Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 0.0e+00 1431.0 1013 100.0
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 0.0e+00 1103.2 1014 83.5
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 0.0e+00 1098.6 1019 83.0
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 0.0e+00 1094.7 1015 84.2
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 0.0e+00 1082.4 1015 81.2
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 0.0e+00 1077.8 1015 83.6
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 6.0e-306 1054.3 1016 82.1
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 4.8e-295 1018.1 1016 80.1
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 2.9e-292 1008.8 1016 78.3
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 7.1e-291 1004.2 1009 80.0
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 6.7e-289 997.7 1034 78.2
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 1.3e-284 983.4 1019 78.8
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 2.2e-284 982.6 1024 78.3
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 3.8e-284 981.9 1019 78.5
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 6.5e-284 981.1 1017 78.7
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 2.2e-276 956.1 1020 73.3
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.5e-232 810.4 895 72.8
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 8.3e-231 804.7 926 70.8
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 1.3e-228 797.3 926 70.8
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 2.1e-226 790.0 933 70.8
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.3e-223 780.8 896 70.1
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.3e-223 780.8 896 70.1
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 3.7e-223 779.2 933 69.0
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 3.7e-223 779.2 861 72.6
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 6.4e-223 778.5 896 69.6
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 2.3e-212 743.4 1034 63.3
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 5.6e-211 738.8 1042 58.5
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 4.7e-210 735.7 1036 62.5
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 9.8e-208 728.0 896 68.8
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 4.9e-207 725.7 1027 58.8
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 3.9e-204 716.1 1033 61.5
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 2.5e-203 713.4 1025 63.0
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 9.5e-203 711.4 1020 57.3
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.0e-201 706.1 1027 63.2
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.9e-199 699.9 1027 60.8
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 6.4e-199 698.7 1044 62.1
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.4e-198 697.6 1027 59.3
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 1.2e-197 694.5 1037 59.8
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 2.7e-197 693.3 1035 62.0
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.6e-197 692.6 1032 61.6
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.0e-196 691.4 1027 62.4
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 4.7e-194 682.6 1013 62.0
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.4e-193 680.2 1026 61.6
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 4.0e-193 679.5 1043 60.5
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 5.8e-192 675.6 1027 59.8
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 8.4e-191 671.8 1097 55.9
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 1.4e-190 671.0 1019 60.6
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 5.4e-190 669.1 1019 60.5
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.2e-189 667.9 1016 60.3
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 2.7e-189 666.8 1034 51.8
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 6.0e-189 665.6 1025 61.1
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 8.7e-188 661.8 949 58.0
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.1e-187 661.4 1023 60.0
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.3e-186 657.9 1022 55.1
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.8e-186 656.8 1024 58.9
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 4.8e-186 656.0 1023 55.9
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 1.4e-185 654.4 1013 60.3
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 6.9e-185 652.1 1027 60.6
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.5e-184 651.0 1022 61.1
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 2.6e-184 650.2 894 67.4
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 7.6e-184 648.7 901 60.8
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 9.9e-184 648.3 958 62.6
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 2.2e-183 647.1 1033 59.3
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 2.2e-183 647.1 886 68.6
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 2.9e-183 646.7 920 67.0
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 4.9e-183 646.0 894 66.4
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 2.4e-182 643.7 881 66.6
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 2.4e-182 643.7 1019 61.8
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 3.2e-182 643.3 824 70.3
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 7.1e-182 642.1 914 65.0
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 7.1e-182 642.1 902 64.2
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 7.1e-182 642.1 892 58.6
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 6.0e-181 639.0 894 63.8
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 3.9e-180 636.3 1015 55.5
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 1.5e-179 634.4 910 65.7
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 2.5e-179 633.6 914 65.3
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.6e-178 630.9 819 71.1
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 2.8e-178 630.2 822 66.2
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 1.4e-177 627.9 1032 58.9
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 1.8e-177 627.5 1020 56.1
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 5.3e-177 625.9 909 62.9
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 6.9e-177 625.5 909 66.9
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 9.0e-177 625.2 893 63.0
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.2e-176 624.8 851 68.4
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 4.5e-176 622.9 890 64.9
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.8e-176 622.5 892 65.6
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 9.9e-176 621.7 892 65.6
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 1.3e-175 621.3 912 63.0
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 8.4e-175 618.6 882 63.6
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 4.2e-174 616.3 1026 53.8
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 5.5e-174 615.9 889 63.2
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 1.2e-173 614.8 1011 50.4
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 3.5e-173 613.2 934 60.9
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 6.0e-173 612.5 906 64.0
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 1.8e-172 610.9 804 69.5
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 2.3e-172 610.5 816 68.3
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 6.7e-172 609.0 1027 56.0
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 2.5e-171 607.1 1027 54.7
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 4.3e-171 606.3 1023 55.9
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 5.6e-171 605.9 896 65.8
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 1.6e-170 604.4 1031 54.3
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 8.1e-170 602.1 880 64.4
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 6.9e-169 599.0 969 60.7
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.5e-168 597.8 814 66.8
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 1.5e-168 597.8 913 58.1
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 2.0e-168 597.4 938 58.6
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 2.6e-168 597.0 832 64.5
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 4.5e-168 596.3 965 58.1
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.9e-167 593.6 1017 57.0
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.9e-167 593.6 843 62.6
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 2.5e-166 590.5 1018 57.9
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 2.5e-166 590.5 806 69.7
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 7.1e-166 589.0 938 61.1
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 4.6e-165 586.3 821 66.5
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 4.6e-165 586.3 810 66.3
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 4.6e-165 586.3 911 63.1
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 4.6e-165 586.3 1020 53.7
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 1.5e-163 581.3 863 64.0
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 4.3e-163 579.7 1032 54.8
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 7.4e-163 578.9 911 59.4
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 2.8e-162 577.0 903 53.8
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 4.8e-162 576.2 800 67.9
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 1.4e-161 574.7 885 59.3
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 1.9e-158 564.3 810 64.8
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 1.2e-157 561.6 810 67.0
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 3.6e-157 560.1 921 53.3
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 2.5e-155 553.9 1010 49.5
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 7.4e-155 552.4 885 61.0
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 1.3e-151 541.6 817 63.3
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 5.0e-151 539.7 909 54.6
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 2.8e-146 523.9 854 61.7
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 3.8e-143 513.5 898 57.1
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.1e-142 511.9 1013 50.3
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 2.0e-139 501.1 934 55.9
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.1e-137 495.4 740 59.6
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 9.1e-137 492.3 791 60.2
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 1.1e-134 485.3 1025 46.8
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.5e-131 474.9 876 57.8
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 9.7e-131 472.2 802 62.6
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.4e-129 468.4 784 48.1
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 7.0e-129 466.1 685 71.4
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.7e-125 454.1 684 63.0
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.8e-114 417.5 909 49.2
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.1e-113 414.1 923 45.4
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 2.3e-111 407.9 726 57.6
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.8e-108 398.3 908 46.8
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 8.3e-106 389.4 801 50.8
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 7.0e-105 386.3 919 52.6
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.0e-103 380.9 649 70.7
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.7e-96 357.8 677 55.1
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 4.3e-94 350.5 649 72.3
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.6e-91 341.3 921 44.3
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 3.3e-86 324.3 897 32.1
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 5.2e-84 317.0 952 45.2
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 6.8e-84 316.6 397 55.4
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 2.4e-81 308.1 530 55.8
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 4.6e-80 303.9 759 47.3
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 6.0e-80 303.5 450 48.0
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 5.2e-76 290.4 422 49.5
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 3.2e-73 281.2 651 54.1
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 2.9e-66 258.1 596 57.9
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 8.4e-66 256.5 415 46.0
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 3.0e-63 248.1 263 61.6
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 4.8e-53 214.2 226 52.2
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.2e-49 201.4 329 38.3
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 1.1e-46 193.0 311 69.1
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 3.4e-43 181.4 135 67.4
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.2e-37 162.2 198 49.5
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 1.3e-29 136.3 88 77.3
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 1.4e-28 132.9 122 58.2
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 6.9e-28 130.6 71 84.5
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.6e-24 119.4 119 52.9
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 3.7e-21 108.2 239 85.4
BcaC01g01003 Brassica carinata HOM05D003722 ORTHO05D004589 2.2e-13 82.4 139 48.2
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 6.3e-13 80.9 194 33.0
C01p05870 Brassica napus HOM05D000903 ORTHO05D000731 1.0e-10 73.6 215 32.1
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.7e-10 72.8 64 51.6
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 2.0e-06 59.3 66 50.0
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 9.8e-06 57.0 206 25.7


User provided reference genes

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