Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc277G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 5.4e-173 610.9 310 100.0
Aa31LG3G1920 Aethionema arabicum HOM05D006626 ORTHO05D007352 3.3e-146 521.9 310 86.1
Sp3g07800 Schrenkiella parvula HOM05D006626 ORTHO05D007352 9.0e-128 460.7 310 77.4
Carub.0003s0853 Capsella rubella HOM05D006626 ORTHO05D007352 2.7e-124 449.1 310 75.8
Thhalv10021243m.g Eutrema salsugineum HOM05D006626 ORTHO05D007352 6.7e-123 444.5 308 76.9
AL3G20610 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 2.5e-122 442.6 303 76.9
AT3G09430 Arabidopsis thaliana HOM05D006626 ORTHO05D007352 2.5e-122 442.6 311 74.9
CARHR083840 Cardamine hirsuta HOM05D006626 ORTHO05D007352 5.3e-120 434.9 302 74.5
BraA05t22736Z Brassica rapa HOM05D006626 ORTHO05D007352 1.1e-114 417.2 299 73.9
A05p39550 Brassica napus HOM05D006626 ORTHO05D007352 6.2e-113 411.4 352 65.6
THA.LOC104816277 Tarenaya hassleriana HOM05D006626 ORTHO05D007352 1.1e-112 410.6 315 68.3
BolC5t34508H Brassica oleracea HOM05D006626 ORTHO05D007352 1.0e-107 394.0 354 63.6
BcaC05g29673 Brassica carinata HOM05D006626 ORTHO05D007352 1.8e-107 393.3 364 61.0
C05p58580 Brassica napus HOM05D006626 ORTHO05D007352 1.1e-104 384.0 396 57.1
Aa31sc161G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 2.0e-95 353.2 207 89.4
Atru.chr8.1962 Acer truncatum HOM05D006626 ORTHO05D007352 1.1e-88 330.9 302 60.6
COL.COLO4_14816 Corchorus olitorius HOM05D006626 ORTHO05D007352 9.1e-88 327.8 308 59.4
Duzib093G0902 Durio zibethinus HOM05D006626 ORTHO05D007352 2.0e-87 326.6 308 58.4
TWI74G0730 Tripterygium wilfordii HOM05D006626 ORTHO05D007352 8.5e-86 321.2 305 61.0
Thecc.05G040800 Theobroma cacao HOM05D006626 ORTHO05D007352 4.2e-85 318.9 303 58.7
Gohir.D09G152000 Gossypium hirsutum HOM05D006626 ORTHO05D007352 1.2e-84 317.4 310 60.0
Gohir.A09G156700 Gossypium hirsutum HOM05D006626 ORTHO05D007352 8.0e-84 314.7 310 60.0
Gorai.006G173400 Gossypium raimondii HOM05D006626 ORTHO05D007352 1.8e-83 313.5 310 59.7
Ciclev10012389m.g Citrus clementina HOM05D006626 ORTHO05D007352 1.1e-82 310.8 307 57.7
QL07p048128 Quercus lobata HOM05D006626 ORTHO05D007352 1.1e-80 304.3 314 55.4
CANSAT35G0626 Cannabis sativa HOM05D006626 ORTHO05D007352 1.8e-80 303.5 308 57.8
Manes.09G089800 Manihot esculenta HOM05D006626 ORTHO05D007352 2.4e-80 303.1 299 56.2
TAR623G1666 Trochodendron aralioides HOM05D006626 ORTHO05D007352 4.2e-77 292.4 312 55.1
CiPaw.09G191700 Carya illinoinensis HOM05D006626 ORTHO05D007352 6.1e-76 288.5 310 54.8
CSS0017232 Camellia sinensis var. sinensis HOM05D006626 ORTHO05D007352 4.0e-75 285.8 311 55.3
Lj2A96T66 Lonicera japonica HOM05D006626 ORTHO05D007352 6.7e-75 285.0 304 55.3
Lalb_Chr19g0125411 Lupinus albus HOM05D006626 ORTHO05D007352 2.0e-74 283.5 307 56.7
Nn2g10382 Nelumbo nucifera HOM05D006626 ORTHO05D007352 2.0e-74 283.5 308 54.5
Actinidia26461 Actinidia chinensis HOM05D006626 ORTHO05D007352 3.3e-74 282.7 308 54.5
PGR004G1893 Punica granatum HOM05D006626 ORTHO05D007352 3.3e-74 282.7 311 51.8
PGSC0003DMG400008843 Solanum tuberosum HOM05D006626 ORTHO05D007352 3.3e-74 282.7 304 56.2
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 9.7e-74 281.2 294 55.8
Sc20g0004680 Simmondsia chinensis HOM05D006626 ORTHO05D007352 1.7e-73 280.4 300 52.3
MD12G1140400 Malus domestica HOM05D006626 ORTHO05D007352 6.3e-73 278.5 303 53.8
arahy.Tifrunner.gnm1.ann1.BMK4YH Arachis hypogaea HOM05D006626 ORTHO05D007352 2.4e-72 276.6 312 54.2
MD04G1127200 Malus domestica HOM05D006626 ORTHO05D007352 3.1e-72 276.2 303 53.5
Sopen09g005420 Solanum pennellii HOM05D006626 ORTHO05D007352 4.1e-72 275.8 306 54.2
arahy.Tifrunner.gnm1.ann1.DD5A1S Arachis hypogaea HOM05D006626 ORTHO05D007352 5.3e-72 275.4 312 54.2
Sed0005156 Sechium edule HOM05D006626 ORTHO05D007352 5.3e-72 275.4 303 53.1
Solyc09g010710.4 Solanum lycopersicum HOM05D006626 ORTHO05D007352 1.6e-71 273.9 305 53.4
Phvul.008G100000 Phaseolus vulgaris HOM05D006626 ORTHO05D007352 1.0e-70 271.2 309 52.1
FAN14G0594 Fragaria x ananassa HOM05D006626 ORTHO05D007352 2.9e-70 269.6 301 52.5
Aqoxy4G02911 Aquilegia oxysepala HOM05D006626 ORTHO05D007352 3.8e-70 269.2 323 52.0
FvH4_6g13970 Fragaria vesca HOM05D006626 ORTHO05D007352 5.0e-70 268.9 301 52.5
GSVIVG01034185001 Vitis vinifera HOM05D006626 ORTHO05D007352 6.5e-70 268.5 302 53.3
FAN02G1739 Fragaria x ananassa HOM05D006626 ORTHO05D007352 8.5e-70 268.1 301 52.2
RcHm_v2.0_Chr3g0466791 Rosa chinensis HOM05D006626 ORTHO05D007352 8.5e-70 268.1 301 52.8
Ah.08g212230 Amaranthus hybridus HOM05D006626 ORTHO05D007352 1.9e-69 266.9 304 51.3
Migut.J00335 Erythranthe guttata HOM05D006626 ORTHO05D007352 1.9e-69 266.9 298 53.4
MSTRG.19088 Avicennia marina HOM05D006626 ORTHO05D007352 4.2e-69 265.8 301 52.8
Glyma.08G358600 Glycine max HOM05D006626 ORTHO05D007352 4.2e-69 265.8 310 51.0
Ca_11335_v3 Cicer arietinum L. HOM05D006626 ORTHO05D007352 7.2e-69 265.0 300 52.7
vmacro20144 Vaccinium macrocarpon HOM05D006626 ORTHO05D007352 7.2e-69 265.0 311 53.1
Medtr7g060340 Medicago truncatula HOM05D006626 ORTHO05D007352 8.0e-68 261.5 310 51.6
AL614U10010 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 1.4e-67 260.8 214 69.2
FAN05G2294 Fragaria x ananassa HOM05D006626 ORTHO05D007352 3.0e-67 259.6 301 51.2
FAN09G4835 Fragaria x ananassa HOM05D006626 ORTHO05D007352 3.0e-67 259.6 301 51.2
Potri.006G084500 Populus trichocarpa HOM05D006626 ORTHO05D007352 3.0e-67 259.6 295 54.2
CsaV3_3G034930 Cucumis sativus L. HOM05D006626 ORTHO05D007352 4.0e-67 259.2 301 53.8
Lj1g0010963 Lotus japonicus HOM05D006626 ORTHO05D007352 1.5e-66 257.3 330 48.8
Cc06_g02710 Coffea canephora HOM05D006626 ORTHO05D007352 2.0e-66 256.9 301 52.5
SGA_v2.0_scaffold126G33791 Striga asiatica HOM05D006626 ORTHO05D007352 4.4e-66 255.8 296 51.7
ECA236G0397 Erigeron canadensis HOM05D006626 ORTHO05D007352 5.7e-66 255.4 291 53.3
MELO3C009261.2 Cucumis melo HOM05D006626 ORTHO05D007352 9.8e-66 254.6 294 53.1
HanXRQChr04g0124851 Helianthus annuus HOM05D006626 ORTHO05D007352 9.8e-66 254.6 301 52.2
SHI12668 Sapria himalayana HOM05D006626 ORTHO05D007352 1.7e-65 253.8 284 52.8
Rhsim05G0191600 Rhododendron simsii HOM05D006626 ORTHO05D007352 6.3e-65 251.9 300 51.3
PSO339G0986 Papaver somniferum HOM05D006626 ORTHO05D007352 2.4e-64 250.0 344 48.3
Nitab4.5_0003552g0020 Nicotiana tabacum HOM05D006626 ORTHO05D007352 3.1e-64 249.6 296 51.0
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.4e-64 248.8 285 52.3
PSO384G0023 Papaver somniferum HOM05D006626 ORTHO05D007352 9.1e-64 248.1 326 48.8
CAN.G326.19 Capsicum annuum HOM05D006626 ORTHO05D007352 4.5e-63 245.7 267 55.1
Nitab4.5_0005449g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 4.5e-63 245.7 296 50.0
VMungo1383G0921 Vigna mungo HOM05D006626 ORTHO05D007352 7.7e-63 245.0 292 50.3
ATR0559G191 Amborella trichopoda HOM05D006626 ORTHO05D007352 5.0e-62 242.3 291 48.5
Oeu049236.1 Olea europaea HOM05D006626 ORTHO05D007352 8.6e-62 241.5 297 52.2
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 8.0e-60 235.0 310 49.4
Peaxi162Scf00710g00212 Petunia axillaris HOM05D006626 ORTHO05D007352 1.8e-59 233.8 135 80.0
Peaxi162Scf00165g01519 Petunia axillaris HOM05D006626 ORTHO05D007352 3.0e-59 233.0 303 50.2
MBI14_g37824_MAGBIO Magnolia biondii HOM05D006626 ORTHO05D007352 8.9e-59 231.5 316 48.1
CDE09G1242 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 1.3e-57 227.6 297 47.8
Eucgr.K03142 Eucalyptus grandis HOM05D006626 ORTHO05D007352 4.3e-53 212.6 122 80.3
EL10Ac7g17297 Beta vulgaris HOM05D006626 ORTHO05D007352 5.6e-53 212.2 286 44.4
Lsat_1_v5_gn_8_82780 Lactuca sativa HOM05D006626 ORTHO05D007352 9.5e-53 211.5 325 44.6
Zm00001eb105220 Zea mays HOM05D006626 ORTHO05D007352 2.9e-49 199.9 282 44.0
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 1.1e-48 198.0 108 85.2
AUR62040984 Chenopodium quinoa HOM05D006626 ORTHO05D007352 3.2e-48 196.4 107 82.2
HPP92_012592 Vanilla planifolia HOM05D006626 ORTHO05D007352 7.0e-48 195.3 107 83.2
Os07g0695700 Oryza sativa ssp. japonica HOM05D006626 ORTHO05D007352 5.6e-45 185.7 112 75.0
ClCG10G021100 Citrullus lanatus HOM05D006626 ORTHO05D007352 9.5e-45 184.9 305 43.9
Mapoly0001s0170 Marchantia polymorpha HOM05D006626 ORTHO05D007352 1.2e-42 177.9 234 43.6
AUR62042106 Chenopodium quinoa HOM05D006626 ORTHO05D007352 4.4e-42 176.0 98 81.6
Prupe.6G253700 Prunus persica HOM05D006626 ORTHO05D007352 5.8e-42 175.6 248 46.0
AagrBONN_evm.TU.Sc2ySwM_362.1793 Anthoceros agrestis HOM05D006626 ORTHO05D007352 7.5e-42 175.3 143 58.7
QL01p055053 Quercus lobata HOM05D006626 ORTHO05D007352 1.9e-40 170.6 119 71.4
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 2.4e-40 170.2 98 82.7
Hund12078 Selenicereus undatus HOM05D006626 ORTHO05D007352 6.0e-39 165.6 92 80.4
CBR_g84850 Chara braunii HOM05D006626 ORTHO05D007352 7.3e-37 158.7 120 60.8
Atru.chr11.672 Acer truncatum HOM05D006626 ORTHO05D007352 4.4e-34 149.4 99 71.7
QL93p0107_0195 Quercus lobata HOM05D006626 ORTHO05D007352 7.5e-34 148.7 117 65.0
SEGI_14743 Sequoiadendron giganteum HOM05D006626 ORTHO05D007352 1.7e-33 147.5 98 69.4
Dinv35614 Davidia involucrata HOM05D006626 ORTHO05D007352 2.4e-32 143.7 213 46.5
Cpa.g.sc188.15 Carica papaya HOM05D006626 ORTHO05D007352 1.6e-31 141.0 226 44.2
Haze_20773 Corylus avellana HOM05D003752 ORTHO05D004537 7.1e-16 89.0 248 33.9
Psat3g141480 Pisum sativum HOM05D006626 ORTHO05D007352 9.3e-16 88.6 215 36.3
MD02G1131100 Malus domestica HOM05D006626 ORTHO05D007352 1.3e-14 84.7 105 45.7
MD05G1218700 Malus domestica HOM05D006626 ORTHO05D007352 1.3e-14 84.7 106 48.1
MD16G1182100 Malus domestica HOM05D006626 ORTHO05D007352 1.3e-14 84.7 106 48.1
MD15G1437500 Malus domestica HOM05D006626 ORTHO05D007352 1.7e-14 84.3 106 48.1
AUR62042107 Chenopodium quinoa HOM05D006626 ORTHO05D007352 3.3e-13 80.1 198 37.9
SGA_v2.0_scaffold18G08259 Striga asiatica HOM05D006626 ORTHO05D007352 2.1e-12 77.4 82 52.4
QL01p053860 Quercus lobata HOM05D006626 ORTHO05D007352 1.8e-11 74.3 40 82.5
Nitab4.5_0027058g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 5.3e-11 72.8 187 37.4
AUR62040983 Chenopodium quinoa HOM05D006626 ORTHO05D007352 2.2e-09 67.4 198 33.3
TAR633G2221 Trochodendron aralioides HOM05D006626 ORTHO05D007352 2.1e-07 60.8 41 63.4


User provided reference genes

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