Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc296G30 Aethionema arabicum HOM05D006727 ORTHO05D008408 1.9e-127 459.1 229 100.0
CARHR161200 Cardamine hirsuta HOM05D006727 ORTHO05D008408 1.3e-107 393.3 231 85.3
AL5G32050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 4.2e-106 388.3 231 84.4
Thhalv10010694m.g Eutrema salsugineum HOM05D006727 ORTHO05D008408 1.6e-105 386.3 230 84.8
AT3G51610 Arabidopsis thaliana HOM05D006727 ORTHO05D008408 4.6e-105 384.8 228 84.6
Carub.0005s1797 Capsella rubella HOM05D006727 ORTHO05D008408 7.9e-105 384.0 231 84.4
BcaC09g50100 Brassica carinata HOM05D006727 ORTHO05D008408 1.3e-104 383.3 229 82.1
C01p28960 Brassica napus HOM05D006727 ORTHO05D008408 2.3e-104 382.5 229 81.7
BolC1t02827H Brassica oleracea HOM05D006727 ORTHO05D008408 3.0e-104 382.1 229 81.7
BcaNung00375 Brassica carinata HOM05D006727 ORTHO05D008408 1.5e-103 379.8 217 84.3
A01p23320 Brassica napus HOM05D006727 ORTHO05D008408 5.6e-103 377.9 232 81.0
BraA01t02241Z Brassica rapa HOM05D006727 ORTHO05D008408 5.6e-103 377.9 232 81.0
THA.LOC104823356 Tarenaya hassleriana HOM05D006727 ORTHO05D008408 1.6e-97 359.8 214 81.3
Thecc.04G153700 Theobroma cacao HOM05D006727 ORTHO05D008408 3.3e-95 352.1 214 79.4
Cfa017053 Carpinus fangiana HOM05D006727 ORTHO05D008408 1.3e-94 350.1 226 76.5
Dinv25328 Davidia involucrata HOM05D006727 ORTHO05D008408 1.3e-94 350.1 211 79.6
Manes.09G116800 Manihot esculenta HOM05D006727 ORTHO05D008408 2.2e-94 349.4 223 75.3
CiPaw.09G219900 Carya illinoinensis HOM05D006727 ORTHO05D008408 3.7e-94 348.6 215 77.2
Gorai.011G128700 Gossypium raimondii HOM05D006727 ORTHO05D008408 4.8e-94 348.2 214 79.0
QL07p032522 Quercus lobata HOM05D006727 ORTHO05D008408 8.2e-94 347.4 218 75.7
Gohir.A10G149900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 1.4e-93 346.7 214 78.5
COL.COLO4_16540 Corchorus olitorius HOM05D006727 ORTHO05D008408 1.8e-93 346.3 215 77.2
Gohir.D10G116900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 2.4e-93 345.9 214 78.5
GSVIVG01030200001 Vitis vinifera HOM05D006727 ORTHO05D008408 2.4e-93 345.9 217 77.0
CSS0002185 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 5.3e-93 344.7 219 75.3
Prupe.6G291700 Prunus persica HOM05D006727 ORTHO05D008408 5.3e-93 344.7 214 77.6
TWI53G1665 Tripterygium wilfordii HOM05D006727 ORTHO05D008408 9.0e-93 344.0 209 77.5
TAR220G0001 Trochodendron aralioides HOM05D006727 ORTHO05D008408 1.2e-92 343.6 214 77.6
CSS0012941 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 2.0e-92 342.8 219 74.9
MELO3C009112.2 Cucumis melo HOM05D006727 ORTHO05D008408 4.5e-92 341.7 218 75.2
Dinv11373 Davidia involucrata HOM05D006727 ORTHO05D008408 5.9e-92 341.3 211 77.3
Duzib212G0227 Durio zibethinus HOM05D006727 ORTHO05D008408 5.9e-92 341.3 211 77.7
Atru.chr8.2386 Acer truncatum HOM05D006727 ORTHO05D008408 7.7e-92 340.9 209 78.9
arahy.Tifrunner.gnm1.ann1.SP3HKJ Arachis hypogaea HOM05D006727 ORTHO05D008408 7.7e-92 340.9 214 76.2
arahy.Tifrunner.gnm1.ann1.U8U4T8 Arachis hypogaea HOM05D006727 ORTHO05D008408 1.0e-91 340.5 214 75.7
Glyma.18G215000 Glycine max HOM05D006727 ORTHO05D008408 1.3e-91 340.1 226 74.3
Lalb_Chr19g0124021 Lupinus albus HOM05D006727 ORTHO05D008408 1.3e-91 340.1 215 75.8
FAN14G1566 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.7e-91 339.7 219 74.4
MD12G1186200 Malus domestica HOM05D006727 ORTHO05D008408 1.7e-91 339.7 226 73.0
Potri.016G134700 Populus trichocarpa HOM05D006727 ORTHO05D008408 2.9e-91 339.0 211 76.3
Sed0012883 Sechium edule HOM05D006727 ORTHO05D008408 2.9e-91 339.0 214 74.8
Hund03725 Selenicereus undatus HOM05D006727 ORTHO05D008408 2.9e-91 339.0 208 77.4
CANSAT35G0523 Cannabis sativa HOM05D006727 ORTHO05D008408 3.8e-91 338.6 215 75.3
CsaV3_3G033190 Cucumis sativus L. HOM05D006727 ORTHO05D008408 3.8e-91 338.6 211 75.8
FAN02G0358 Fragaria x ananassa HOM05D006727 ORTHO05D008408 8.5e-91 337.4 219 74.0
RcHm_v2.0_Chr3g0460801 Rosa chinensis HOM05D006727 ORTHO05D008408 8.5e-91 337.4 211 76.3
Nitab4.5_0000950g0010 Nicotiana tabacum HOM05D006727 ORTHO05D008408 1.4e-90 336.7 211 74.9
FvH4_6g10100 Fragaria vesca HOM05D006727 ORTHO05D008408 1.9e-90 336.3 219 74.0
HanXRQChr01g0000191 Helianthus annuus HOM05D006727 ORTHO05D008408 2.5e-90 335.9 212 76.4
Sabra04G0152100 Salix brachista HOM05D006727 ORTHO05D008408 2.5e-90 335.9 232 70.7
TPR.G26930 Trifolium pratense HOM05D006727 ORTHO05D008408 4.2e-90 335.1 211 74.9
Medtr7g072680 Medicago truncatula HOM05D006727 ORTHO05D008408 7.2e-90 334.3 205 76.6
SGA_v2.0_scaffold373G50173 Striga asiatica HOM05D006727 ORTHO05D008408 7.2e-90 334.3 217 72.4
Phvul.008G083900 Phaseolus vulgaris HOM05D006727 ORTHO05D008408 9.4e-90 334.0 225 72.9
Lj1g0012647 Lotus japonicus HOM05D006727 ORTHO05D008408 1.2e-89 333.6 205 75.1
Peaxi162Scf00732g00434 Petunia axillaris HOM05D006727 ORTHO05D008408 1.2e-89 333.6 211 74.9
Rhsim05G0229700 Rhododendron simsii HOM05D006727 ORTHO05D008408 1.6e-89 333.2 216 74.1
Migut.J00054 Erythranthe guttata HOM05D006727 ORTHO05D008408 2.7e-89 332.4 211 74.4
Glyma.09G276200 Glycine max HOM05D006727 ORTHO05D008408 3.6e-89 332.0 226 73.0
Lsat_1_v5_gn_5_150061 Lactuca sativa HOM05D006727 ORTHO05D008408 3.6e-89 332.0 216 75.5
FAN05G1856 Fragaria x ananassa HOM05D006727 ORTHO05D008408 6.1e-89 331.3 219 73.5
Psat3g120440 Pisum sativum HOM05D006727 ORTHO05D008408 6.1e-89 331.3 211 73.9
ECA248G2137 Erigeron canadensis HOM05D006727 ORTHO05D008408 1.4e-88 330.1 212 74.5
Sp5g10660 Schrenkiella parvula HOM05D006727 ORTHO05D008408 1.8e-88 329.7 180 88.3
EL10Ac7g17073 Beta vulgaris HOM05D006727 ORTHO05D008408 3.0e-88 328.9 206 75.2
PGR004G2541 Punica granatum HOM05D006727 ORTHO05D008408 5.1e-88 328.2 211 75.4
PSO017G7044 Papaver somniferum HOM05D006727 ORTHO05D008408 6.7e-88 327.8 214 72.0
MD04G1172900 Malus domestica HOM05D006727 ORTHO05D008408 8.8e-88 327.4 210 73.8
FAN05G4632 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.1e-87 327.0 219 72.6
Aqoxy4G02378 Aquilegia oxysepala HOM05D006727 ORTHO05D008408 5.7e-87 324.7 223 70.9
MSTRG.18948 Avicennia marina HOM05D006727 ORTHO05D008408 5.7e-87 324.7 220 70.9
Ciclev10012697m.g Citrus clementina HOM05D006727 ORTHO05D008408 5.7e-87 324.7 219 70.8
Sc19g0002650 Simmondsia chinensis HOM05D006727 ORTHO05D008408 2.8e-86 322.4 211 71.6
Cc06_g00470 Coffea canephora HOM05D006727 ORTHO05D008408 6.3e-86 321.2 219 68.5
HPP92_001138 Vanilla planifolia HOM05D006727 ORTHO05D008408 5.0e-83 311.6 210 71.0
Eucgr.K01278 Eucalyptus grandis HOM05D006727 ORTHO05D008408 3.2e-82 308.9 211 70.6
Zm00001eb281990 Zea mays HOM05D006727 ORTHO05D008408 4.2e-82 308.5 211 68.7
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 2.1e-81 306.2 217 65.9
Os05g0168400 Oryza sativa ssp. japonica HOM05D006727 ORTHO05D008408 7.9e-81 304.3 209 68.9
Haze_21159 Corylus avellana HOM05D006727 ORTHO05D008408 3.3e-79 298.9 178 79.8
vmacro20362 Vaccinium macrocarpon HOM05D006727 ORTHO05D008408 1.5e-76 290.0 213 67.1
Nn2g10333 Nelumbo nucifera HOM05D006727 ORTHO05D008408 3.8e-75 285.4 175 74.9
PSO170G4157 Papaver somniferum HOM05D006727 ORTHO05D008408 1.1e-74 283.9 178 73.6
Oeu026955.4 Olea europaea HOM05D006727 ORTHO05D008408 1.4e-74 283.5 264 56.8
CDE04G1801 Ceratophyllum demersum HOM05D006727 ORTHO05D008408 1.4e-72 276.9 176 70.5
Ah.15g090120 Amaranthus hybridus HOM05D006727 ORTHO05D008408 8.2e-70 267.7 215 65.1
unitig_749.g14090 Utricularia gibba HOM05D006727 ORTHO05D008408 5.9e-68 261.5 186 64.0
CAN.G119.2 Capsicum annuum HOM05D006727 ORTHO05D008408 2.3e-64 249.6 155 73.5
TAR623G1271 Trochodendron aralioides HOM05D006727 ORTHO05D008408 1.2e-63 247.3 212 63.2
Mapoly0003s0079 Marchantia polymorpha HOM05D006727 ORTHO05D008408 9.7e-63 244.2 216 54.6
FAN09G3050 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.3e-62 243.8 165 70.9
AUR62006372 Chenopodium quinoa HOM05D006727 ORTHO05D008408 2.7e-60 236.1 209 56.9
SMO356G0277 Selaginella moellendorffii HOM05D006727 ORTHO05D008408 1.1e-58 230.7 192 54.7
ClCG10G022640 Citrullus lanatus HOM05D006727 ORTHO05D008408 2.7e-57 226.1 211 57.8
Pp3c2_32200 Physcomitrium patens HOM05D006727 ORTHO05D008408 4.4e-55 218.8 228 46.9
Nitab4.5_0000330g0040 Nicotiana tabacum HOM05D006727 ORTHO05D008408 4.8e-54 215.3 139 72.7
Actinidia20787 Actinidia chinensis HOM05D006727 ORTHO05D008408 4.1e-53 212.2 126 77.8
Ca_07756_v3 Cicer arietinum L. HOM05D006727 ORTHO05D008408 8.0e-49 198.0 137 67.2
BraA09t39934Z Brassica rapa HOM05D006727 ORTHO05D008408 8.6e-43 177.9 128 73.4
Sopen03g037430 Solanum pennellii HOM05D006727 ORTHO05D008408 1.1e-42 177.6 115 72.2
SHI12925 Sapria himalayana HOM05D006727 ORTHO05D008408 1.5e-42 177.2 120 70.8
AagrBONN_evm.TU.Sc2ySwM_344.2624 Anthoceros agrestis HOM05D006727 ORTHO05D008408 7.3e-42 174.9 148 50.7
A09p44730 Brassica napus HOM05D006727 ORTHO05D008408 7.3e-42 174.9 128 71.1
Cre01.g049450 Chlamydomonas reinhardtii HOM05D006727 ORTHO05D008408 1.1e-37 161.0 207 37.2
Oeu060435.2 Olea europaea HOM05D006727 ORTHO05D008408 7.0e-37 158.3 102 71.6
AL1G25050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 4.1e-29 132.5 83 80.7
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 1.2e-28 131.0 222 31.1
MCO09G625 Micromonas commoda HOM05D006727 ORTHO05D008408 7.3e-26 121.7 154 33.8
Solyc03g118520.4 Solanum lycopersicum HOM05D006727 ORTHO05D008408 1.6e-25 120.6 76 75.0
Sopen03g037400 Solanum pennellii HOM05D006727 ORTHO05D008408 3.6e-25 119.4 69 78.3
AagrBONN_evm.TU.Sc2ySwM_344.2622 Anthoceros agrestis HOM05D006727 ORTHO05D008408 4.7e-25 119.0 100 53.0
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 2.3e-24 116.7 74 70.3
AL8G15680 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 4.4e-23 112.5 52 96.2
SEGI_08771 Sequoiadendron giganteum HOM05D006727 ORTHO05D008408 5.4e-21 105.5 59 74.6
BolC8t50296H Brassica oleracea HOM05D006727 ORTHO05D008408 2.7e-20 103.2 71 73.2
Carub.0007s3202 Capsella rubella HOM05D006727 ORTHO05D008408 2.9e-14 83.2 58 82.8
MD12G1088300 Malus domestica HOM05D006727 ORTHO05D008408 1.4e-08 64.3 70 50.0
A03p48380 Brassica napus HOM05D023373 ORTHO05D024557 1.8e-08 63.9 92 45.7
BcaB01g00436 Brassica carinata HOM05D006727 ORTHO05D008408 6.9e-08 62.0 73 54.8


User provided reference genes

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