Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc276G90 Aethionema arabicum HOM05D007344 ORTHO05D009010 8.8e-125 450.3 226 100.0
Aa31LG6G10960 Aethionema arabicum HOM05D007344 ORTHO05D009010 1.9e-74 283.1 217 71.4
Aa31LG6G10970 Aethionema arabicum HOM05D007344 ORTHO05D009010 1.6e-73 280.0 219 69.9
BcaC05g26866 Brassica carinata HOM05D007344 ORTHO05D009010 9.6e-55 217.6 217 56.2
A09p37590 Brassica napus HOM05D007344 ORTHO05D009010 1.6e-54 216.9 217 55.8
BolC5t31464H Brassica oleracea HOM05D007344 ORTHO05D009010 2.1e-54 216.5 217 56.2
BraA09t39269Z Brassica rapa HOM05D007344 ORTHO05D009010 1.1e-53 214.2 218 54.1
BcaB07g32467 Brassica carinata HOM05D007344 ORTHO05D009010 2.2e-51 206.5 218 53.7
C05p27460 Brassica napus HOM05D007344 ORTHO05D009010 5.0e-51 205.3 227 53.3
A07p11180 Brassica napus HOM05D007344 ORTHO05D009010 4.8e-46 188.7 219 50.2
BraA07t28908Z Brassica rapa HOM05D007344 ORTHO05D009010 4.8e-46 188.7 219 50.2
CARHR027960 Cardamine hirsuta HOM05D007344 ORTHO05D009010 2.4e-45 186.4 218 50.9
C07p16850 Brassica napus HOM05D007344 ORTHO05D009010 6.9e-45 184.9 219 49.8
BcaC06g35373 Brassica carinata HOM05D007344 ORTHO05D009010 2.6e-44 183.0 219 49.3
BolC7t42191H Brassica oleracea HOM05D007344 ORTHO05D009010 2.6e-44 183.0 209 51.7
Thhalv10009709m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 1.1e-34 151.0 172 52.3
THA.LOC104813298 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 1.5e-31 140.6 189 45.0
Sp1g24730 Schrenkiella parvula HOM05D007344 ORTHO05D009010 9.4e-26 121.3 215 40.0
THA.LOC104814041 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 3.3e-23 112.8 166 39.2
BolC6t39693H Brassica oleracea HOM05D007344 ORTHO05D009010 6.3e-22 108.6 208 39.9
C06p46460 Brassica napus HOM05D007344 ORTHO05D009010 1.1e-21 107.8 208 37.5
AT1G72290 Arabidopsis thaliana HOM05D007344 ORTHO05D009010 2.4e-21 106.7 213 34.7
BcaB03g14972 Brassica carinata HOM05D007344 ORTHO05D009010 3.1e-21 106.3 221 38.0
THA.LOC104812280 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 3.1e-21 106.3 117 48.7
Aa31LG4G3600 Aethionema arabicum HOM05D000535 ORTHO05D000427 4.1e-21 105.9 206 34.5
BcaC08g46676 Brassica carinata HOM05D007344 ORTHO05D009010 7.0e-21 105.1 204 39.2
A07p38410 Brassica napus HOM05D007344 ORTHO05D009010 7.0e-21 105.1 205 39.5
C06p46520 Brassica napus HOM05D007344 ORTHO05D009010 7.0e-21 105.1 204 39.2
BraA07t31402Z Brassica rapa HOM05D007344 ORTHO05D009010 7.0e-21 105.1 205 39.5
CARHR065170 Cardamine hirsuta HOM05D007344 ORTHO05D009010 7.0e-21 105.1 207 38.2
BolC2t09025H Brassica oleracea HOM05D007344 ORTHO05D009010 1.6e-20 104.0 195 41.5
BolC6t39697H Brassica oleracea HOM05D007344 ORTHO05D009010 1.6e-20 104.0 206 38.3
BcaB03g14974 Brassica carinata HOM05D007344 ORTHO05D009010 3.5e-20 102.8 209 38.3
C02p29770 Brassica napus HOM05D007344 ORTHO05D009010 3.5e-20 102.8 195 41.5
BcaB03g15050 Brassica carinata HOM05D000535 ORTHO05D000427 7.7e-20 101.7 196 34.7
CARHR066380 Cardamine hirsuta HOM05D000535 ORTHO05D000427 1.0e-19 101.3 209 34.9
BcaB03g14973 Brassica carinata HOM05D007344 ORTHO05D009010 1.3e-19 100.9 206 37.9
BolC6t39698H Brassica oleracea HOM05D007344 ORTHO05D009010 1.3e-19 100.9 207 35.7
THA.LOC104812190 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 2.9e-19 99.8 170 35.3
Thhalv10019129m.g Eutrema salsugineum HOM05D000535 ORTHO05D000427 6.5e-19 98.6 204 32.4
Sp5g27360 Schrenkiella parvula HOM05D007344 ORTHO05D009010 6.5e-19 98.6 217 37.8
AL2G33090 Arabidopsis lyrata HOM05D000535 ORTHO05D000427 8.5e-19 98.2 212 33.0
BcaB03g14970 Brassica carinata HOM05D007344 ORTHO05D009010 8.5e-19 98.2 185 37.8
BcaB05g24743 Brassica carinata HOM05D007344 ORTHO05D009010 8.5e-19 98.2 196 40.8
BcaB02g07012 Brassica carinata HOM05D007344 ORTHO05D009010 1.9e-18 97.1 206 36.4
BcaC08g46756 Brassica carinata HOM05D000535 ORTHO05D009010 1.9e-18 97.1 206 35.0
Carub.0002s1910 Capsella rubella HOM05D007344 ORTHO05D009010 3.2e-18 96.3 217 35.0
Aa31LG4G3590 Aethionema arabicum HOM05D000535 ORTHO05D009010 4.2e-18 95.9 197 35.0
A07p39300 Brassica napus HOM05D000535 ORTHO05D009010 4.2e-18 95.9 206 34.0
BolC6t39791H Brassica oleracea HOM05D000535 ORTHO05D009010 4.2e-18 95.9 206 34.5
BraA07t31479Z Brassica rapa HOM05D000535 ORTHO05D009010 4.2e-18 95.9 206 34.0
BcaB05g24740 Brassica carinata HOM05D007344 ORTHO05D009010 5.5e-18 95.5 190 38.9
Thhalv10019095m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 5.5e-18 95.5 205 36.1
AL2G31960 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 7.2e-18 95.1 216 35.2
THA.LOC104814040 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 7.2e-18 95.1 201 32.3
AT1G73325 Arabidopsis thaliana HOM05D000535 ORTHO05D000427 9.4e-18 94.7 213 33.8
Carub.0002s1914 Capsella rubella HOM05D007344 ORTHO05D009010 9.4e-18 94.7 215 35.8
THA.LOC104813935 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 9.4e-18 94.7 200 32.5
C06p47530 Brassica napus HOM05D000535 ORTHO05D009010 4.7e-17 92.4 206 34.5
BolC6t39696H Brassica oleracea HOM05D007344 ORTHO05D009010 6.1e-17 92.0 188 38.3
Carub.0002s1912 Capsella rubella HOM05D007344 ORTHO05D009010 6.1e-17 92.0 220 32.7
Sp5g28260 Schrenkiella parvula HOM05D000535 ORTHO05D009010 2.3e-16 90.1 198 32.8
BcaB03g14976 Brassica carinata HOM05D007344 ORTHO05D009010 3.4e-15 86.3 156 35.3
AL2G31970 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 7.5e-15 85.1 170 35.9
THA.LOC104812189 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 7.5e-15 85.1 222 32.4
BcaB05g24739 Brassica carinata HOM05D007344 ORTHO05D009010 8.3e-14 81.6 208 34.1
BcaC08g46677 Brassica carinata HOM05D007344 ORTHO05D009010 1.1e-13 81.3 183 33.9
BcaB05g24737 Brassica carinata HOM05D007344 ORTHO05D009010 1.4e-13 80.9 218 33.0
BraA07t31400Z Brassica rapa HOM05D007344 ORTHO05D009010 5.4e-13 79.0 166 35.5
Oeu032705.1 Olea europaea HOM05D000535 ORTHO05D000427 7.0e-13 78.6 156 34.0
CARHR065180 Cardamine hirsuta HOM05D007344 ORTHO05D009010 9.1e-13 78.2 195 33.8
BcaC08g46673 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-12 77.8 166 34.9
C06p46430 Brassica napus HOM05D007344 ORTHO05D009010 1.2e-12 77.8 166 34.9
GSVIVG01012922001 Vitis vinifera HOM05D000535 ORTHO05D000427 1.2e-12 77.8 168 34.5
BcaB05g24736 Brassica carinata HOM05D007344 ORTHO05D009010 2.0e-12 77.0 218 33.0
Carub.0002s1909 Capsella rubella HOM05D007344 ORTHO05D009010 3.5e-12 76.3 165 36.4
BcaC03g15361 Brassica carinata HOM05D007344 ORTHO05D009010 4.5e-12 75.9 220 30.9
GSVIVG01012936001 Vitis vinifera HOM05D000535 ORTHO05D000427 4.5e-12 75.9 165 34.5
Oeu018758.1 Olea europaea HOM05D000535 ORTHO05D000427 5.9e-12 75.5 165 33.9
A02p17860 Brassica napus HOM05D007344 ORTHO05D009010 7.7e-12 75.1 175 35.4
BraA02t06836Z Brassica rapa HOM05D007344 ORTHO05D009010 7.7e-12 75.1 175 35.4
CSS0003160 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 2.9e-11 73.2 167 34.7
C06p46530 Brassica napus HOM05D007344 ORTHO05D009010 3.8e-11 72.8 101 42.6
BcaC08g46682 Brassica carinata HOM05D007344 ORTHO05D009010 5.0e-11 72.4 163 31.9
BcaC08g46679 Brassica carinata HOM05D007344 ORTHO05D009010 8.5e-11 71.6 220 31.8
C06p46550 Brassica napus HOM05D007344 ORTHO05D009010 8.5e-11 71.6 220 31.8
BolC6t39700H Brassica oleracea HOM05D007344 ORTHO05D009010 8.5e-11 71.6 220 31.8
AT1G73330 Arabidopsis thaliana HOM05D000535 ORTHO05D000427 1.5e-10 70.9 211 33.6
Thecc.05G198000 Theobroma cacao HOM05D000535 ORTHO05D000427 1.5e-10 70.9 142 35.2
A02p17890 Brassica napus HOM05D007344 ORTHO05D009010 1.9e-10 70.5 142 38.0
BraA02t06838Z Brassica rapa HOM05D007344 ORTHO05D009010 1.9e-10 70.5 142 38.0
BcaC03g15366 Brassica carinata HOM05D007344 ORTHO05D009010 4.2e-10 69.3 175 33.7
C02p29750 Brassica napus HOM05D007344 ORTHO05D009010 4.2e-10 69.3 175 33.7
BraA07t31405Z Brassica rapa HOM05D007344 ORTHO05D009010 4.2e-10 69.3 195 33.8
CARHR065160 Cardamine hirsuta HOM05D007344 ORTHO05D009010 4.2e-10 69.3 194 35.1
Lj2g0010766 Lotus japonicus HOM05D000535 ORTHO05D000427 5.5e-10 68.9 192 33.9
BcaC08g46552 Brassica carinata HOM05D008834 ORTHO05D011314 7.2e-10 68.6 194 29.4
Duzib128G0529 Durio zibethinus HOM05D000535 ORTHO05D000427 1.2e-09 67.8 170 33.5
Solyc06g072220.1 Solanum lycopersicum HOM05D000535 ORTHO05D000427 1.2e-09 67.8 148 31.1
CAN.G765.29 Capsicum annuum HOM05D000535 ORTHO05D011982 1.6e-09 67.4 142 35.2
Migut.O00272 Erythranthe guttata HOM05D000535 ORTHO05D000427 1.6e-09 67.4 173 31.2
Carub.0004s1488 Capsella rubella HOM05D000535 ORTHO05D000427 2.1e-09 67.0 210 31.0
AL2G33100 Arabidopsis lyrata HOM05D000535 ORTHO05D000427 2.7e-09 66.6 194 31.4
BolC2t09022H Brassica oleracea HOM05D007344 ORTHO05D009010 2.7e-09 66.6 144 36.8
A07p38440 Brassica napus HOM05D007344 ORTHO05D009010 3.6e-09 66.2 202 32.2
CSS0016167 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 6.1e-09 65.5 167 29.9
Cc00_g30520 Coffea canephora HOM05D000535 ORTHO05D000427 6.1e-09 65.5 159 32.1
Cc00_g34040 Coffea canephora HOM05D000535 ORTHO05D000427 6.1e-09 65.5 166 33.1
BcaC08g46678 Brassica carinata HOM05D007344 ORTHO05D009010 8.0e-09 65.1 219 27.9
C06p46540 Brassica napus HOM05D007344 ORTHO05D009010 8.0e-09 65.1 219 27.9
BolC2t09020H Brassica oleracea HOM05D007344 ORTHO05D009010 8.0e-09 65.1 133 40.6
BolC6t39699H Brassica oleracea HOM05D007344 ORTHO05D009010 8.0e-09 65.1 219 27.9
Cc00_g23760 Coffea canephora HOM05D000535 ORTHO05D000427 8.0e-09 65.1 163 31.3
Haze_08460 Corylus avellana HOM05D000535 ORTHO05D000427 8.0e-09 65.1 169 30.8
Dinv04608 Davidia involucrata HOM05D000535 ORTHO05D000427 8.0e-09 65.1 159 32.7
Sopen06g028540 Solanum pennellii HOM05D000535 ORTHO05D000427 8.0e-09 65.1 148 30.4
Manes.01G126100 Manihot esculenta HOM05D000535 ORTHO05D000427 1.0e-08 64.7 218 29.4
CSS0030185 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 1.4e-08 64.3 168 32.7
Ca_15754_v3 Cicer arietinum L. HOM05D000535 ORTHO05D013302 1.8e-08 63.9 154 31.8
Cc00_g28690 Coffea canephora HOM05D000535 ORTHO05D000427 1.8e-08 63.9 166 32.5
arahy.Tifrunner.gnm1.ann1.71B2RZ Arachis hypogaea HOM05D000535 ORTHO05D000427 3.0e-08 63.2 202 29.2
arahy.Tifrunner.gnm1.ann1.ARQH3Y Arachis hypogaea HOM05D000535 ORTHO05D000427 3.0e-08 63.2 202 29.2
BcaB07g32466 Brassica carinata HOM05D007344 ORTHO05D009010 3.0e-08 63.2 70 44.3
Medtr6g066210 Medicago truncatula HOM05D000535 ORTHO05D000427 3.0e-08 63.2 203 29.6
Medtr6g009563 Medicago truncatula HOM05D000535 ORTHO05D000427 4.0e-08 62.8 141 34.0
Manes.01G126000 Manihot esculenta HOM05D000535 ORTHO05D000427 5.2e-08 62.4 201 30.3
EL10Ac6g13199 Beta vulgaris HOM05D000535 ORTHO05D000427 8.8e-08 61.6 175 29.7
BcaC03g15365 Brassica carinata HOM05D007344 ORTHO05D009010 8.8e-08 61.6 131 38.2
C02p29730 Brassica napus HOM05D007344 ORTHO05D009010 8.8e-08 61.6 131 38.2
CAN.G765.33 Capsicum annuum HOM05D000535 ORTHO05D011982 8.8e-08 61.6 170 30.0
C06p46590 Brassica napus HOM05D007344 ORTHO05D009010 1.2e-07 61.2 208 30.8
BolC6t39705H Brassica oleracea HOM05D007344 ORTHO05D009010 1.2e-07 61.2 208 30.8
VMungo0464G1147 Vigna mungo HOM05D000535 ORTHO05D000427 1.2e-07 61.2 156 30.1
BolC6t39707H Brassica oleracea HOM05D007344 ORTHO05D009010 1.5e-07 60.8 205 26.8
SalBow5G3406 Salvia bowleyana HOM05D000535 ORTHO05D000427 1.5e-07 60.8 177 28.2
CSS0021540 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 2.0e-07 60.5 168 32.1
Sabra19G0098500 Salix brachista HOM05D000535 ORTHO05D050455 2.0e-07 60.5 160 30.0
MSTRG.11561 Avicennia marina HOM05D000535 ORTHO05D000427 2.6e-07 60.1 159 29.6
A07p38420 Brassica napus HOM05D007344 ORTHO05D009010 2.6e-07 60.1 219 27.4
BraA07t31403Z Brassica rapa HOM05D007344 ORTHO05D009010 2.6e-07 60.1 219 27.4
Sabra19G0101900 Salix brachista HOM05D003420 ORTHO05D003970 2.6e-07 60.1 160 30.0
DCAR_011686 Daucus carota HOM05D000535 ORTHO05D000427 3.4e-07 59.7 160 28.1
Glyma.09G163900 Glycine max HOM05D000535 ORTHO05D000427 3.4e-07 59.7 193 30.1
Glyma.16G212500 Glycine max HOM05D000535 ORTHO05D000427 3.4e-07 59.7 187 29.9
Medtr6g066190 Medicago truncatula HOM05D000535 ORTHO05D000427 3.4e-07 59.7 107 38.3
CAN.G765.30 Capsicum annuum HOM05D000535 ORTHO05D011982 4.4e-07 59.3 142 32.4
Potri.019G124500 Populus trichocarpa HOM05D010192 ORTHO05D012386 5.7e-07 58.9 164 29.9
Potri.019G088200 Populus trichocarpa HOM05D000535 ORTHO05D050455 9.8e-07 58.2 180 31.7
TPR.G8847 Trifolium pratense HOM05D000535 ORTHO05D000427 9.8e-07 58.2 172 31.4
MD03G1251400 Malus domestica HOM05D000535 ORTHO05D000427 1.3e-06 57.8 173 28.9
Nn3g18573 Nelumbo nucifera HOM05D000535 ORTHO05D000427 1.3e-06 57.8 159 33.3
Glyma.16G211800 Glycine max HOM05D000535 ORTHO05D013302 2.8e-06 56.6 158 29.7
BolC6t39691H Brassica oleracea HOM05D007344 ORTHO05D009010 3.7e-06 56.2 108 36.1
Medtr6g009650 Medicago truncatula HOM05D000535 ORTHO05D000427 3.7e-06 56.2 141 32.6
Phvul.004G138500 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 3.7e-06 56.2 169 30.8
BcaB03g14975 Brassica carinata HOM05D007344 ORTHO05D009010 4.9e-06 55.8 219 28.3
CsaV3_2G005020 Cucumis sativus L. HOM05D000535 ORTHO05D000427 4.9e-06 55.8 203 30.0
Lalb_Chr22g0354021 Lupinus albus HOM05D000535 ORTHO05D013302 4.9e-06 55.8 151 27.8
Thhalv10010972m.g Eutrema salsugineum HOM05D020464 ORTHO05D023357 6.3e-06 55.5 168 32.7
Manes.01G126300 Manihot esculenta HOM05D000535 ORTHO05D000427 6.3e-06 55.5 143 30.1
Glyma.12G234800 Glycine max HOM05D000535 ORTHO05D000427 8.3e-06 55.1 149 29.5
Glyma.16G211700 Glycine max HOM05D000535 ORTHO05D013302 8.3e-06 55.1 157 28.0
Psat0s2953g0120 Pisum sativum HOM05D000535 ORTHO05D000427 8.3e-06 55.1 166 32.5


User provided reference genes

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