTHO05D033849 3.2e-09 66.6 46 76.1
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.2e-09 66.2 40 72.5
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 4.2e-09 66.2 42 69.0
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 5.5e-09 65.9 138 34.1
BraA09t38747Z Brassica rapa HOM05D003984 ORTHO05D033849 7.9e-08 62.0 67 59.7
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 1.3e-07 61.2 86 34.9
BcaNung04651 Brassica carinata HOM05D034866 ORTHO05D039225 2.3e-07 60.5 115 46.1
A09p62400 Brassica napus HOM05D000348 ORTHO05D013806 8.7e-07 58.5 40 70.0
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 1.1e-06 58.2 35 74.3
BraA05t21530Z Brassica rapa HOM05D003984 ORTHO05D033849 1.1e-06 58.2 67 53.7
C06p30290 Brassica napus HOM05D021762 ORTHO05D013806 1.9e-06 57.4 34 76.5
BraA07t29158Z Brassica rapa HOM05D021762 ORTHO05D013806 5.6e-06 55.8 34 76.5


User provided reference genes

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