Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc279G10 Aethionema arabicum HOM05D005371 ORTHO05D006863 5.2e-34 147.1 74 100.0
Aa31LG11G10740 Aethionema arabicum HOM05D005371 ORTHO05D006863 3.0e-13 78.2 47 87.2
Thhalv10016095m.g Eutrema salsugineum HOM05D005371 ORTHO05D006863 6.7e-13 77.0 47 85.1
Sp6g25400 Schrenkiella parvula HOM05D005371 ORTHO05D006863 1.9e-12 75.5 47 78.7
CARHR194010 Cardamine hirsuta HOM05D005371 ORTHO05D006863 4.3e-12 74.3 47 78.7
Cpa.g.sc16.46 Carica papaya HOM05D005371 ORTHO05D006863 1.3e-11 72.8 47 76.6
Manes.03G186400 Manihot esculenta HOM05D005371 ORTHO05D006863 1.3e-11 72.8 47 78.7
AL3G17060 Arabidopsis lyrata HOM05D005371 ORTHO05D006863 1.6e-11 72.4 47 80.9
AT3G06200 Arabidopsis thaliana HOM05D005371 ORTHO05D006863 1.6e-11 72.4 47 80.9
Carub.0003s0564 Capsella rubella HOM05D005371 ORTHO05D006863 1.6e-11 72.4 47 80.9
Sp3g05120 Schrenkiella parvula HOM05D005371 ORTHO05D006863 1.6e-11 72.4 47 80.9
Ca_00612_v3 Cicer arietinum L. HOM05D005371 ORTHO05D006863 2.1e-11 72.0 47 72.3
TWI53G1142 Tripterygium wilfordii HOM05D005371 ORTHO05D006863 2.1e-11 72.0 47 74.5
Aa31LG5G16730 Aethionema arabicum HOM05D005371 ORTHO05D006863 2.8e-11 71.6 47 76.6
Sed0017990 Sechium edule HOM05D005371 ORTHO05D006863 2.8e-11 71.6 47 74.5
Sed0019484 Sechium edule HOM05D005371 ORTHO05D006863 2.8e-11 71.6 47 74.5
CARHR080720 Cardamine hirsuta HOM05D005371 ORTHO05D006863 3.7e-11 71.2 47 78.7
CiPaw.01G158300 Carya illinoinensis HOM05D005371 ORTHO05D006863 3.7e-11 71.2 47 72.3
Potri.010G029400 Populus trichocarpa HOM05D005371 ORTHO05D006863 4.8e-11 70.9 47 74.5
Thecc.04G219500 Theobroma cacao HOM05D005371 ORTHO05D006863 6.2e-11 70.5 47 76.6
TPR.G28919 Trifolium pratense HOM05D005371 ORTHO05D006863 6.2e-11 70.5 47 70.2
Carub.0006s1730 Capsella rubella HOM05D005371 ORTHO05D006863 1.1e-10 69.7 47 72.3
MD16G1181600 Malus domestica HOM05D005371 ORTHO05D006863 1.1e-10 69.7 47 74.5
Prupe.1G149000 Prunus persica HOM05D005371 ORTHO05D006863 1.1e-10 69.7 47 74.5
ClCG05G005500 Citrullus lanatus HOM05D005371 ORTHO05D006863 1.4e-10 69.3 47 72.3
CsaV3_3G013820 Cucumis sativus L. HOM05D005371 ORTHO05D006863 1.4e-10 69.3 47 70.2
Thhalv10021285m.g Eutrema salsugineum HOM05D005371 ORTHO05D006863 1.4e-10 69.3 47 74.5
Gohir.A09G200400 Gossypium hirsutum HOM05D005371 ORTHO05D006863 1.4e-10 69.3 47 74.5
Sabra08G0160600 Salix brachista HOM05D005371 ORTHO05D006863 1.4e-10 69.3 47 72.3
Ciclev10005567m.g Citrus clementina HOM05D005371 ORTHO05D006863 1.8e-10 68.9 47 68.1
Ciclev10026219m.g Citrus clementina HOM05D005371 ORTHO05D006863 1.8e-10 68.9 47 66.0
Atru.chr4.2593 Acer truncatum HOM05D005371 ORTHO05D006863 2.4e-10 68.6 47 70.2
A05p41790 Brassica napus HOM05D005371 ORTHO05D006863 2.4e-10 68.6 47 72.3
BraA05t22898Z Brassica rapa HOM05D005371 ORTHO05D006863 2.4e-10 68.6 47 72.3
COL.COLO4_21626 Corchorus olitorius HOM05D005371 ORTHO05D006863 2.4e-10 68.6 47 74.5
Eucgr.B01158 Eucalyptus grandis HOM05D005371 ORTHO05D006863 2.4e-10 68.6 47 70.2
Gohir.A10G115500 Gossypium hirsutum HOM05D005371 ORTHO05D006863 2.4e-10 68.6 47 74.5
Gorai.011G168200 Gossypium raimondii HOM05D005371 ORTHO05D006863 2.4e-10 68.6 47 74.5
MELO3C006575.2 Cucumis melo HOM05D005371 ORTHO05D006863 3.1e-10 68.2 47 70.2
Dinv38368 Davidia involucrata HOM05D002181 ORTHO05D003287 3.1e-10 68.2 47 74.5
Gohir.D10G151100 Gossypium hirsutum HOM05D005371 ORTHO05D006863 3.1e-10 68.2 47 72.3
Aa31sc1413G10 Aethionema arabicum HOM05D005371 ORTHO05D006863 4.0e-10 67.8 55 61.8
Gohir.D09G194600 Gossypium hirsutum HOM05D005371 ORTHO05D006863 4.0e-10 67.8 47 74.5
Gorai.006G218000 Gossypium raimondii HOM05D005371 ORTHO05D006863 4.0e-10 67.8 47 74.5
Hma1.2p1_3925F.1_g337960 Hydrangea macrophylla HOM05D005371 ORTHO05D006863 4.0e-10 67.8 47 74.5
Lj6g0013027 Lotus japonicus HOM05D005371 ORTHO05D006863 4.0e-10 67.8 47 68.1
MD13G1180900 Malus domestica HOM05D005371 ORTHO05D006863 4.0e-10 67.8 47 72.3
BcaC05g29797 Brassica carinata HOM05D005371 ORTHO05D006863 5.3e-10 67.4 47 70.2
C05p61030 Brassica napus HOM05D005371 ORTHO05D006863 5.3e-10 67.4 47 70.2
BolC5t34759H Brassica oleracea HOM05D005371 ORTHO05D006863 5.3e-10 67.4 47 70.2
Duzib151G0238 Durio zibethinus HOM05D005371 ORTHO05D006863 5.3e-10 67.4 47 72.3
Potri.008G200600 Populus trichocarpa HOM05D005371 ORTHO05D006863 5.3e-10 67.4 47 70.2
PGR031G1359 Punica granatum HOM05D005371 ORTHO05D006863 5.3e-10 67.4 47 72.3
TAR633G1547 Trochodendron aralioides HOM05D005371 ORTHO05D006863 5.3e-10 67.4 47 70.2
FvH4_4g14220 Fragaria vesca HOM05D005371 ORTHO05D006863 9.0e-10 66.6 47 70.2
FAN07G1015 Fragaria x ananassa HOM05D005371 ORTHO05D006863 9.0e-10 66.6 47 70.2
FAN12G2714 Fragaria x ananassa HOM05D005371 ORTHO05D006863 9.0e-10 66.6 47 70.2
Lalb_Chr20g0118351 Lupinus albus HOM05D005371 ORTHO05D006863 9.0e-10 66.6 47 68.1
Medtr2g021320 Medicago truncatula HOM05D005371 ORTHO05D006863 9.0e-10 66.6 47 66.0
BcaC05g30047 Brassica carinata HOM05D005371 ORTHO05D006863 1.2e-09 66.2 47 68.1
CSS0011749 Camellia sinensis var. sinensis HOM05D005371 ORTHO05D006863 1.2e-09 66.2 45 75.6
CSS0026299 Camellia sinensis var. sinensis HOM05D005371 ORTHO05D006863 1.2e-09 66.2 45 75.6
HanXRQChr08g0218651 Helianthus annuus HOM05D005371 ORTHO05D006863 1.2e-09 66.2 47 72.3
MD12G1097700 Malus domestica HOM05D005371 ORTHO05D006863 1.2e-09 66.2 47 70.2
Ah.13g074330 Amaranthus hybridus HOM05D005371 ORTHO05D006863 1.5e-09 65.9 45 77.8
Aqoxy7G00162 Aquilegia oxysepala HOM05D005371 ORTHO05D006863 1.5e-09 65.9 47 68.1
ECA232G2257 Erigeron canadensis HOM05D005371 ORTHO05D006863 1.5e-09 65.9 47 72.3
Rhsim02G0018900 Rhododendron simsii HOM05D005371 ORTHO05D006863 1.5e-09 65.9 47 70.2
HPP92_012442 Vanilla planifolia HOM05D005371 ORTHO05D006863 1.5e-09 65.9 47 68.1
RcHm_v2.0_Chr4g0418951 Rosa chinensis HOM05D005371 ORTHO05D006863 2.0e-09 65.5 47 68.1
Cfa015560 Carpinus fangiana HOM05D005371 ORTHO05D006863 2.6e-09 65.1 47 63.8
Haze_00980 Corylus avellana HOM05D005371 ORTHO05D006863 2.6e-09 65.1 47 63.8
Haze_00986 Corylus avellana HOM05D005371 ORTHO05D006863 2.6e-09 65.1 47 63.8
Haze_00989 Corylus avellana HOM05D005371 ORTHO05D006863 2.6e-09 65.1 47 63.8
Migut.G00256 Erythranthe guttata HOM05D005371 ORTHO05D006863 2.6e-09 65.1 45 71.1
Os03g0320900 Oryza sativa ssp. japonica HOM05D005371 ORTHO05D006863 2.6e-09 65.1 47 70.2
AUR62002624 Chenopodium quinoa HOM05D005371 ORTHO05D006863 3.4e-09 64.7 45 73.3
AUR62030040 Chenopodium quinoa HOM05D005371 ORTHO05D006863 3.4e-09 64.7 45 73.3
CsaV3_3G013810 Cucumis sativus L. HOM05D005371 ORTHO05D006863 3.4e-09 64.7 47 68.1
FAN17G2777 Fragaria x ananassa HOM05D005371 ORTHO05D006863 3.4e-09 64.7 47 68.1
Sc19g0004630 Simmondsia chinensis HOM05D005371 ORTHO05D006863 3.4e-09 64.7 45 71.1
TAR362G1168 Trochodendron aralioides HOM05D005371 ORTHO05D006863 3.4e-09 64.7 47 66.0
Atru.chr4.2595 Acer truncatum HOM05D005371 ORTHO05D006863 4.5e-09 64.3 43 74.4
DCAR_021293 Daucus carota HOM05D005371 ORTHO05D006863 4.5e-09 64.3 45 71.1
Hund12213 Selenicereus undatus HOM05D005371 ORTHO05D006863 4.5e-09 64.3 56 60.7
MSTRG.24760 Avicennia marina HOM05D005371 ORTHO05D006863 5.8e-09 63.9 47 70.2
CAN.G652.5 Capsicum annuum HOM05D005371 ORTHO05D006863 5.8e-09 63.9 47 70.2
CDE02G4078 Ceratophyllum demersum HOM05D005371 ORTHO05D006863 5.8e-09 63.9 47 68.1
Lj6P663T68 Lonicera japonica HOM05D005371 ORTHO05D006863 5.8e-09 63.9 45 71.1
MBI13_g15010_MAGBIO Magnolia biondii HOM05D005371 ORTHO05D006863 5.8e-09 63.9 47 63.8
Psat1g184760 Pisum sativum HOM05D005371 ORTHO05D006863 5.8e-09 63.9 47 63.8
Solyc11g005900.2 Solanum lycopersicum HOM05D005371 ORTHO05D006863 5.8e-09 63.9 47 70.2
Sopen11g001840 Solanum pennellii HOM05D005371 ORTHO05D006863 5.8e-09 63.9 47 70.2
PGSC0003DMG400035738 Solanum tuberosum HOM05D005371 ORTHO05D006863 5.8e-09 63.9 47 70.2
vmacro15298 Vaccinium macrocarpon HOM05D005371 ORTHO05D006863 5.8e-09 63.9 47 72.3
CANSAT78G0247 Cannabis sativa HOM05D005371 ORTHO05D006863 7.6e-09 63.5 45 68.9
EL10Ac6g13948 Beta vulgaris HOM05D005371 ORTHO05D006863 1.0e-08 63.2 45 73.3
MELO3C006574.2 Cucumis melo HOM05D005371 ORTHO05D006863 1.0e-08 63.2 47 66.0
HanXRQChr10g0304241 Helianthus annuus HOM05D005371 ORTHO05D006863 1.0e-08 63.2 64 56.2
Lsat_1_v5_gn_8_20540 Lactuca sativa HOM05D005371 ORTHO05D006863 1.0e-08 63.2 47 68.1
QL06p005861 Quercus lobata HOM05D005371 ORTHO05D006863 1.0e-08 63.2 47 61.7
ATR0307G094 Amborella trichopoda HOM05D005371 ORTHO05D006863 1.7e-08 62.4 56 55.4
MSTRG.3982 Avicennia marina HOM05D005371 ORTHO05D006863 1.7e-08 62.4 45 71.1
CDE06G0660 Ceratophyllum demersum HOM05D005371 ORTHO05D006863 1.7e-08 62.4 47 66.0
Zm00001eb015260 Zea mays HOM05D005371 ORTHO05D006863 2.2e-08 62.0 47 70.2
CBR_g4816 Chara braunii HOM05D005371 ORTHO05D006863 2.9e-08 61.6 56 51.8
Cc03_g02980 Coffea canephora HOM05D005371 ORTHO05D006863 2.9e-08 61.6 47 70.2
Oeu037674.1 Olea europaea HOM05D005371 ORTHO05D006863 2.9e-08 61.6 47 66.0
Actinidia00081 Actinidia chinensis HOM05D005371 ORTHO05D006863 3.8e-08 61.2 47 66.0
SEGI_38554 Sequoiadendron giganteum HOM05D005371 ORTHO05D006863 3.8e-08 61.2 47 63.8
unitig_8.g3082 Utricularia gibba HOM05D001103 ORTHO05D000954 3.8e-08 61.2 47 66.0
Nitab4.5_0007396g0010 Nicotiana tabacum HOM05D005371 ORTHO05D006863 4.9e-08 60.8 47 66.0
Nitab4.5_0012725g0010 Nicotiana tabacum HOM05D005371 ORTHO05D006863 4.9e-08 60.8 47 66.0
Glyma.13G210400 Glycine max HOM05D005371 ORTHO05D006863 6.5e-08 60.5 47 57.4
PSO135G0635 Papaver somniferum HOM05D005371 ORTHO05D006863 6.5e-08 60.5 47 61.7
Nn2g14732 Nelumbo nucifera HOM05D005371 ORTHO05D006863 8.4e-08 60.1 47 61.7
VMungo0540G1614 Vigna mungo HOM05D000137 ORTHO05D000503 8.4e-08 60.1 47 59.6
Peaxi162Scf00589g00036 Petunia axillaris HOM05D005371 ORTHO05D006863 1.1e-07 59.7 47 63.8
Phvul.006G155400 Phaseolus vulgaris HOM05D005371 ORTHO05D006863 1.1e-07 59.7 47 59.6
SalBow2G1082 Salvia bowleyana HOM05D000137 ORTHO05D000503 1.9e-07 58.9 45 64.4
SGA_v2.0_scaffold107G30774 Striga asiatica HOM05D005371 ORTHO05D006863 2.5e-07 58.5 45 62.2
AagrBONN_evm.TU.Sc2ySwM_117.1044 Anthoceros agrestis HOM05D005371 ORTHO05D006863 4.2e-07 57.8 47 57.4
Migut.N00142 Erythranthe guttata HOM05D005371 ORTHO05D006863 4.2e-07 57.8 45 60.0
Glyma.15G102400 Glycine max HOM05D005371 ORTHO05D006863 5.5e-07 57.4 47 55.3
Oeu023656.1 Olea europaea HOM05D005371 ORTHO05D006863 7.1e-07 57.0 45 64.4
Pp3c7_19190 Physcomitrium patens HOM05D005371 ORTHO05D006863 7.1e-07 57.0 56 46.4
SMO347G0347 Selaginella moellendorffii HOM05D005371 ORTHO05D006863 1.2e-06 56.2 47 53.2
Mapoly0103s0074 Marchantia polymorpha HOM05D005371 ORTHO05D006863 1.6e-06 55.8 47 57.4
CsaV3_7G008570 Cucumis sativus L. HOM05D005371 ORTHO05D006863 4.6e-06 54.3 47 59.6
CBR_g11013 Chara braunii HOM05D005371 ORTHO05D006863 6.0e-06 53.9 45 55.6


User provided reference genes

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